Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP26266
DateThu Jan 5 11:42:50 GMT 2012
Unique Job ID1d20f32957d51675

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d3b8ma1
Top template information
Fold:Ferredoxin-like
Superfamily:Bacterial polysaccharide co-polymerase-like
Family:FepE-like
Confidence and coverage
Confidence: 99.8% Coverage: 68%
255 residues ( 68% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI
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Disorder  ??????????????????????????

































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   .........70.........80.........90.........100.........110.........120
Sequence  LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY
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Disorder 


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   .........130.........140.........150.........160.........170.........180
Sequence  LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT
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   .........190.........200.........210.........220.........230.........240
Sequence  SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL
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   .........250.........260.........270.........280.........290.........300
Sequence  NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN
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   .........310.........320.........330.........340.........350.........360
Sequence  RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR
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   .........370.......
Sequence  YAMASRKQDAMMADHLV
Secondary structure 






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Disorder 





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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3b8m chain A domain 1

3D model

Region: 64 - 330
Aligned: 255
Modelled: 267
Confidence: 99.8%
Identity: 97%
Fold: Ferredoxin-like
Superfamily: Bacterial polysaccharide co-polymerase-like
Family: FepE-like

Phyre2

PDB 3b8o chain A domain 1

3D model

Region: 64 - 334
Aligned: 221
Modelled: 233
Confidence: 99.2%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: Bacterial polysaccharide co-polymerase-like
Family: FepE-like

Phyre2

PDB 3b8p chain A domain 1

3D model

Region: 64 - 336
Aligned: 206
Modelled: 212
Confidence: 99.2%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: Bacterial polysaccharide co-polymerase-like
Family: FepE-like

Phyre2

PDB 2yl4 chain A

3D model

Region: 28 - 60
Aligned: 33
Modelled: 33
Confidence: 63.4%
Identity: 9%
PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10

Phyre2

PDB 2rmz chain A

3D model

Region: 330 - 359
Aligned: 28
Modelled: 30
Confidence: 61.7%
Identity: 29%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment

Phyre2

PDB 2klu chain A

3D model

Region: 330 - 369
Aligned: 38
Modelled: 38
Confidence: 56.6%
Identity: 13%
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4

Phyre2

PDB 2qts chain A

3D model

Region: 340 - 363
Aligned: 24
Modelled: 24
Confidence: 54.2%
Identity: 4%
PDB header:membrane protein
Chain: A: PDB Molecule:acid-sensing ion channel;
PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph

Phyre2

PDB 2hyd chain A domain 2

3D model

Region: 29 - 60
Aligned: 32
Modelled: 32
Confidence: 50.5%
Identity: 9%
Fold: ABC transporter transmembrane region
Superfamily: ABC transporter transmembrane region
Family: ABC transporter transmembrane region

Phyre2

PDB 2k1k chain A

3D model

Region: 343 - 367
Aligned: 25
Modelled: 25
Confidence: 48.9%
Identity: 20%
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3

Phyre2

PDB 2k1l chain A

3D model

Region: 343 - 367
Aligned: 25
Modelled: 25
Confidence: 48.9%
Identity: 20%
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3

Phyre2

PDB 2k1l chain B

3D model

Region: 343 - 367
Aligned: 25
Modelled: 25
Confidence: 48.9%
Identity: 20%
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3

Phyre2

PDB 2k1k chain B

3D model

Region: 343 - 367
Aligned: 25
Modelled: 25
Confidence: 48.9%
Identity: 20%
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3

Phyre2

PDB 2k21 chain A

3D model

Region: 340 - 370
Aligned: 31
Modelled: 31
Confidence: 43.3%
Identity: 10%
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c

Phyre2

PDB 2hyd chain B

3D model

Region: 29 - 60
Aligned: 32
Modelled: 32
Confidence: 36.5%
Identity: 9%
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866

Phyre2

PDB 1pf4 chain A domain 2

3D model

Region: 28 - 60
Aligned: 33
Modelled: 33
Confidence: 35.8%
Identity: 9%
Fold: ABC transporter transmembrane region
Superfamily: ABC transporter transmembrane region
Family: ABC transporter transmembrane region

Phyre2

PDB 2knc chain A

3D model

Region: 341 - 368
Aligned: 28
Modelled: 28
Confidence: 33.2%
Identity: 18%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2

PDB 3hd7 chain A

3D model

Region: 30 - 62
Aligned: 33
Modelled: 33
Confidence: 29.6%
Identity: 15%
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1

Phyre2

PDB 3g5u chain B

3D model

Region: 27 - 62
Aligned: 36
Modelled: 36
Confidence: 28.5%
Identity: 11%
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding

Phyre2

PDB 1v54 chain D

3D model

Region: 327 - 363
Aligned: 37
Modelled: 37
Confidence: 27.7%
Identity: 8%
Fold: Single transmembrane helix
Superfamily: Mitochondrial cytochrome c oxidase subunit IV
Family: Mitochondrial cytochrome c oxidase subunit IV

Phyre2

PDB 2y69 chain Q

3D model

Region: 327 - 363
Aligned: 37
Modelled: 37
Confidence: 27.3%
Identity: 8%
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen

Phyre2
1

d3b8ma1
2

d3b8oa1
3

d3b8pa1
4

c2yl4A_
5

c2rmzA_
6

c2kluA_
7

c2qtsA_
8

d2hyda2
9

c2k1kA_
10

c2k1lA_
11

c2k1lB_
12

c2k1kB_
13

c2k21A_
14

c2hydB_
15

d1pf4a2
16

c2kncA_
17

c3hd7A_
18

c3g5uB_
19

d1v54d_
20

c2y69Q_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3b8ma1



99.8 97 Fold:Ferredoxin-like
Superfamily:Bacterial polysaccharide co-polymerase-like
Family:FepE-like
2d3b8oa1



99.2 19 Fold:Ferredoxin-like
Superfamily:Bacterial polysaccharide co-polymerase-like
Family:FepE-like
3d3b8pa1



99.2 26 Fold:Ferredoxin-like
Superfamily:Bacterial polysaccharide co-polymerase-like
Family:FepE-like
4c2yl4A_



63.4 9 PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
5c2rmzA_



61.7 29 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
6c2kluA_



56.6 13 PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
7c2qtsA_



54.2 4 PDB header:membrane protein
Chain: A: PDB Molecule:acid-sensing ion channel;
PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph
8d2hyda2



50.5 9 Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region
9c2k1kA_



48.9 20 PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
10c2k1lA_



48.9 20 PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
11c2k1lB_



48.9 20 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
12c2k1kB_



48.9 20 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
13c2k21A_



43.3 10 PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
14c2hydB_



36.5 9 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
15d1pf4a2



35.8 9 Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region
16c2kncA_



33.2 18 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
17c3hd7A_



29.6 15 PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
18c3g5uB_



28.5 11 PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
19d1v54d_



27.7 8 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
20c2y69Q_



27.3 8 PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
21d3b60a2



not modelled 26.5 13 Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region
22d1rhzb_



not modelled 22.9 13 Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
23c3ij4A_



not modelled 22.7 13 PDB header:transport protein
Chain: A: PDB Molecule:amiloride-sensitive cation channel 2, neuronal;
PDBTitle: cesium sites in the crystal structure of a functional acid2 sensing ion channel in the desensitized state
24c2l34B_



not modelled 21.6 21 PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
25c2l34A_



not modelled 21.6 21 PDB header:protein binding
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
26d1y5ic1



not modelled 19.9 11 Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
27c3b5wE_



not modelled 17.5 13 PDB header:membrane protein
Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of eschericia coli msba
28d1v54m_



not modelled 17.1 17 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
29c2y69Z_



not modelled 16.5 17 PDB header:electron transport
Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
30c3sc0A_



not modelled 16.1 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin
31c1vf5R_



not modelled 15.4 22 PDB header:photosynthesis
Chain: R: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
32d2e74e1



not modelled 15.4 22 Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex
33c1vf5E_



not modelled 15.4 22 PDB header:photosynthesis
Chain: E: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
34c2e74E_



not modelled 15.4 22 PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
35c2e75E_



not modelled 15.4 22 PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
36c2e76E_



not modelled 15.4 22 PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
37d1v54g_



not modelled 15.0 8 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIa
Family:Mitochondrial cytochrome c oxidase subunit VIa
38c3k07A_



not modelled 13.1 13 PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
39d2r6gf1



not modelled 12.0 10 Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
40c3b5xB_



not modelled 11.2 9 PDB header:membrane protein
Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of msba from vibrio cholerae
41c2l35B_



not modelled 10.5 13 PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
42c2l2tA_



not modelled 10.4 15 PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
43c2k1aA_



not modelled 10.4 9 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
44d1v54l_



not modelled 10.3 11 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
Family:Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
45c2l35A_



not modelled 10.2 21 PDB header:protein binding
Chain: A: PDB Molecule:dap12-nkg2c_tm;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
46c2yvxD_



not modelled 9.5 0 PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
47d1xrda1



not modelled 9.4 19 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
48d1pw4a_



not modelled 9.2 16 Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
49c1kqfB_



not modelled 8.8 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
50d1rh5b_



not modelled 8.5 14 Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
51c2ht2B_



not modelled 8.3 9 PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
52c2y69Y_



not modelled 8.3 10 PDB header:electron transport
Chain: Y: PDB Molecule:cytochrome c oxidase subunit 7c;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
53c2kb1A_



not modelled 8.0 13 PDB header:membrane protein
Chain: A: PDB Molecule:wsk3;
PDBTitle: nmr studies of a channel protein without membrane:2 structure and dynamics of water-solubilized kcsa
54d1otsa_



not modelled 7.8 9 Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
55c2wwbC_



not modelled 7.5 22 PDB header:ribosome
Chain: C: PDB Molecule:protein transport protein sec61 subunit beta;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome
56c2wwbB_



not modelled 7.5 16 PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome
57c1m2zE_



not modelled 7.3 25 PDB header:hormone/hormone activator
Chain: E: PDB Molecule:nuclear receptor coactivator 2;
PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif
58c1ps9A_



not modelled 7.1 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
59c2jwaA_



not modelled 6.9 20 PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
60d2e74d2



not modelled 6.9 13 Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
61d1o73a_



not modelled 6.7 19 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
62c3ipdB_



not modelled 6.7 12 PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
63c2kvlA_



not modelled 6.6 19 PDB header:viral protein
Chain: A: PDB Molecule:major outer capsid protein vp7;
PDBTitle: nmr structure of the c-terminal domain of vp7
64c1m2zB_



not modelled 6.6 25 PDB header:hormone/hormone activator
Chain: B: PDB Molecule:nuclear receptor coactivator 2;
PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif
65c2k9yA_



not modelled 6.5 14 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
66c2k9yB_



not modelled 6.5 14 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
67c1xl6B_



not modelled 6.5 13 PDB header:metal transport
Chain: B: PDB Molecule:inward rectifier potassium channel;
PDBTitle: intermediate gating structure 2 of the inwardly rectifying k+ channel2 kirbac3.1
68c2j7aC_



not modelled 6.5 5 PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
69c1iijA_



not modelled 6.4 13 PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
70d1nwaa_



not modelled 6.3 13 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
71c1nwaA_



not modelled 6.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
72c2o01L_



not modelled 6.3 13 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem i reaction center subunit xi,
PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution
73c3p5nA_



not modelled 6.1 8 PDB header:transport protein
Chain: A: PDB Molecule:riboflavin uptake protein;
PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter
74d2yvxa3



not modelled 6.1 8 Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
75d1fftb2



not modelled 6.0 10 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
76c2ks1B_



not modelled 6.0 29 PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
77c1fvaA_



not modelled 5.8 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of bovine methionine sulfoxide reductase
78c2gqcA_



not modelled 5.7 31 PDB header:hydrolase
Chain: A: PDB Molecule:rhomboid intramembrane protease;
PDBTitle: solution structure of the n-terminal domain of rhomboid intramembrane2 protease from p. aeruginosa
79c3a0hx_



not modelled 5.7 11 PDB header:electron transport
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: crystal structure of i-substituted photosystem ii complex
80c3a0bX_



not modelled 5.7 11 PDB header:electron transport
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: crystal structure of br-substituted photosystem ii complex
81c3a0hX_



not modelled 5.7 11 PDB header:electron transport
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: crystal structure of i-substituted photosystem ii complex
82c3a0bx_



not modelled 5.7 11 PDB header:electron transport
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: crystal structure of br-substituted photosystem ii complex
83c1q2iA_



not modelled 5.7 26 PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
84d1kqfb2



not modelled 5.7 6 Fold:Single transmembrane helix
Superfamily:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Family:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
85c3jycA_



not modelled 5.5 7 PDB header:metal transport
Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2;
PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution
86c3ghfA_



not modelled 5.5 9 PDB header:cell cycle
Chain: A: PDB Molecule:septum site-determining protein minc;
PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium
87c2h4bC_



not modelled 5.4 29 PDB header:de novo protein
Chain: C: PDB Molecule:pancreatic hormone;
PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide
88c2h3sB_



not modelled 5.4 29 PDB header:de novo protein
Chain: B: PDB Molecule:pancreatic hormone;
PDBTitle: cis-azobenzene-avian pancreatic polypeptide bound to dpc2 micelles
89c2h4bD_



not modelled 5.4 29 PDB header:de novo protein
Chain: D: PDB Molecule:pancreatic hormone;
PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide
90d1q90d_



not modelled 5.4 14 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
91c2j89A_



not modelled 5.4 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
92d1reoa1



not modelled 5.4 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
93c2kncB_



not modelled 5.4 18 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
94c1xopA_



not modelled 5.3 30 PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: nmr structure of g1v mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5
95c1s5lx_



not modelled 5.3 11 PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii psbx protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
96c3bqhA_



not modelled 5.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
97d3cmna1



not modelled 5.2 26 Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Caur0242-like
98d1lfma_



not modelled 5.2 8 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
99d2pila_



not modelled 5.2 6 Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0