Email l.a.kelley@imperial.ac.uk Description P76537 Date Thu Jan 5 12:24:07 GMT 2012 Unique Job ID 21d09c1a0d95da49

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qzbB_ 100.0 99 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yfey; PDBTitle: crystal structure of the uncharacterized protein yfey from escherichia2 coli 2 d1jnya1 60.4 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 3 c3cihA_ 46.5 12 PDB header:hydrolase Chain: A: PDB Molecule:putative alpha-rhamnosidase; PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron 4 c2jnvA_ 40.0 26 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 5 c3ib5A_ 34.6 16 PDB header:hormone Chain: A: PDB Molecule:sex pheromone precursor; PDBTitle: crystal structure of sex pheromone precursor (yp_536235.1)2 from lactobacillus salivarius subsp. salivarius ucc118 at3 1.35 a resolution 6 c2ejgD_ 29.7 28 PDB header:ligase Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3 7 c3e1yG_ 26.8 15 PDB header:translation Chain: G: PDB Molecule:eukaryotic peptide chain release factor gtp-binding subunit PDBTitle: crystal structure of human erf1/erf3 complex 8 d2i5nh1 25.4 13 Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain 9 c2ejmA_ 24.6 16 PDB header:ligase Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha; PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase 10 c2qx2A_ 16.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sex pheromone staph-cam373; PDBTitle: structure of the c-terminal domain of sex pheromone staph-cam3732 precursor from staphylococcus aureus 11 c1javA_ 16.1 63 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: average nmr solution structure of the trp-rich peptide of2 hiv gp41 bound to dpc micelles 12 d1dcza_ 15.9 21 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 13 c2pv6A_ 15.6 56 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: hiv-1 gp41 membrane proximal ectodomain region peptide in2 dpc micelle 14 c3cxmA_ 15.5 16 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil 15 c2wcyA_ 15.0 27 PDB header:immune system Chain: A: PDB Molecule:complement component c7; PDBTitle: nmr solution structure of factor i-like modules of2 complement c7. 16 c1jauA_ 14.7 56 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: nmr solution structure of the trp-rich peptide of hiv gp412 bound to dpc micelles 17 d1o78a_ 14.5 21 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 18 c2b8gA_ 13.9 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:biotin/lipoyl attachment protein; PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure) 19 d1f60a1 13.6 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 20 c3rleA_ 13.3 10 PDB header:membrane protein Chain: A: PDB Molecule:golgi reassembly-stacking protein 2; PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208) 21 c1s1hI_ not modelled 12.9 33 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 22 c3h00A_ not modelled 12.9 56 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein gp160; PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp412 fusion intermediate 23 d1nsja_ not modelled 12.7 24 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 24 d1laue_ not modelled 11.9 23 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 25 c2z51A_ not modelled 11.0 32 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis 26 c2dn8A_ not modelled 10.7 20 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase 27 d1kzyc2 not modelled 10.5 26 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 28 c2v1xB_ not modelled 9.5 27 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase 29 c3efyB_ not modelled 8.9 24 PDB header:cell cycle Chain: B: PDB Molecule:cif (cell cycle inhibiting factor); PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli 30 c2q8iB_ not modelled 8.9 16 PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol 31 c2booA_ not modelled 8.8 14 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung)2 from deinococcus radiodurans. 32 d1bdoa_ not modelled 8.1 23 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 33 d1tt2a_ not modelled 8.0 16 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 34 c3dzmB_ not modelled 7.7 26 PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 35 d1xhja_ not modelled 7.7 20 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 36 c3g9rF_ not modelled 7.5 56 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 37 c3nahC_ not modelled 7.3 8 PDB header:transferase Chain: C: PDB Molecule:rna dependent rna polymerase; PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase 38 d2vv5a1 not modelled 7.0 15 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 39 d1kjqa1 not modelled 7.0 22 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 40 c1y8oA_ not modelled 6.8 23 PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex 41 d1zunb1 not modelled 6.7 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 42 d1oywa2 not modelled 6.7 30 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 43 c3cxjB_ not modelled 6.7 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 44 d1m0sa2 not modelled 6.7 48 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 45 d1hv8a1 not modelled 6.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 46 c2c2aA_ not modelled 6.5 23 PDB header:transferase Chain: A: PDB Molecule:sensor histidine kinase; PDBTitle: structure of the entire cytoplasmic portion of a sensor2 histidine kinase protein 47 c2zhxG_ not modelled 6.4 13 PDB header:hydrolase/hydrolase inhibitor Chain: G: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor 48 d2zgwa1 not modelled 6.4 27 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 49 c3i5yA_ not modelled 6.3 32 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp 50 c1hv8B_ not modelled 6.3 21 PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii 51 d1czda2 not modelled 6.2 21 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 52 c3owvA_ not modelled 6.0 19 PDB header:hydrolase Chain: A: PDB Molecule:dna-entry nuclease; PDBTitle: structural insights into catalytic and substrate binding mechanisms of2 the strategic enda nuclease from streptococcus pneumoniae 53 c2k8fB_ not modelled 6.0 33 PDB header:transferase/transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: structural basis for the regulation of p53 function by p300 54 d2igsa1 not modelled 5.7 25 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PA2222-like 55 c3eqnB_ not modelled 5.7 21 PDB header:hydrolase Chain: B: PDB Molecule:glucan 1,3-beta-glucosidase; PDBTitle: crystal structure of beta-1,3-glucanase from phanerochaete2 chrysosporium (lam55a) 56 d2a9da2 not modelled 5.5 27 Fold:Oxidoreductase molybdopterin-binding domain Superfamily:Oxidoreductase molybdopterin-binding domain Family:Oxidoreductase molybdopterin-binding domain 57 c3k9aA_ not modelled 5.4 56 PDB header:viral protein Chain: A: PDB Molecule:hiv glycoprotein gp41; PDBTitle: crystal structure of hiv gp41 with mper 58 d1sr9a3 not modelled 5.4 24 Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 59 c2vsxA_ not modelled 5.4 20 PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex 60 d1ogpa2 not modelled 5.3 19 Fold:Oxidoreductase molybdopterin-binding domain Superfamily:Oxidoreductase molybdopterin-binding domain Family:Oxidoreductase molybdopterin-binding domain 61 d1okba_ not modelled 5.3 13 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase 62 d1y8ob1 not modelled 5.3 16 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 63 c2l5tA_ not modelled 5.3 11 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase; PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum 64 c1oywA_ not modelled 5.3 30 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase; PDBTitle: structure of the recq catalytic core 65 d2j8xa1 not modelled 5.1 9 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase