Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	A	L	T	A	V	Q	N	N	A	V	D	S	G	Q	D	Y	S	G	F	T	L	T	P	S	A	Q	S	P	R	L	L	E	L	T	F	T	E	Q	T	T	K	Q	F	L	E	Q	V	A	E	W	P	V	Q	A	L	E	Y	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	F	L	R	F	R	V	A	K	I	L	D	D	L	C	A	N	Q	L	Q	P	L	L	L	K	T	L	L	N	R	A	E	G	A	L	L	I	N	A	V	G	V	D	D	V	K	Q	A	D	E	M	V	K	L	A	T	A	V	A	H
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?			?									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	I	G	R	S	N	F	D	A	M	S	G	Q	Y	Y	A	R	F	V	V	K	N	V	D	N	S	D	S	Y	L	R	Q	P	H	R	V	M	E	L	H	N	D	G	T	Y	V	E	E	I	T	D	Y	V	L	M	M	K	I	D	E
Secondary structure
SS confidence
Disorder						?	?		?												?	?	?	?	?	?	?	?	?				?																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	N	M	Q	G	G	N	S	L	L	L	H	L	D	D	W	E	H	L	D	N	Y	F	R	H	P	L	A	R	R	P	M	R	F	A	A	P	P	S	K	N	V	S	K	D	V	F	H	P	V	F	D	V	D	Q	Q	G	R	P	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																							?			?	?	?				?			?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	R	Y	I	D	Q	F	V	Q	P	K	D	F	E	E	G	V	W	L	S	E	L	S	D	A	I	E	T	S	K	G	I	L	S	V	P	V	P	V	G	K	F	L	L	I	N	N	L	F	W	L	H	G	R	D	R	F	T	P	H
Secondary structure
SS confidence
Disorder										?	?	?																																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Sequence		P	D	L	R	R	E	L	M	R	Q	R	G	Y	F	A	Y	A	S	N	H	Y	Q	T	H	Q
Secondary structure
SS confidence
Disorder		?																		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jr7 chain A Region: 15 - 325 Aligned: 306 Modelled: 311 Confidence: 100.0% Identity: 99% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Gab protein (hypothetical protein YgaT) Phyre2 PDB 3ms5 chain A Region: 69 - 314 Aligned: 224 Modelled: 231 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) Phyre2 PDB 2og5 chain A Region: 33 - 311 Aligned: 268 Modelled: 277 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) Phyre2 PDB 1ds1 chain A Region: 38 - 311 Aligned: 268 Modelled: 271 Confidence: 100.0% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Clavaminate synthase Phyre2 PDB 2wbq chain A Region: 31 - 311 Aligned: 272 Modelled: 280 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine Phyre2 PDB 1oih chain A Region: 74 - 311 Aligned: 206 Modelled: 218 Confidence: 100.0% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TauD/TfdA-like Phyre2 PDB 1otj chain A Region: 74 - 314 Aligned: 222 Modelled: 241 Confidence: 100.0% Identity: 17% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: TauD/TfdA-like Phyre2 PDB 3eat chain X Region: 71 - 311 Aligned: 216 Modelled: 236 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa Phyre2 PDB 3pvj chain B Region: 74 - 314 Aligned: 222 Modelled: 230 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 Phyre2 PDB 3r1j chain B Region: 73 - 314 Aligned: 195 Modelled: 207 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form Phyre2 PDB 1nx4 chain A Region: 71 - 311 Aligned: 209 Modelled: 219 Confidence: 100.0% Identity: 18% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: gamma-Butyrobetaine hydroxylase Phyre2 PDB 1y0z chain A Region: 75 - 310 Aligned: 214 Modelled: 226 Confidence: 99.9% Identity: 21% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: gamma-Butyrobetaine hydroxylase Phyre2 PDB 3pl0 chain B Region: 158 - 296 Aligned: 59 Modelled: 67 Confidence: 94.1% Identity: 36% PDB header:biosynthetic protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution Phyre2 PDB 1wdi chain A Region: 277 - 311 Aligned: 35 Modelled: 35 Confidence: 92.5% Identity: 17% Fold: QueA-like Superfamily: QueA-like Family: QueA-like Phyre2 PDB 1yy3 chain A Region: 277 - 294 Aligned: 18 Modelled: 18 Confidence: 92.1% Identity: 33% PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) Phyre2 PDB 1vky chain A Region: 277 - 294 Aligned: 18 Modelled: 18 Confidence: 91.0% Identity: 22% Fold: QueA-like Superfamily: QueA-like Family: QueA-like Phyre2 PDB 2fct chain A domain 1 Region: 268 - 311 Aligned: 43 Modelled: 44 Confidence: 84.5% Identity: 12% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 2opw chain A Region: 273 - 311 Aligned: 36 Modelled: 39 Confidence: 79.5% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Phyre2 PDB 2a1x chain A domain 1 Region: 267 - 318 Aligned: 49 Modelled: 52 Confidence: 73.1% Identity: 14% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 2rds chain A Region: 266 - 321 Aligned: 54 Modelled: 56 Confidence: 69.4% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound Phyre2 1 d1jr7a_ 2 c3ms5A_ 3 c2og5A_ 4 d1ds1a_ 5 c2wbqA_ 6 d1oiha_ 7 d1otja_ 8 c3eatX_ 9 c3pvjB_ 10 c3r1jB_ 11 d1nx4a_ 12 d1y0za_ 13 c3pl0B_ 14 d1wdia_ 15 c1yy3A_ 16 d1vkya_ 17 d2fcta1 18 c2opwA_ 19 d2a1xa1 20 c2rdsA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jr7a_ 100.0 99 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 2 c3ms5A_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 3 c2og5A_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 4 d1ds1a_ 100.0 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 5 c2wbqA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 6 d1oiha_ 100.0 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 7 d1otja_ 100.0 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 8 c3eatX_ 100.0 18 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 9 c3pvjB_ 100.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 10 c3r1jB_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 11 d1nx4a_ 100.0 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 12 d1y0za_ 99.9 21 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 13 c3pl0B_ 94.1 36 PDB header:biosynthetic protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution 14 d1wdia_ 92.5 17 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 15 c1yy3A_ 92.1 33 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 16 d1vkya_ 91.0 22 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 17 d2fcta1 84.5 12 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 18 c2opwA_ 79.5 19 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 19 d2a1xa1 73.1 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 20 c2rdsA_ 69.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound 21 c3emrA_ not modelled 68.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens 22 c3gjbA_ not modelled 67.9 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 23 c3nnlB_ not modelled 54.2 16 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 24 c2fg0B_ not modelled 50.5 10 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 25 d1v9la2 not modelled 43.8 19 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 26 d2evra2 not modelled 37.5 9 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 27 c3npfB_ not modelled 32.6 19 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 28 d1dqua_ not modelled 29.8 25 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 29 c2xivA_ not modelled 28.6 13 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 30 d1f61a_ not modelled 27.7 27 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 31 d1ywka1 not modelled 25.5 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 32 c3gt2A_ not modelled 25.5 6 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 33 c2dbiA_ not modelled 23.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli 34 c1yo8A_ not modelled 23.5 13 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-2; PDBTitle: structure of the c-terminal domain of human thrombospondin-2 35 d1xnea_ not modelled 19.6 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 36 c3rcqA_ not modelled 19.1 25 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a 37 d2axte1 not modelled 18.7 36 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 38 d1fw8a_ not modelled 18.4 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 39 d1s04a_ not modelled 18.1 6 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 40 d16pka_ not modelled 18.0 21 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 41 c3ndhA_ not modelled 17.8 23 PDB header:hydrolase/dna Chain: A: PDB Molecule:restriction endonuclease thai; PDBTitle: restriction endonuclease in complex with substrate dna 42 c2k1gA_ not modelled 17.4 20 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 43 c3pbiA_ not modelled 16.8 13 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 44 c1zmrA_ not modelled 16.7 21 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 45 d1b26a2 not modelled 16.7 19 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 46 d1te5a_ not modelled 16.6 17 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 47 d1l1fa2 not modelled 16.2 21 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 48 d1vpea_ not modelled 16.1 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 49 d1e5ra_ not modelled 15.5 6 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Type II Proline 3-hydroxylase (proline oxidase) 50 d1phpa_ not modelled 14.9 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 51 d1hdia_ not modelled 14.9 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 52 c1ywkE_ not modelled 14.7 14 PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis 53 d1v6sa_ not modelled 14.6 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 54 d1qpga_ not modelled 14.3 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 55 c3lvwA_ not modelled 14.2 7 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: glutathione-inhibited scgcl 56 c3f1zF_ not modelled 13.6 24 PDB header:dna binding protein Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein; PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution 57 d1ltka_ not modelled 13.6 21 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 58 c3uyjA_ not modelled 13.6 38 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 59 c1ux6A_ not modelled 13.4 11 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-1; PDBTitle: structure of a thrombospondin c-terminal fragment reveals a2 novel calcium core in the type 3 repeats 60 c2jijA_ not modelled 13.3 24 PDB header:hydrolase Chain: A: PDB Molecule:prolyl-4 hydroxylase; PDBTitle: crystal structure of the apo form of chlamydomonas2 reinhardtii prolyl-4 hydroxylase type i 61 c3i86A_ not modelled 12.8 15 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 62 d1vjda_ not modelled 12.8 29 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 63 c3itqB_ not modelled 12.6 36 PDB header:oxidoreductase Chain: B: PDB Molecule:prolyl 4-hydroxylase, alpha subunit domain protein; PDBTitle: crystal structure of a prolyl 4-hydroxylase from bacillus anthracis 64 c3aicC_ not modelled 11.8 23 PDB header:transferase Chain: C: PDB Molecule:glucosyltransferase-si; PDBTitle: crystal structure of glucansucrase from streptococcus mutans 65 c3al6A_ not modelled 11.7 23 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 66 d2toda1 not modelled 11.7 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 67 c1wtaA_ not modelled 11.6 11 PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) 68 c3q3vA_ not modelled 11.5 36 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 69 c2w8iG_ not modelled 11.4 0 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 70 c3h41A_ not modelled 11.0 13 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 71 d1bvua2 not modelled 11.0 14 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 72 d1vrba1 not modelled 10.9 23 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 73 d1njjb1 not modelled 10.7 36 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 74 d1cb0a_ not modelled 10.5 7 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 75 d1gtma2 not modelled 10.4 17 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 76 c3cvoA_ not modelled 10.3 15 PDB header:transferase Chain: A: PDB Molecule:methyltransferase-like protein of unknown function; PDBTitle: crystal structure of a methyltransferase-like protein (spo2022) from2 silicibacter pomeroyi dss-3 at 1.80 a resolution 77 d1h2ka_ not modelled 10.3 31 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 78 c2cunA_ not modelled 10.1 21 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 79 c3k2oB_ not modelled 9.9 15 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 80 c2zpmA_ not modelled 9.8 7 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 81 d1n8ja_ not modelled 9.4 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 82 c2x4iA_ not modelled 9.2 12 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein 114; PDBTitle: orf 114a from sulfolobus islandicus rudivirus 1 83 c2bnoA_ not modelled 9.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 84 d1euza2 not modelled 9.0 15 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 85 d7odca1 not modelled 8.9 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 86 d1gph12 not modelled 8.9 29 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 87 d1v4na_ not modelled 8.3 10 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 88 c2bf9A_ not modelled 8.2 10 PDB header:hormone Chain: A: PDB Molecule:pancreatic hormone; PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution. 89 c2p1gA_ not modelled 8.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 90 d1bgva2 not modelled 8.0 9 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 91 c3e5bB_ not modelled 7.8 25 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 92 c3bvcA_ not modelled 7.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ism_01780; PDBTitle: crystal structure of uncharacterized protein ism_01780 from2 roseovarius nubinhibens ism 93 d1f3ta1 not modelled 7.6 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 94 c3khsB_ not modelled 7.6 16 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 95 c1xjvA_ not modelled 7.4 43 PDB header:transcription/dna Chain: A: PDB Molecule:protection of telomeres 1; PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag) 96 c3kw0D_ not modelled 7.4 20 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 97 c3dkqB_ not modelled 7.2 19 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 98 c1ronA_ not modelled 7.2 29 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide y; PDBTitle: nmr solution structure of human neuropeptide y 99 c1z7hA_ not modelled 7.0 18 PDB header:hydrolase Chain: A: PDB Molecule:tetanus toxin light chain; PDBTitle: 2.3 angstrom crystal structure of tetanus neurotoxin light2 chain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0