Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AB77
DateThu Jan 5 11:14:48 GMT 2012
Unique Job ID1fa42faf661bdfa8

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1fc4a_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
Confidence and coverage
Confidence:100.0% Coverage:100%
397 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPD
Secondary structure 
SS confidence 
Disorder  ???
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIAT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  DGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  RLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390........
Sequence  PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVIA
Secondary structure 
SS confidence 
Disorder 
?
?
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1fc4 chain A

3D model

Region: 2 - 398
Aligned: 397
Modelled: 397
Confidence: 100.0%
Identity: 97%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3tqx chain A

3D model

Region: 2 - 397
Aligned: 395
Modelled: 395
Confidence: 100.0%
Identity: 65%
PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii

Phyre2

PDB 2w8w chain A

3D model

Region: 3 - 397
Aligned: 392
Modelled: 395
Confidence: 100.0%
Identity: 34%
PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser

Phyre2

PDB 3a2b chain A

3D model

Region: 2 - 394
Aligned: 389
Modelled: 393
Confidence: 100.0%
Identity: 37%
PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine

Phyre2

PDB 1bs0 chain A

3D model

Region: 5 - 390
Aligned: 381
Modelled: 383
Confidence: 100.0%
Identity: 30%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2bwn chain A domain 1

3D model

Region: 4 - 390
Aligned: 385
Modelled: 387
Confidence: 100.0%
Identity: 29%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3hqt chain B

3D model

Region: 4 - 393
Aligned: 377
Modelled: 385
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa

Phyre2

PDB 1ohw chain A

3D model

Region: 6 - 394
Aligned: 371
Modelled: 389
Confidence: 100.0%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2eo5 chain A

3D model

Region: 5 - 394
Aligned: 361
Modelled: 377
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:419aa long hypothetical aminotransferase;
PDBTitle: crystal structure of 4-aminobutyrate aminotransferase from sulfolobus2 tokodaii strain7

Phyre2

PDB 1s0a chain A

3D model

Region: 10 - 393
Aligned: 365
Modelled: 376
Confidence: 100.0%
Identity: 19%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2byl chain A domain 1

3D model

Region: 7 - 394
Aligned: 367
Modelled: 388
Confidence: 100.0%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3dxv chain A

3D model

Region: 21 - 394
Aligned: 357
Modelled: 374
Confidence: 100.0%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae

Phyre2

PDB 1oat chain B

3D model

Region: 7 - 394
Aligned: 366
Modelled: 383
Confidence: 100.0%
Identity: 13%
PDB header:aminotransferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase

Phyre2

PDB 1zod chain A domain 1

3D model

Region: 4 - 394
Aligned: 375
Modelled: 391
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 2e7u chain A

3D model

Region: 1 - 391
Aligned: 368
Modelled: 384
Confidence: 100.0%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8

Phyre2

PDB 3a8u chain X

3D model

Region: 22 - 394
Aligned: 355
Modelled: 371
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase

Phyre2

PDB 3lv2 chain A

3D model

Region: 10 - 395
Aligned: 367
Modelled: 378
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin

Phyre2

PDB 3bv0 chain A

3D model

Region: 11 - 394
Aligned: 362
Modelled: 384
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 mycobacterium tuberculosis

Phyre2

PDB 2ord chain A

3D model

Region: 22 - 394
Aligned: 353
Modelled: 370
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution

Phyre2

PDB 3i5t chain B

3D model

Region: 23 - 394
Aligned: 355
Modelled: 372
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131

Phyre2
1
d1fc4a_
2
c3tqxA_
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c2w8wA_
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c3a2bA_
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d1bs0a_
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d2bwna1
7
c3hqtB_
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d1ohwa_
9
c2eo5A_
10
d1s0aa_
11
d2byla1
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c3dxvA_
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c1oatB_
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d1zoda1
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c2e7uA_
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c3a8uX_
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c3lv2A_
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c3bv0A_
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c2ordA_
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c3i5tB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1fc4a_
100.0 97 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
2c3tqxA_
100.0 65 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
3c2w8wA_
100.0 34 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
4c3a2bA_
100.0 37 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
5d1bs0a_
100.0 30 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
6d2bwna1
100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
7c3hqtB_
100.0 24 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
8d1ohwa_
100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
9c2eo5A_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:419aa long hypothetical aminotransferase;
PDBTitle: crystal structure of 4-aminobutyrate aminotransferase from sulfolobus2 tokodaii strain7
10d1s0aa_
100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
11d2byla1
100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
12c3dxvA_
100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae
13c1oatB_
100.0 13 PDB header:aminotransferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase
14d1zoda1
100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
15c2e7uA_
100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8
16c3a8uX_
100.0 15 PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase
17c3lv2A_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
18c3bv0A_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 mycobacterium tuberculosis
19c2ordA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
20c3i5tB_
100.0 16 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131
21c3fcrA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution
22c3nx3A_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
23c3ruyB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis
24c3oksB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
25d2gsaa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
26d1vefa1
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
27c2zsmA_
not modelled 100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form
28c3bs8A_
not modelled 100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis
29d1z7da1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30c2pb2B_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase;
PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding
31c1z7dE_
not modelled 100.0 16 PDB header:transferase
Chain: E: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii
32c3nuiA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:pyruvate transaminase;
PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17
33c3hmuA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi
34c3n5mD_
not modelled 100.0 15 PDB header:transferase
Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystals structure of a bacillus anthracis aminotransferase
35c2cjdA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase;
PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form
36c3l44A_
not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1;
PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase
37d1sffa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
38c2eh6A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
39c3dodA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis
40c3i4jC_
not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
41c2cy8A_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:d-phenylglycine aminotransferase;
PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201
42d2cfba1
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
43d1m6sa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
44c2ogeC_
not modelled 100.0 16 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
45d1x0ma1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
46d1wsta1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
47d1svva_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
48c3hdoB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
49c3bcxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
50c3ftbA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
51d1xi9a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52c3h14A_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
53c3ly1C_
not modelled 100.0 15 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
54c2x5dD_
not modelled 100.0 15 PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
55c2r0tA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
56d1vp4a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
57d1kl1a_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
58c3pj0D_
not modelled 100.0 13 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
59d1mdoa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
60d1jf9a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
61d1b9ha_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
62c2zc0C_
not modelled 100.0 16 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
63c3cq6E_
not modelled 100.0 13 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
64c3jtxB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
65c3qguB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
66c2hdyA_
not modelled 100.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
67c3eibB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
68c3caiA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
69c2po3B_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
70d1b5pa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
71c2douA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
72d1lc5a_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
73c3cbfA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
74c2dkjB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
75c2c7tA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
76c3dr4B_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
77c3f9tB_
not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
78d2r5ea1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
79c3getA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
80c3dzzB_
not modelled 100.0 11 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
81c3b46B_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
82d1o4sa_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
83d1c7na_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
84c3nysA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
85c3lwsF_
not modelled 100.0 14 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
86c3uwcA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
87d1qz9a_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
88c3frkB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
89d1j32a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
90c3fkdC_
not modelled 100.0 14 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
91c3l8aB_
not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
92d1v72a1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
93d1t3ia_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
94d1qgna_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
95c3kaxB_
not modelled 100.0 9 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
96d1w7la_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
97c3pdxA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
98c2o0rA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
99c3e9kA_
not modelled 100.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
100d1wyub1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
101c2o1bA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
102d1o69a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
103d1dfoa_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
104c3g0tA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
105d1u08a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
106d1tpla_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
107c3e2yB_
not modelled 100.0 15 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
108d1c4ka2
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
109c3fdbA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
110d1wyua1
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
111c3mafB_
not modelled 100.0 15 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
112c2hzpA_
not modelled 100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
113c3nraA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
114d2fnua1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
115d1js3a_
not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
116c3eleB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:amino transferase;
PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
117d1v2da_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
118c3eucB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
119d1gc0a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
120c3asaA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0