Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	L	T	K	A	E	M	S	E	Y	L	F	D	K	L	G	L	S	K	R	D	A	K	E	L	V	E	L	F	F	E	E	I	R	R	A	L	E	N	G	E	Q	V	K	L	S	G	F	G	N	F	D	L	R	D	K	N	Q	R
Secondary structure
SS confidence
Disorder		?	?	?	?																																						?														?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Sequence		P	G	R	N	P	K	T	G	E	D	I	P	I	T	A	R	R	V	V	T	F	R	P	G	Q	K	L	K	S	R	V	E	N	A	S	P	K	D	E
Secondary structure
SS confidence
Disorder			?	?	?	?			?						?	?	?																?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1owf chain A Region: 2 - 97 Aligned: 96 Modelled: 96 Confidence: 99.9% Identity: 100% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2iif chain A Region: 2 - 94 Aligned: 93 Modelled: 93 Confidence: 99.9% Identity: 98% PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna Phyre2 PDB 3c4i chain A Region: 3 - 99 Aligned: 97 Modelled: 97 Confidence: 99.9% Identity: 37% PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] Phyre2 PDB 1p71 chain A Region: 3 - 95 Aligned: 93 Modelled: 93 Confidence: 99.9% Identity: 33% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1owf chain B Region: 3 - 94 Aligned: 92 Modelled: 92 Confidence: 99.9% Identity: 32% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2np2 chain B Region: 2 - 95 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 33% PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex Phyre2 PDB 1exe chain A Region: 3 - 98 Aligned: 96 Modelled: 96 Confidence: 99.9% Identity: 27% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1huu chain A Region: 3 - 92 Aligned: 80 Modelled: 90 Confidence: 99.8% Identity: 41% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1mul chain A Region: 3 - 92 Aligned: 76 Modelled: 76 Confidence: 99.8% Identity: 32% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2o97 chain B domain 1 Region: 3 - 92 Aligned: 71 Modelled: 72 Confidence: 99.7% Identity: 28% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1b8z chain A Region: 3 - 92 Aligned: 67 Modelled: 67 Confidence: 99.6% Identity: 37% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1o17 chain A domain 1 Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 47.7% Identity: 23% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1z67 chain A domain 1 Region: 6 - 44 Aligned: 39 Modelled: 39 Confidence: 47.3% Identity: 26% Fold: YidB-like Superfamily: YidB-like Family: YidB-like Phyre2 PDB 1dul chain A Region: 2 - 32 Aligned: 31 Modelled: 27 Confidence: 46.8% Identity: 19% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 1brw chain A domain 1 Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 46.2% Identity: 13% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1hq1 chain A Region: 2 - 32 Aligned: 31 Modelled: 31 Confidence: 45.9% Identity: 23% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 1qzx chain A domain 2 Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 44.7% Identity: 24% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 1nri chain A Region: 2 - 51 Aligned: 50 Modelled: 50 Confidence: 44.3% Identity: 18% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 1nri chain A Region: 2 - 51 Aligned: 50 Modelled: 50 Confidence: 44.3% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae Phyre2 PDB 1qb2 chain A Region: 2 - 32 Aligned: 31 Modelled: 31 Confidence: 42.0% Identity: 23% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 1 d1owfa_ 2 c2iifA_ 3 c3c4iA_ 4 d1p71a_ 5 d1owfb_ 6 c2np2B_ 7 d1exea_ 8 d1huua_ 9 d1mula_ 10 d2o97b1 11 d1b8za_ 12 d1o17a1 13 d1z67a1 14 d1dula_ 15 d1brwa1 16 d1hq1a_ 17 d1qzxa2 18 d1nria_ 19 c1nriA_ 20 d1qb2a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1owfa_ 99.9 100 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 2 c2iifA_ 99.9 98 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 3 c3c4iA_ 99.9 37 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 4 d1p71a_ 99.9 33 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 5 d1owfb_ 99.9 32 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 6 c2np2B_ 99.9 33 PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex 7 d1exea_ 99.9 27 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 8 d1huua_ 99.8 41 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 9 d1mula_ 99.8 32 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 10 d2o97b1 99.7 28 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 11 d1b8za_ 99.6 37 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 12 d1o17a1 47.7 23 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 13 d1z67a1 47.3 26 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 14 d1dula_ 46.8 19 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 15 d1brwa1 46.2 13 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 16 d1hq1a_ 45.9 23 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 17 d1qzxa2 44.7 24 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 18 d1nria_ 44.3 18 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 19 c1nriA_ 44.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 20 d1qb2a_ 42.0 23 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 21 d1nh2d1 not modelled 36.7 13 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 22 c2yskA_ not modelled 34.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus 23 c1o17A_ not modelled 34.7 23 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 24 c2krcA_ not modelled 30.6 15 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 25 d1khda1 not modelled 30.5 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 26 d2tpta1 not modelled 29.8 13 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 27 d2ffha2 not modelled 29.2 23 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 28 d1ussa_ not modelled 26.7 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 29 d1vola2 not modelled 26.5 15 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 30 d2cp9a1 not modelled 26.4 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 31 c3mzyA_ not modelled 25.2 8 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 32 c1tr8A_ not modelled 24.9 18 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 33 d1aipc1 not modelled 23.2 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 34 d1uoua1 not modelled 22.5 22 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 35 d1nvpd1 not modelled 22.1 18 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 36 c1nvpD_ not modelled 21.8 20 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex 37 c3g2bA_ not modelled 20.7 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 38 c3cvjB_ not modelled 20.7 12 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 39 d1z6ra1 not modelled 20.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 40 d1xb2b1 not modelled 20.4 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 41 c1khdD_ not modelled 20.2 17 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 42 c3tsuA_ not modelled 19.8 30 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 43 c1zvvA_ not modelled 19.6 17 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 44 d2o4ta1 not modelled 19.0 18 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 45 c2v79B_ not modelled 18.6 13 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 46 d1i27a_ not modelled 17.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 47 c2vn2B_ not modelled 17.4 17 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 48 c1otpA_ not modelled 17.3 13 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 49 c3bwgA_ not modelled 16.8 28 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 50 d1q1va_ not modelled 14.9 8 Fold:Another 3-helical bundle Superfamily:DEK C-terminal domain Family:DEK C-terminal domain 51 c2kloA_ not modelled 14.3 24 PDB header:cell cycle Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: structure of the cdt1 c-terminal domain 52 d1l0oc_ not modelled 14.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 53 c1l0oC_ not modelled 14.3 29 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 54 c2jqeA_ not modelled 14.2 21 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 55 d1aisb2 not modelled 13.9 26 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 56 c1nh2D_ not modelled 13.7 15 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 57 c1vquB_ not modelled 13.7 24 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 58 c3edpB_ not modelled 13.5 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 59 c3a4cA_ not modelled 13.3 24 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 60 d1ee8a1 not modelled 12.6 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 61 c2v3cC_ not modelled 12.4 19 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 62 d1v8ga1 not modelled 12.2 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 63 d1tdza1 not modelled 12.0 18 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 64 d1efub3 not modelled 11.9 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 65 d1k82a1 not modelled 11.7 21 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 66 d1njra_ not modelled 11.3 4 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 67 d2elca1 not modelled 11.3 12 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 68 c1brwB_ not modelled 11.0 13 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 69 c2dsjA_ not modelled 10.6 3 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 70 c3dm5A_ not modelled 10.6 29 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 71 d1dpua_ not modelled 10.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 72 c1dpuA_ not modelled 10.5 21 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 73 d1g8ia_ not modelled 10.2 21 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 74 d1r2za1 not modelled 10.0 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 75 d1z05a1 not modelled 9.6 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 76 c2vfyA_ not modelled 9.4 15 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 77 d1x92a_ not modelled 9.3 13 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 78 d1k3xa1 not modelled 8.8 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 79 c3jx9B_ not modelled 8.4 19 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution 80 c1aipG_ not modelled 8.2 19 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 81 d1uxda_ not modelled 8.2 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 82 d1v92a_ not modelled 8.2 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 83 d1uxca_ not modelled 8.2 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 84 d1un2a_ not modelled 7.9 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 85 c3kfoA_ not modelled 7.7 20 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup133; PDBTitle: crystal structure of the c-terminal domain from the nuclear pore2 complex component nup133 from saccharomyces cerevisiae 86 d1pvga1 not modelled 7.6 7 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 87 c2j37W_ not modelled 7.6 29 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 88 c2yvaB_ not modelled 7.6 11 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 89 c2bpqB_ not modelled 7.6 15 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 90 c3thgA_ not modelled 7.6 19 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 91 d2bjca1 not modelled 7.5 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 92 d1mkma1 not modelled 7.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 93 d1ay7b_ not modelled 7.4 13 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 94 c2l8nA_ not modelled 7.4 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 95 c1rp3G_ not modelled 7.3 21 PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm 96 c1v8gB_ not modelled 7.2 12 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 97 d1lcda_ not modelled 7.1 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 98 d1qpza1 not modelled 6.8 5 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 99 c2lcvA_ not modelled 6.8 10 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0