Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	Q	W	I	V	G	T	A	L	L	M	L	M	T	G	N	A	W	A	D	G	E	P	P	T	E	N	I	L	K	D	Q	F	K	K	Q	Y	H	G	I	L	K	L	D	A	I	T	L	K	N	L	D	A	K	G	N	Q	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																?																										?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	W	S	A	E	G	D	V	S	S	S	D	D	L	Y	T	W	V	G	Q	L	A	D	Y	E	L	L	E	Q	T	W	T	K	D	K	P	V	K	F	S	A	M	L	T	S	K	G	T	P	A	S	G	W	S	V	N	F	Y	S	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																					?	?	?	?	?	?	?		?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	A	A	A	S	D	R	G	R	V	V	D	D	I	K	T	N	N	K	Y	L	I	V	N	S	E	D	F	N	Y	R	F	S	Q	L	E	S	A	L	N	T	Q	K	N	S	I	P	A	L	E	K	E	V	K	A	L	D	K	Q	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	A	A	Q	K	A	A	D	A	Y	W	G	K	D	A	N	G	K	Q	M	T	R	E	D	A	F	K	K	I	H	Q	Q	R	D	E	F	N	K	Q	N	D	S	E	A	F	A	V	K	Y	D	K	E	V	Y	Q	P	A	I	A	A
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?																	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	H	K	Q	S	E	E	C	Y	E	V	P	I	Q	Q	K	R	D	F	D	I	N	E	Q	R	R	Q	T	F	L	Q	S	Q	K	L	S	R	K	L	Q	D	D	W	V	T	L	E	K	G	Q	Y	P	L	T	M	K	V	S	E	I
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?		?	?							?		?	?																			?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Sequence		N	S	K	K	V	A	I	L	M	K	I	D	D	I	N	Q	A	N	E	R	W	K	K	D	T	E	Q	L	R	R	N	G	V	I	K
Secondary structure
SS confidence
Disorder																								?	?						?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2uva chain I Region: 101 - 214 Aligned: 99 Modelled: 100 Confidence: 49.7% Identity: 17% PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 Phyre2 PDB 3t97 chain B Region: 271 - 312 Aligned: 42 Modelled: 42 Confidence: 46.2% Identity: 21% PDB header:protein transport Chain: B: PDB Molecule:nuclear pore complex protein nup54; PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54 Phyre2 PDB 2gl2 chain B Region: 146 - 189 Aligned: 44 Modelled: 44 Confidence: 40.5% Identity: 14% PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada Phyre2 PDB 1jcc chain C Region: 149 - 187 Aligned: 39 Modelled: 39 Confidence: 36.4% Identity: 23% PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations Phyre2 PDB 3pub chain A Region: 35 - 78 Aligned: 40 Modelled: 44 Confidence: 32.9% Identity: 33% PDB header:unknown function Chain: A: PDB Molecule:30kda protein; PDBTitle: crystal structure of the bombyx mori low molecular weight lipoprotein2 7 (bmlp7) Phyre2 PDB 1wu9 chain A domain 1 Region: 164 - 193 Aligned: 30 Modelled: 30 Confidence: 26.1% Identity: 27% Fold: EB1 dimerisation domain-like Superfamily: EB1 dimerisation domain-like Family: EB1 dimerisation domain-like Phyre2 PDB 2w0c chain R Region: 52 - 73 Aligned: 19 Modelled: 22 Confidence: 24.5% Identity: 37% PDB header:virus Chain: R: PDB Molecule:protein p3; PDBTitle: x-ray structure of the entire lipid-containing2 bacteriophage pm2 Phyre2 PDB 1ce0 chain B Region: 151 - 178 Aligned: 28 Modelled: 28 Confidence: 22.8% Identity: 32% PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model Phyre2 PDB 3oca chain B Region: 35 - 69 Aligned: 35 Modelled: 35 Confidence: 19.2% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis Phyre2 PDB 1g3w chain A domain 2 Region: 126 - 138 Aligned: 13 Modelled: 13 Confidence: 17.0% Identity: 8% Fold: Iron-dependent repressor protein, dimerization domain Superfamily: Iron-dependent repressor protein, dimerization domain Family: Iron-dependent repressor protein, dimerization domain Phyre2 PDB 2d0t chain A domain 1 Region: 9 - 27 Aligned: 19 Modelled: 19 Confidence: 16.0% Identity: 16% Fold: Indolic compounds 2,3-dioxygenase-like Superfamily: Indolic compounds 2,3-dioxygenase-like Family: Indoleamine 2,3-dioxygenase-like Phyre2 PDB 3qu1 chain B Region: 35 - 69 Aligned: 35 Modelled: 35 Confidence: 15.1% Identity: 11% PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:peptide deformylase 2; PDBTitle: peptide deformylase from vibrio cholerae Phyre2 PDB 1ei3 chain E Region: 146 - 258 Aligned: 113 Modelled: 113 Confidence: 14.0% Identity: 11% PDB header: PDB COMPND: Phyre2 PDB 1ws1 chain A Region: 35 - 69 Aligned: 35 Modelled: 35 Confidence: 13.4% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase 1; PDBTitle: structure analysis of peptide deformylase from bacillus2 cereus Phyre2 PDB 1gk6 chain B Region: 146 - 190 Aligned: 45 Modelled: 45 Confidence: 13.0% Identity: 20% PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) Phyre2 PDB 1u84 chain A Region: 207 - 242 Aligned: 36 Modelled: 36 Confidence: 12.9% Identity: 8% Fold: YugE-like Superfamily: YugE-like Family: YugE-like Phyre2 PDB 3qmz chain A Region: 261 - 331 Aligned: 71 Modelled: 71 Confidence: 12.6% Identity: 14% PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Phyre2 PDB 2pmz chain L Region: 128 - 178 Aligned: 51 Modelled: 51 Confidence: 12.5% Identity: 12% PDB header:translation, transferase Chain: L: PDB Molecule:dna-directed rna polymerase subunit l; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus Phyre2 PDB 1txq chain B domain 1 Region: 166 - 193 Aligned: 28 Modelled: 28 Confidence: 12.4% Identity: 29% Fold: EB1 dimerisation domain-like Superfamily: EB1 dimerisation domain-like Family: EB1 dimerisation domain-like Phyre2 PDB 1txq chain B Region: 166 - 193 Aligned: 28 Modelled: 28 Confidence: 12.4% Identity: 29% PDB header:structural protein/protein binding Chain: B: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: crystal structure of the eb1 c-terminal domain complexed2 with the cap-gly domain of p150glued Phyre2 1 c2uvaI_ 2 c3t97B_ 3 c2gl2B_ 4 c1jccC_ 5 c3pubA_ 6 d1wu9a1 7 c2w0cR_ 8 c1ce0B_ 9 c3ocaB_ 10 d1g3wa2 11 d2d0ta1 12 c3qu1B_ 13 c1ei3E_ 14 c1ws1A_ 15 c1gk6B_ 16 d1u84a_ 17 c3qmzA_ 18 c2pmzL_ 19 d1txqb1 20 c1txqB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2uvaI_ 49.7 17 PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 2 c3t97B_ 46.2 21 PDB header:protein transport Chain: B: PDB Molecule:nuclear pore complex protein nup54; PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54 3 c2gl2B_ 40.5 14 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 4 c1jccC_ 36.4 23 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 5 c3pubA_ 32.9 33 PDB header:unknown function Chain: A: PDB Molecule:30kda protein; PDBTitle: crystal structure of the bombyx mori low molecular weight lipoprotein2 7 (bmlp7) 6 d1wu9a1 26.1 27 Fold:EB1 dimerisation domain-like Superfamily:EB1 dimerisation domain-like Family:EB1 dimerisation domain-like 7 c2w0cR_ 24.5 37 PDB header:virus Chain: R: PDB Molecule:protein p3; PDBTitle: x-ray structure of the entire lipid-containing2 bacteriophage pm2 8 c1ce0B_ 22.8 32 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 9 c3ocaB_ 19.2 23 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis 10 d1g3wa2 17.0 8 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 11 d2d0ta1 16.0 16 Fold:Indolic compounds 2,3-dioxygenase-like Superfamily:Indolic compounds 2,3-dioxygenase-like Family:Indoleamine 2,3-dioxygenase-like 12 c3qu1B_ 15.1 11 PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:peptide deformylase 2; PDBTitle: peptide deformylase from vibrio cholerae 13 c1ei3E_ 14.0 11 PDB header: PDB COMPND: 14 c1ws1A_ 13.4 23 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase 1; PDBTitle: structure analysis of peptide deformylase from bacillus2 cereus 15 c1gk6B_ 13.0 20 PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) 16 d1u84a_ 12.9 8 Fold:YugE-like Superfamily:YugE-like Family:YugE-like 17 c3qmzA_ 12.6 14 PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain 18 c2pmzL_ 12.5 12 PDB header:translation, transferase Chain: L: PDB Molecule:dna-directed rna polymerase subunit l; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 19 d1txqb1 12.4 29 Fold:EB1 dimerisation domain-like Superfamily:EB1 dimerisation domain-like Family:EB1 dimerisation domain-like 20 c1txqB_ 12.4 29 PDB header:structural protein/protein binding Chain: B: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: crystal structure of the eb1 c-terminal domain complexed2 with the cap-gly domain of p150glued 21 c1u0iA_ not modelled 12.3 55 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 22 c3movB_ not modelled 11.6 11 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 23 c1gcmA_ not modelled 11.3 25 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 24 c3ag7A_ not modelled 11.3 22 PDB header:plant protein Chain: A: PDB Molecule:putative uncharacterized protein f9e10.5; PDBTitle: an auxilin-like j-domain containing protein, jac1 j-domain 25 c3u1aC_ not modelled 11.2 22 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 26 c3ca9A_ not modelled 11.2 18 PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine triphosphatase; PDBTitle: evolution of chlorella virus dutpase 27 c2cpbA_ not modelled 11.0 57 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 28 c1x8yA_ not modelled 10.4 13 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 29 c2ew7A_ not modelled 10.1 6 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of helicobacter pylori peptide deformylase 30 c1gcmC_ not modelled 9.8 25 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 31 c1ox3A_ not modelled 9.7 15 PDB header:chaperone Chain: A: PDB Molecule:fibritin; PDBTitle: crystal structure of mini-fibritin 32 c1gk4A_ not modelled 9.6 13 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 33 c2xv5A_ not modelled 9.5 13 PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment 34 c3g5pB_ not modelled 9.3 23 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: structure and activity of human mitochondrial peptide deformylase, a2 novel cancer target 35 c1ij1B_ not modelled 9.1 36 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 36 c1ij1C_ not modelled 9.1 36 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 37 c1ij1A_ not modelled 9.1 36 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 38 d1lmea_ not modelled 9.0 20 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 39 d1lm4a_ not modelled 9.0 20 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 40 c1gcmB_ not modelled 9.0 23 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 41 d1ix1a_ not modelled 8.9 26 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 42 d1ujka_ not modelled 8.7 9 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 43 d1zuea1 not modelled 8.7 31 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 44 c1ij0A_ not modelled 8.7 36 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 45 c1ij0B_ not modelled 8.7 36 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 46 c1ij0C_ not modelled 8.7 36 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 47 d1v54e_ not modelled 8.4 25 Fold:alpha-alpha superhelix Superfamily:Cytochrome c oxidase subunit E Family:Cytochrome c oxidase subunit E 48 d2defa_ not modelled 8.3 17 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 49 d1y6ha_ not modelled 8.2 20 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 50 c3g6nA_ not modelled 8.0 18 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of an efpdf complex with met-ala-ser 51 d3saka_ not modelled 7.9 17 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 52 c2y9zA_ not modelled 7.8 17 PDB header:transcription Chain: A: PDB Molecule:imitation switch protein 1 (del_atpase); PDBTitle: chromatin remodeling factor isw1a(del_atpase) in dna complex 53 c2w3tA_ not modelled 7.5 17 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: chloro complex of the ni-form of e.coli deformylase 54 c2ko6A_ not modelled 7.3 64 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yihd; PDBTitle: solution structure of protein sf3929 from shigella flexneri2 2a. northeast structural genomics consortium target3 sfr81/ontario center for structural proteomics target4 sf3929 55 c1zy1B_ not modelled 7.1 11 PDB header:hydrolase Chain: B: PDB Molecule:peptide deformylase, mitochondrial; PDBTitle: x-ray structure of peptide deformylase from arabidopsis2 thaliana (atpdf1a) in complex with met-ala-ser 56 c1deqF_ not modelled 6.9 12 PDB header: PDB COMPND: 57 d2gu3a2 not modelled 6.9 19 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:PepSY-like 58 c1gclB_ not modelled 6.8 25 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 59 c1gclA_ not modelled 6.8 25 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 60 c1gclC_ not modelled 6.8 25 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 61 c1gclD_ not modelled 6.8 25 PDB header:leucine zipper Chain: D: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 62 c3g9rF_ not modelled 6.7 33 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 63 c3ecyA_ not modelled 6.7 11 PDB header:hydrolase Chain: A: PDB Molecule:cg4584-pa, isoform a (bcdna.ld08534); PDBTitle: crystal structural analysis of drosophila melanogaster dutpase 64 c3ahrA_ not modelled 6.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:ero1-like protein alpha; PDBTitle: inactive human ero1 65 c1ic2B_ not modelled 6.7 26 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 66 c3f3hA_ not modelled 6.6 33 PDB header:antitumor protein Chain: A: PDB Molecule:immunomodulatory protein ling zhi-8; PDBTitle: crystal structure and anti-tumor activity of lz-8 from the fungus2 ganoderma lucidium 67 c2pjwV_ not modelled 6.5 7 PDB header:endocytosis/exocytosis Chain: V: PDB Molecule:vacuolar protein sorting-associated protein 27; PDBTitle: the vps27/hse1 complex is a gat domain-based scaffold for2 ubiquitin-dependent sorting 68 c3dldA_ not modelled 6.3 17 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of peptide deformylase, xoo1075, from2 xanthomonas oryzae pv. oryzae kacc10331 69 c1ij2C_ not modelled 6.3 36 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 70 c1unxA_ not modelled 6.3 25 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 71 c1rb1B_ not modelled 6.2 36 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 72 c1rb1A_ not modelled 6.2 36 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 73 c1swiA_ not modelled 6.2 36 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 74 c3k7zB_ not modelled 6.2 36 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 75 c1rb6C_ not modelled 6.2 36 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 76 c3k7zA_ not modelled 6.2 36 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 77 c3ieeA_ not modelled 6.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution 78 c1uo2A_ not modelled 6.1 25 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 79 c1w5iA_ not modelled 6.1 25 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 80 c3lvwA_ not modelled 6.0 30 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: glutathione-inhibited scgcl 81 c1unwB_ not modelled 6.0 25 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 82 c1ij3C_ not modelled 6.0 36 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 83 c1ij3B_ not modelled 6.0 36 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 84 c3hizB_ not modelled 5.9 15 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 85 c3cpmA_ not modelled 5.9 14 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase, chloroplast; PDBTitle: plant peptide deformylase pdf1b crystal structure 86 c1uo1A_ not modelled 5.9 25 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 87 c1uo1B_ not modelled 5.9 25 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 88 d1xeoa1 not modelled 5.9 17 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 89 c1ij2A_ not modelled 5.9 36 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 90 c1w5iB_ not modelled 5.8 25 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 91 c1uo2B_ not modelled 5.8 25 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 92 c1uo0A_ not modelled 5.8 25 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 93 c1uo0B_ not modelled 5.8 25 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 94 c1rb4C_ not modelled 5.7 36 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 95 c3lp6D_ not modelled 5.7 10 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 96 d1rl4a_ not modelled 5.7 14 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 97 d2axto1 not modelled 5.6 29 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:PsbO-like 98 c1ij2B_ not modelled 5.6 36 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 99 c1rb4A_ not modelled 5.5 36 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0