Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	K	L	Q	V	V	T	L	L	G	S	L	R	K	G	S	F	N	G	M	V	A	R	T	L	P	K	I	A	P	A	S	M	E	V	N	A	L	P	S	I	A	D	I	P	L	Y	D	A	D	V	Q	Q	E	E	G	F	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	V	E	A	L	A	E	Q	I	R	Q	A	D	G	V	V	I	V	T	P	E	Y	N	Y	S	V	P	G	G	L	K	N	A	I	D	W	L	S	R	L	P	D	Q	P	L	A	G	K	P	V	L	I	Q	T	S	S	M	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	G	G	A	R	C	Q	Y	H	L	R	Q	I	L	V	F	L	D	A	M	V	M	N	K	P	E	F	M	G	G	V	I	Q	N	K	V	D	P	Q	T	G	E	V	I	D	Q	G	T	L	D	H	L	T	G	Q	L	T	A	F	G
Secondary structure
SS confidence
Disorder																																			?				?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		E	F	I	Q	R	V	K	I
Secondary structure
SS confidence
Disorder							?		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2q62 chain A Region: 1 - 187 Aligned: 180 Modelled: 187 Confidence: 100.0% Identity: 19% PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti Phyre2 PDB 2fzv chain C Region: 1 - 187 Aligned: 179 Modelled: 187 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri Phyre2 PDB 2fzv chain A domain 1 Region: 2 - 187 Aligned: 180 Modelled: 186 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 1rtt chain A Region: 5 - 179 Aligned: 172 Modelled: 175 Confidence: 100.0% Identity: 47% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 1nni chain 1 Region: 6 - 185 Aligned: 168 Modelled: 180 Confidence: 100.0% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 3fvw chain A Region: 6 - 184 Aligned: 170 Modelled: 174 Confidence: 100.0% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. Phyre2 PDB 2vzh chain A Region: 6 - 185 Aligned: 173 Modelled: 177 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex Phyre2 PDB 1t0i chain A Region: 5 - 176 Aligned: 166 Modelled: 172 Confidence: 100.0% Identity: 24% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 3k1y chain E Region: 6 - 183 Aligned: 168 Modelled: 178 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d Phyre2 PDB 1sqs chain A Region: 6 - 187 Aligned: 168 Modelled: 169 Confidence: 100.0% Identity: 14% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein SP1951 Phyre2 PDB 1ydg chain A Region: 3 - 187 Aligned: 183 Modelled: 185 Confidence: 100.0% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 3lcm chain B Region: 5 - 186 Aligned: 167 Modelled: 168 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 Phyre2 PDB 2qwx chain A domain 1 Region: 6 - 188 Aligned: 173 Modelled: 173 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1t5b chain A Region: 5 - 177 Aligned: 169 Modelled: 173 Confidence: 100.0% Identity: 20% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2zki chain H Region: 4 - 187 Aligned: 181 Modelled: 184 Confidence: 100.0% Identity: 19% PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Phyre2 PDB 1d4a chain A Region: 1 - 179 Aligned: 167 Modelled: 167 Confidence: 99.9% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1dxq chain A Region: 2 - 188 Aligned: 176 Modelled: 177 Confidence: 99.9% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2hpv chain A Region: 6 - 179 Aligned: 170 Modelled: 174 Confidence: 99.9% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis Phyre2 PDB 2z98 chain A domain 1 Region: 6 - 184 Aligned: 168 Modelled: 168 Confidence: 99.9% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3p0r chain A Region: 6 - 185 Aligned: 169 Modelled: 168 Confidence: 99.9% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne Phyre2 1 c2q62A_ 2 c2fzvC_ 3 d2fzva1 4 d1rtta_ 5 d1nni1_ 6 c3fvwA_ 7 c2vzhA_ 8 d1t0ia_ 9 c3k1yE_ 10 d1sqsa_ 11 d1ydga_ 12 c3lcmB_ 13 d2qwxa1 14 d1t5ba_ 15 c2zkiH_ 16 d1d4aa_ 17 d1dxqa_ 18 c2hpvA_ 19 d2z98a1 20 c3p0rA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2q62A_ 100.0 19 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 2 c2fzvC_ 100.0 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 3 d2fzva1 100.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 4 d1rtta_ 100.0 47 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 5 d1nni1_ 100.0 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 6 c3fvwA_ 100.0 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 7 c2vzhA_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 8 d1t0ia_ 100.0 24 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 9 c3k1yE_ 100.0 18 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 10 d1sqsa_ 100.0 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 11 d1ydga_ 100.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 12 c3lcmB_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 13 d2qwxa1 100.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 14 d1t5ba_ 100.0 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 15 c2zkiH_ 100.0 19 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 16 d1d4aa_ 99.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 17 d1dxqa_ 99.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 18 c2hpvA_ 99.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 19 d2z98a1 99.9 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 20 c3p0rA_ 99.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 21 c3b6iB_ not modelled 99.9 12 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 22 d1qrda_ not modelled 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 23 c2v9cA_ not modelled 99.9 25 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 24 d2a5la1 not modelled 99.9 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 25 d1rlia_ not modelled 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 26 c3f2vA_ not modelled 99.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 27 c3rpeA_ not modelled 99.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 28 c3d7nA_ not modelled 99.9 16 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 29 d2arka1 not modelled 99.8 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 30 c2amjD_ not modelled 99.8 14 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 31 c3eywA_ not modelled 99.8 18 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 32 c3ha2B_ not modelled 99.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 33 d1e5da1 not modelled 99.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 34 d1ycga1 not modelled 99.7 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 35 c1ychD_ not modelled 99.7 17 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 36 c2ohiB_ not modelled 99.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 37 d1vmea1 not modelled 99.6 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 38 c2q9uB_ not modelled 99.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 39 c3klbA_ not modelled 99.6 15 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 40 c3fniA_ not modelled 99.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 41 c1e5dA_ not modelled 99.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 42 c3edoA_ not modelled 99.5 13 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 43 c3hlyA_ not modelled 99.4 15 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 44 c1vmeB_ not modelled 99.4 15 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 45 d2fz5a1 not modelled 99.2 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 46 c3f6sI_ not modelled 99.2 15 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 47 d5nula_ not modelled 99.1 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 48 d1oboa_ not modelled 99.0 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 49 d1czna_ not modelled 99.0 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 50 d1ag9a_ not modelled 99.0 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 51 d2fcra_ not modelled 98.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 52 d1yoba1 not modelled 98.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 53 d1tlla2 not modelled 98.9 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 54 d1fuea_ not modelled 98.8 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 55 d1ykga1 not modelled 98.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 56 c2wc1A_ not modelled 98.8 18 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 57 d1bvyf_ not modelled 98.7 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 58 c1bvyF_ not modelled 98.7 19 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 59 d1f4pa_ not modelled 98.7 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 60 d1b1ca_ not modelled 98.7 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 61 c2hnbA_ not modelled 98.6 12 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 62 c3hr4C_ not modelled 98.5 13 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 63 d1ja1a2 not modelled 98.3 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 64 c1tllA_ not modelled 98.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 65 c2bpoA_ not modelled 97.6 14 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 66 c1j9zB_ not modelled 97.3 18 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 67 c2x2oA_ not modelled 95.9 18 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 68 d1rlja_ not modelled 95.3 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 69 c3orsD_ not modelled 94.3 11 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 70 c3lp6D_ not modelled 93.3 10 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 71 c3n39D_ not modelled 93.0 15 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 72 c3lwzC_ not modelled 91.8 13 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 73 c2ys6A_ not modelled 91.7 19 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase; PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus 74 d1qcza_ not modelled 91.3 16 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 75 c3ic5A_ not modelled 91.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative saccharopine dehydrogenase; PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi. 76 c2kyrA_ not modelled 91.1 15 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 77 c3qvjB_ not modelled 88.4 12 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 78 c3nbmA_ not modelled 87.1 16 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 79 d2a9va1 not modelled 87.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 80 d1u7za_ not modelled 86.8 12 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 81 d1xmpa_ not modelled 86.0 15 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 82 c3rggD_ not modelled 85.6 12 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 83 c1tvmA_ not modelled 84.6 13 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 84 d2r4qa1 not modelled 84.5 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 85 d1o4va_ not modelled 83.9 10 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 86 c3k5iB_ not modelled 81.9 18 PDB header:lyase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole carboxylase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthase from2 aspergillus clavatus in complex with adp and 5-3 aminoimadazole ribonucleotide 87 c1rcuB_ not modelled 81.8 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 88 d1rcua_ not modelled 81.8 17 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 89 c3se7A_ not modelled 81.8 9 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 90 c3c4vB_ not modelled 80.9 14 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 91 d2r48a1 not modelled 80.2 19 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 92 d1iowa1 not modelled 80.0 7 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 93 c3lwbA_ not modelled 78.6 16 PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis 94 d1mkza_ not modelled 78.1 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 95 c2khzB_ not modelled 78.1 21 PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl 96 c2l2qA_ not modelled 76.5 20 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 97 c3e5nA_ not modelled 75.5 16 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 98 c3oy2A_ not modelled 75.4 12 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 99 c2fw9A_ not modelled 75.3 12 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 100 c2z2vA_ not modelled 75.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 101 c3c7cB_ not modelled 74.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:octopine dehydrogenase; PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine) 102 d1u11a_ not modelled 74.3 12 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 103 c3tqtB_ not modelled 73.6 15 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 104 c3l6dB_ not modelled 73.5 9 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440 105 c3lp8A_ not modelled 71.6 13 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase; PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis 106 c2gk4A_ not modelled 71.5 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: the crystal structure of the dna/pantothenate metabolism flavoprotein2 from streptococcus pneumoniae 107 c3kklA_ not modelled 71.0 11 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 108 c3ot5D_ not modelled 70.9 14 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 109 d1txga2 not modelled 70.6 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 110 c1e4eB_ not modelled 69.2 12 PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase 111 d1qzua_ not modelled 69.0 21 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 112 c1e5lA_ not modelled 68.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea 113 c3i12A_ not modelled 68.1 12 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 114 c2pvpB_ not modelled 68.0 9 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori 115 c3ktdC_ not modelled 67.6 10 PDB header:oxidoreductase Chain: C: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution 116 d1sc6a2 not modelled 66.8 21 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 117 d1gtza_ not modelled 66.3 19 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 118 d2hy5a1 not modelled 66.1 8 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 119 c1jr2A_ not modelled 65.4 9 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 120 d1jr2a_ not modelled 65.4 9 Fold:HemD-like Superfamily:HemD-like Family:HemD-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0