PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1y8oA_

Fold library id	PDB Header	Molecule	Title
c1y8oA_	PDB header: transferase	Chain: A: PDB Molecule: [pyruvate dehydrogenase [lipoamide]] kinase	PDBTitle: crystal structure of the pdk3-l2 complex

Links to external resources
Added to library: Tue Mar 16 13:27:56 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P K Q I E R Y S R F S P S P L S I K Q F L D F G R D N A C E K T S Y M F L R K E L P V R L A N T M R E V N L L P D N L L N R P S V G L V Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T
T T S
T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W Y M Q S F L E L L E Y E N K S P E D P Q V L D N F L Q V L I K V R N R H N D V V P T M A Q G V I E Y K E K F G F D P F I S T N I Q Y F L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R F Y T N R I S F R M L I N Q H T L L F G G D T N P V H P K H I G S I D P T C N V A D V V K D A Y E T A K M L C E Q Y Y L V A P E L E V E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S S T T S B T T B S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F N A K A P D K P I Q V V Y V P S H L F H M L F E L F K N S M R A T V E L Y E D R K E G Y P A V K T L V T L G K E D L S I K I S D L G G G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T S
T T
S S
S S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence P L R K I D R L F N Y M Y S P L F G Y G L P I S R L Y A R Y F Q G D L K L Y S M E G V G T D A V I Y L K A L S S E S F E R L P V F N K S A W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T T T
T T T T
T T T S
G G G
B
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . .

Sequence R H Y K T T P E A D D W S N P S S E P R D A S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	K	Q	I	E	R	Y	S	R	F	S	P	S	P	L	S	I	K	Q	F	L	D	F	G	R	D	N	A	C	E	K	T	S	Y	M	F	L	R	K	E	L	P	V	R	L	A	N	T	M	R	E	V	N	L	L	P	D	N	L	L	N	R	P	S	V	G	L	V	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S						B											T																										T	T	S						T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	Y	M	Q	S	F	L	E	L	L	E	Y	E	N	K	S	P	E	D	P	Q	V	L	D	N	F	L	Q	V	L	I	K	V	R	N	R	H	N	D	V	V	P	T	M	A	Q	G	V	I	E	Y	K	E	K	F	G	F	D	P	F	I	S	T	N	I	Q	Y	F	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											G	G	G	G			T	T																			G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	F	Y	T	N	R	I	S	F	R	M	L	I	N	Q	H	T	L	L	F	G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K	M	L	C	E	Q	Y	Y	L	V	A	P	E	L	E	V	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S			S	S		S	S	T	T	S	B	T	T	B																										S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	N	A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L	F	H	M	L	F	E	L	F	K	N	S	M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	K	E	D	L	S	I	K	I	S	D	L	G	G	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S	T	T	S																															T	T		S	S													S	S										S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	P	L	F	G	Y	G	L	P	I	S	R	L	Y	A	R	Y	F	Q	G	D	L	K	L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A	L	S	S	E	S	F	E	R	L	P	V	F	N	K	S	A	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	G		T	T	T					T	T												T	T									T	T	T										S		G	G	G		B							S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence	R	H	Y	K	T	T	P	E	A	D	D	W	S	N	P	S	S	E	P	R	D	A	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S							S	S					S	S				T	T