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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3qmzA_

Fold library idPDB HeaderMoleculeTitle
c3qmzA_PDB header: motor proteinChain: A: PDB Molecule: cytoplasmic dynein heavy chain;PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain


Added to library: Sat Mar 19 09:33:49 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EFVIEKSLNRIKKFWKEAQEHSSGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTK
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Known secondary structure (DSSP)




TT


SS

SSTTTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDT
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Known secondary structure (DSSP)

SSTTTSTS
SS


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence TLKLTIDSLKMIKSSLSTFLERQRRDDLLKIIGSGKHHDQVSKFMKKMFGSDFITGVRSVEAQEWLNILD
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Known secondary structure (DSSP)






TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence TEIKLSVFTQFRDCLGQLKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCKYWKEVDMKIKGLLDKLNK
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Known secondary structure (DSSP) TTTSTT
SS


 .........290.........300.........310.........320.........330.........340.........350
Sequence SDNVKKKIEALLVEYLHFNNVIGQRLLWAKVQKFYLNSVFISQSGYLLLIGFATLTDSLHQKYGGCFFGP
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Known secondary structure (DSSP)

S





SS




TTTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence AGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQ
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Known secondary structure (DSSP) TTSSTSS







SSSS
STT




TTTTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence IQNGLQVGKSHITLLEEETPLSPHTAVFITLLPENLKKSFREFSMKSQSGTIAEMILQIMGFEDSKSLAS
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Known secondary structure (DSSP) TSTTSSS




SS












TTT




TSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVESLKRVILPSLGDTDELVFKDE
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Known secondary structure (DSSP)

SSS







SS
SS

SSSSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LSKSKAIVQCLKDAGEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVID
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Known secondary structure (DSSP)



SS




TTSSTTTSS





 .........640.........650.........660.........670.........680.........690.........700
Sequence TKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKG
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Known secondary structure (DSSP) SSS
TTSSSSSS


SSTT




SS

SS




SS
S
STTTT
B


 .........710.........720.........730.........740.........750.........760.........770
Sequence ERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFD
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Known secondary structure (DSSP)

B







S

STTTTS





S
SS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence MASLTNIFTCSNVRTFNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQ
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Known secondary structure (DSSP)



TTTTTSS

TTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence RAFIQTINTYFGHDSQELSDDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRG
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Known secondary structure (DSSP) TS
SS


S
SSSSSS
S
S





GGGTTTTT


STT

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVIKNLVLFCVVLFLRQLME
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Known secondary structure (DSSP)

SSSSTT
SS




SS


TTTTTT




S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIYPSGKSLSQIYEIYYKAIFKLVPEF
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Known secondary structure (DSSP)



SS








SSSSSTTTTS

STS


SSS

SS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRI
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Known secondary structure (DSSP) TS
TTTSSS
S
S
SSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FAVKEKNSFEQLLYETVDKYLPNQDLGNISSTNKTDLVNFIEERFKTFCDEEPMVIHESMVDHILRIDRA
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Known secondary structure (DSSP)


SSS




SS






TTTT





T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIID
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Known secondary structure (DSSP) SSSS
SSTTS
SS

TTTS
TTTTSSS
S
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence ESNILETAFLERMNTLLANDLFQGEEYDKLLNNLRNKTRDTEQELYDWFVGEIAKNLHVVFTICDPTNNK
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Known secondary structure (DSSP) GGGS
T




TTTS




STTT




SSSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SSAMISSPALFNRCIINWMTKTMSQVANNMVDVVPMEFTDFIVPEVNKELVFTEPIQTIRDPGYFIDGLR
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Known secondary structure (DSSP) TT






TTSS


SSS
SS


GGG
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ALVKLVTAKYQDLQENQRFVNVGLEKLNESVLEASISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIIS
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Known secondary structure (DSSP)

 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence SIYETYFGHLNERERGDMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGYFLENMSIVMNSQV
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Known secondary structure (DSSP) T

TTSSSS
S


SSTTSSST

TS





 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence PFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAVRFGSVVIIQDGEFFDPIISRLISREFNRVT
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Known secondary structure (DSSP)



SSS
S
SS

TTSS
TTSS

S



T

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence VEIGDHEVKLFIHSCDPSGDIPIFLRSRVRLVHFVTSIETRIFDITLTEENAEMQRKREDLIKLNTEYRL
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Known secondary structure (DSSP)
SS






S
ST









S

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence KLKNLEKRLLEELNNDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKF
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Known secondary structure (DSSP)

STTSST
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence GQFHWFYGISIGQFLSCFKRVFIKTRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTMFCLYKFD
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Known secondary structure (DSSP)
STT

S
SS


SSTSSS
S

TT
SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence IESEQLTVDTNDDLRYLWDYVTTKSYISALNWFKNWNIADVVANSENNYFTMASEDGTFKLIELAKASKE
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Known secondary structure (DSSP) SSS





TTSSSS


TTTS





T
SS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence SLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEKMFMTCHLTGDK
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Known secondary structure (DSSP)





SS
SS
SS


TT





SS






S

 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LPAPLLQRTDRVVYEDIPGILDTVKDLWGSQFFTGSGVWSVYCTFLLSWFHALITARDCDFQFASVYLEN
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Known secondary structure (DSSP)

TT







S






 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence VLAPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCDNLQIVPGVRIPQPLLQQSEEEERARLTAIA
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Known secondary structure (DSSP)


TT
SSSSTT








TT


 .........2110.........2120.........2130......
Sequence DSLSSWLQLPRESILDYERLQAKEVASSTEQLLQEM
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Known secondary structure (DSSP)

SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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