Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	Y	I	G	L	P	Q	W	S	H	P	K	W	V	R	L	G	I	T	S	L	E	E	Y	A	R	H	F	N	C	V	E	G	N	T	T	L	Y	A	L	P	K	P	E	V	V	L	R	W	R	E	Q	T	T	D	D	F	R	F
Secondary structure
SS confidence
Disorder		?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		C	F	K	F	P	A	T	I	S	H	Q	A	A	L	R	H	C	D	D	L	V	T	E	F	L	T	R	M	S	P	L	A	P	R	I	G	Q	Y	W	L	Q	L	P	A	T	F	G	P	R	E	L	P	A	L	W	H	F	L	D	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	P	G	E	F	N	Y	G	V	E	V	R	H	P	Q	F	F	A	K	G	E	E	E	Q	T	L	N	R	G	L	H	Q	R	G	V	N	R	V	I	L	D	S	R	P	V	H	A	A	R	P	H	S	E	A	I	R	D	A	Q	R
Secondary structure
SS confidence
Disorder																																													?	?	?	?					?					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	K	P	K	V	P	V	H	A	V	L	T	A	T	N	P	L	I	R	F	I	G	S	D	D	M	T	Q	N	R	E	L	F	Q	V	W	L	Q	K	L	A	Q	W	H	Q	T	T	T	P	Y	L	F	L	H	T	P	D	I	A	Q
Secondary structure
SS confidence
Disorder																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Sequence		A	P	E	L	V	H	T	L	W	E	D	L	R	K	T	L	P	E	I	G	A	V	P	A	I	P	Q	Q	S	S	L	F
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vpq chain A Region: 1 - 254 Aligned: 231 Modelled: 238 Confidence: 100.0% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: TM1631-like Family: TM1631-like Phyre2 PDB 1vpy chain A Region: 2 - 254 Aligned: 228 Modelled: 230 Confidence: 100.0% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: TM1631-like Family: TM1631-like Phyre2 PDB 3lmz chain A Region: 2 - 159 Aligned: 141 Modelled: 155 Confidence: 93.2% Identity: 8% PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution Phyre2 PDB 3l23 chain A Region: 4 - 136 Aligned: 133 Modelled: 132 Confidence: 87.7% Identity: 10% PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution Phyre2 PDB 3cny chain A Region: 2 - 159 Aligned: 147 Modelled: 158 Confidence: 82.4% Identity: 14% PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution Phyre2 PDB 1yx1 chain A domain 1 Region: 1 - 258 Aligned: 243 Modelled: 258 Confidence: 73.6% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: KguE-like Phyre2 PDB 3dx5 chain A Region: 3 - 159 Aligned: 155 Modelled: 157 Confidence: 68.9% Identity: 8% PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis Phyre2 PDB 2x7v chain A Region: 1 - 159 Aligned: 155 Modelled: 159 Confidence: 59.6% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc Phyre2 PDB 2cx6 chain A domain 1 Region: 100 - 153 Aligned: 52 Modelled: 54 Confidence: 56.1% Identity: 17% Fold: Barstar-like Superfamily: Barstar-related Family: Barstar-related Phyre2 PDB 2hk1 chain D Region: 3 - 161 Aligned: 157 Modelled: 156 Confidence: 51.5% Identity: 14% PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose Phyre2 PDB 2ou4 chain C Region: 4 - 160 Aligned: 157 Modelled: 157 Confidence: 50.2% Identity: 10% PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii Phyre2 PDB 2img chain A Region: 128 - 253 Aligned: 106 Modelled: 106 Confidence: 45.0% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion Phyre2 PDB 3p6l chain A Region: 1 - 159 Aligned: 142 Modelled: 156 Confidence: 39.7% Identity: 8% PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution Phyre2 PDB 1edg chain A Region: 135 - 236 Aligned: 67 Modelled: 69 Confidence: 34.3% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1rh6 chain A Region: 38 - 53 Aligned: 16 Modelled: 16 Confidence: 28.6% Identity: 25% Fold: Putative DNA-binding domain Superfamily: Putative DNA-binding domain Family: Excisionase-like Phyre2 PDB 2zvr chain A Region: 2 - 154 Aligned: 148 Modelled: 153 Confidence: 26.3% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima Phyre2 PDB 1ay7 chain B Region: 100 - 133 Aligned: 32 Modelled: 34 Confidence: 24.9% Identity: 38% Fold: Barstar-like Superfamily: Barstar-related Family: Barstar-related Phyre2 PDB 2gs5 chain A domain 1 Region: 1 - 10 Aligned: 10 Modelled: 10 Confidence: 24.7% Identity: 20% Fold: VC0467-like Superfamily: VC0467-like Family: VC0467-like Phyre2 PDB 3obe chain B Region: 4 - 130 Aligned: 121 Modelled: 126 Confidence: 21.6% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution Phyre2 PDB 1yob chain A domain 1 Region: 101 - 221 Aligned: 102 Modelled: 105 Confidence: 21.4% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 1 d1vpqa_ 2 d1vpya_ 3 c3lmzA_ 4 c3l23A_ 5 c3cnyA_ 6 d1yx1a1 7 c3dx5A_ 8 c2x7vA_ 9 d2cx6a1 10 c2hk1D_ 11 c2ou4C_ 12 c2imgA_ 13 c3p6lA_ 14 d1edga_ 15 d1rh6a_ 16 c2zvrA_ 17 d1ay7b_ 18 d2gs5a1 19 c3obeB_ 20 d1yoba1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vpqa_ 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:TM1631-like Family:TM1631-like 2 d1vpya_ 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:TM1631-like Family:TM1631-like 3 c3lmzA_ 93.2 8 PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution 4 c3l23A_ 87.7 10 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 5 c3cnyA_ 82.4 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 6 d1yx1a1 73.6 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:KguE-like 7 c3dx5A_ 68.9 8 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 8 c2x7vA_ 59.6 13 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc 9 d2cx6a1 56.1 17 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 10 c2hk1D_ 51.5 14 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 11 c2ou4C_ 50.2 10 PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii 12 c2imgA_ 45.0 11 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion 13 c3p6lA_ 39.7 8 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 14 d1edga_ 34.3 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 15 d1rh6a_ 28.6 25 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 16 c2zvrA_ 26.3 15 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 17 d1ay7b_ 24.9 38 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 18 d2gs5a1 24.7 20 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 19 c3obeB_ 21.6 12 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution 20 d1yoba1 21.4 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 21 d1tpna_ not modelled 20.9 19 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 22 c3ngfA_ not modelled 19.1 14 PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis 23 d1i60a_ not modelled 18.7 10 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 24 d2do8a1 not modelled 18.5 20 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 25 d1wjwa_ not modelled 17.3 17 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 26 d1jpma1 not modelled 17.2 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 27 d2gzoa1 not modelled 17.2 30 Fold:VC0467-like Superfamily:VC0467-like Family:VC0467-like 28 c2l82A_ not modelled 14.9 19 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 29 c2dn5A_ not modelled 14.8 28 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna 30 c2pebB_ not modelled 14.3 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution 31 c2xrfA_ not modelled 14.1 38 PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2 32 c3bjeA_ not modelled 13.8 25 PDB header:transferase Chain: A: PDB Molecule:nucleoside phosphorylase, putative; PDBTitle: crystal structure of trypanosoma brucei nucleoside phosphorylase shows2 uridine phosphorylase activity 33 c2d99A_ not modelled 12.6 19 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-048, a gtf2i domain in human2 cdna 34 c3ceuA_ not modelled 12.5 13 PDB header:transferase Chain: A: PDB Molecule:thiamine phosphate pyrophosphorylase; PDBTitle: crystal structure of thiamine phosphate pyrophosphorylase2 (bt_0647) from bacteroides thetaiotaomicron. northeast3 structural genomics consortium target btr268 35 c2qz5A_ not modelled 12.5 19 PDB header:signaling protein, lipid binding protein Chain: A: PDB Molecule:axin interactor, dorsalization associated PDBTitle: crystal structure of the c-terminal domain of aida 36 d1nuia1 not modelled 12.1 10 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 37 c2e3lA_ not modelled 11.5 22 PDB header:transcription Chain: A: PDB Molecule:transcription factor gtf2ird2 beta; PDBTitle: solution structure of rsgi ruh-068, a gtf2i domain in human2 cdna 38 c2dzrA_ not modelled 11.0 22 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna 39 c2ejeA_ not modelled 10.8 9 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna 40 d1u83a_ not modelled 10.7 8 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 41 c1u83A_ not modelled 10.7 8 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 42 c3eufC_ not modelled 10.1 38 PDB header:transferase Chain: C: PDB Molecule:uridine phosphorylase 1; PDBTitle: crystal structure of bau-bound human uridine phosphorylase 1 43 c3hefB_ not modelled 9.9 29 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 44 c3sjnB_ not modelled 9.9 10 PDB header:lyase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of enolase spea_3858 (target efi-500646) from2 shewanella pealeana with magnesium bound 45 d1m3ga_ not modelled 9.9 14 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 46 c3b73A_ not modelled 9.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phih1 repressor-like protein; PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui 47 d1nwba_ not modelled 9.5 14 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 48 d2pb9a1 not modelled 9.2 18 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 49 c3iz3D_ not modelled 9.2 17 PDB header:virus Chain: D: PDB Molecule:viral structural protein 5; PDBTitle: cryoem structure of cytoplasmic polyhedrosis virus 50 d1kyqa2 not modelled 9.0 9 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 51 c3eezA_ not modelled 8.9 9 PDB header:isomerase Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi 52 c3izxE_ not modelled 8.8 17 PDB header:virus Chain: E: PDB Molecule:viral structural protein 5; PDBTitle: 3.1 angstrom cryoem structure of cytoplasmic polyhedrosis virus 53 d1q60a_ not modelled 8.6 21 Fold:GTF2I-like repeat Superfamily:GTF2I-like repeat Family:GTF2I-like repeat 54 c2yvaB_ not modelled 8.6 10 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 55 c2ed2A_ not modelled 8.5 13 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna 56 c2pfcA_ not modelled 8.3 63 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv0098/mt0107; PDBTitle: structure of mycobacterium tuberculosis rv0098 57 c2qsxB_ not modelled 8.1 3 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus 58 c2b5dX_ not modelled 7.8 24 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima 59 c2qgyA_ not modelled 7.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:enolase from the environmental genome shotgun PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea 60 d1autl1 not modelled 7.5 27 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 61 d2p8ia1 not modelled 7.4 11 Fold:Ferredoxin-like Superfamily:DOPA-like Family:DOPA dioxygenase-like 62 c2j37W_ not modelled 7.3 8 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 63 c3tdqB_ not modelled 7.3 43 PDB header:cell adhesion Chain: B: PDB Molecule:pily2 protein; PDBTitle: crystal structure of a fimbrial biogenesis protein pily22 (pily2_pa4555) from pseudomonas aeruginosa pao1 at 2.10 a resolution 64 c2iy3A_ not modelled 7.2 14 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 65 d2mnra1 not modelled 7.0 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 66 c2jm3A_ not modelled 6.9 29 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: solution structure of the thap domain from c. elegans c-2 terminal binding protein (ctbp) 67 c2htdB_ not modelled 6.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576 PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution 68 c3emuA_ not modelled 6.8 9 PDB header:hydrolase Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica 69 d1dgsa3 not modelled 6.7 12 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 70 d2q02a1 not modelled 6.5 11 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 71 d1qwga_ not modelled 6.4 12 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 72 c3icgD_ not modelled 6.3 13 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 73 c2dn4A_ not modelled 6.3 21 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna 74 d1qtwa_ not modelled 6.3 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 75 c3iraA_ not modelled 6.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 76 d1iuka_ not modelled 6.1 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 77 d2choa2 not modelled 5.9 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 78 c2k4zA_ not modelled 5.7 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 79 c2dzqA_ not modelled 5.7 18 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna 80 d1h4pa_ not modelled 5.5 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 81 c2esbA_ not modelled 5.5 14 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 18; PDBTitle: crystal structure of human dusp18 82 c2duwA_ not modelled 5.3 13 PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae 83 d1h41a1 not modelled 5.2 26 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 84 c3bb5B_ not modelled 5.2 19 PDB header:unknown function Chain: B: PDB Molecule:stress responsive alpha-beta protein; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0