PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pubA_

Fold library id	PDB Header	Molecule	Title
c3pubA_	PDB header: unknown function	Chain: A: PDB Molecule: 30kda protein;	PDBTitle: crystal structure of the bombyx mori low molecular weight lipoprotein2 7 (bmlp7)

Links to external resources
Added to library: Sat Jun 4 09:08:41 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V P N D I L E E Q L Y N S I V V A D Y D S A V E K S K H L Y E E K K S E V I T N V V N K L I R N N K M N C M E Y A Y Q L W L Q G S K D I V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D C F P V E F R L I F A E N A I K L M Y K R D G L A L T L S N D V H G N D G R L A F G D G K D K T S P K V S W K F I A L W E N N K V Y F K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T T T
T T S
S S
S S S G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L N T E R N Q Y L V L G V G T N P N G D H M A F G V N S V D S F R A Q W Y L Q P A K Y D K D N L F Y I Y N R E Y S K A L T L S R T L E T S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
T T S
S
S G G G
T T T T T
S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence N R M A W G Y N G R V I G S P E H Y A W G V K A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	P	N	D	I	L	E	E	Q	L	Y	N	S	I	V	V	A	D	Y	D	S	A	V	E	K	S	K	H	L	Y	E	E	K	K	S	E	V	I	T	N	V	V	N	K	L	I	R	N	N	K	M	N	C	M	E	Y	A	Y	Q	L	W	L	Q	G	S	K	D	I	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T															T	T															T	T		T												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	C	F	P	V	E	F	R	L	I	F	A	E	N	A	I	K	L	M	Y	K	R	D	G	L	A	L	T	L	S	N	D	V	H	G	N	D	G	R	L	A	F	G	D	G	K	D	K	T	S	P	K	V	S	W	K	F	I	A	L	W	E	N	N	K	V	Y	F	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									T	T								T	T	T	T											T	T	S								S	S		S	S	S	G	G	G										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	N	T	E	R	N	Q	Y	L	V	L	G	V	G	T	N	P	N	G	D	H	M	A	F	G	V	N	S	V	D	S	F	R	A	Q	W	Y	L	Q	P	A	K	Y	D	K	D	N	L	F	Y	I	Y	N	R	E	Y	S	K	A	L	T	L	S	R	T	L	E	T	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T											T	T	S								S				S	G	G	G										T	T									T	T	T								S	S			T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	N	R	M	A	W	G	Y	N	G	R	V	I	G	S	P	E	H	Y	A	W	G	V	K	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S			T	T