Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	P	P	I	N	F	L	P	W	R	Q	Q	R	R	T	A	F	L	R	F	W	L	L	M	F	V	A	P	L	L	L	A	V	G	I	T	L	I	L	R	L	T	G	S	A	E	A	R	I	D	A	V	L	L	Q	A	E	Q	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	A	R	S	L	Q	I	T	K	P	R	L	L	E	Q	Q	Q	L	R	E	Q	R	S	Q	R	Q	R	Q	R	Q	F	T	R	D	W	Q	S	A	L	E	A	L	A	A	L	L	P	E	H	A	W	L	T	T	I	S	W	Q	Q	G
Secondary structure
SS confidence
Disorder																																?		?	?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Sequence		T	L	E	I	K	G	L	T	T	S	I	T	A	L	N	A	L	E	T	S	L	R	Q	D	A	S	F	H	L	N	Q	R	G	A	T	Q	Q	D	A	Q	G	R	W	Q	F	E	Y	Q	L	T	R	K	V	S	D	E	H	V	L
Secondary structure
SS confidence
Disorder																								?		?	?	?	?	?	?	?	?	?	?			?	?	?	?	?											?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rjz chain A Region: 54 - 171 Aligned: 117 Modelled: 118 Confidence: 96.9% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa Phyre2 PDB 2w7v chain B Region: 96 - 172 Aligned: 72 Modelled: 74 Confidence: 61.4% Identity: 17% PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus Phyre2 PDB 3mc8 chain A Region: 126 - 177 Aligned: 52 Modelled: 52 Confidence: 49.0% Identity: 6% PDB header:membrane protein Chain: A: PDB Molecule:alr2269 protein; PDBTitle: potra1-3 of the periplasmic domain of omp85 from anabaena Phyre2 PDB 2x8x chain X Region: 126 - 170 Aligned: 45 Modelled: 45 Confidence: 27.2% Identity: 13% PDB header:chaperone Chain: X: PDB Molecule:tlr1789 protein; PDBTitle: structure of the n-terminal domain of omp85 from the2 thermophilic cyanobacterium thermosynechococcus elongatus Phyre2 PDB 2kgs chain A Region: 109 - 142 Aligned: 34 Modelled: 34 Confidence: 26.3% Identity: 29% PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: solution structure of the amino-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 2j8p chain A Region: 5 - 23 Aligned: 19 Modelled: 19 Confidence: 23.3% Identity: 26% PDB header:nuclear protein Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit; PDBTitle: nmr structure of c-terminal domain of human cstf-64 Phyre2 PDB 1w2i chain A Region: 93 - 167 Aligned: 72 Modelled: 75 Confidence: 23.0% Identity: 14% Fold: Ferredoxin-like Superfamily: Acylphosphatase/BLUF domain-like Family: Acylphosphatase-like Phyre2 PDB 1uv7 chain A Region: 109 - 175 Aligned: 62 Modelled: 67 Confidence: 22.8% Identity: 10% PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae Phyre2 PDB 1uv7 chain A Region: 109 - 175 Aligned: 62 Modelled: 67 Confidence: 22.8% Identity: 10% Fold: RRF/tRNA synthetase additional domain-like Superfamily: General secretion pathway protein M, EpsM Family: General secretion pathway protein M, EpsM Phyre2 PDB 2kxy chain A Region: 106 - 126 Aligned: 21 Modelled: 21 Confidence: 19.2% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of sur18c from streptococcus thermophilus.2 northeast structural genomics consortium target sur18c Phyre2 PDB 3og5 chain A Region: 126 - 170 Aligned: 45 Modelled: 45 Confidence: 17.3% Identity: 9% PDB header:protein binding Chain: A: PDB Molecule:outer membrane protein assembly complex, yaet protein; PDBTitle: crystal structure of bama potra45 tandem Phyre2 PDB 3hd7 chain A Region: 11 - 43 Aligned: 33 Modelled: 33 Confidence: 16.0% Identity: 12% PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Phyre2 PDB 3br8 chain A Region: 93 - 169 Aligned: 74 Modelled: 77 Confidence: 14.7% Identity: 8% PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: crystal structure of acylphosphatase from bacillus subtilis Phyre2 PDB 3ibw chain A Region: 98 - 151 Aligned: 54 Modelled: 53 Confidence: 14.1% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 3qq5 chain A Region: 96 - 116 Aligned: 21 Modelled: 21 Confidence: 13.4% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf Phyre2 PDB 3k2k chain A Region: 129 - 179 Aligned: 48 Modelled: 51 Confidence: 13.1% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:putative carboxypeptidase; PDBTitle: crystal structure of putative carboxypeptidase (yp_103406.1) from2 burkholderia mallei atcc 23344 at 2.49 a resolution Phyre2 PDB 1ulr chain A Region: 93 - 167 Aligned: 72 Modelled: 75 Confidence: 13.0% Identity: 15% Fold: Ferredoxin-like Superfamily: Acylphosphatase/BLUF domain-like Family: Acylphosphatase-like Phyre2 PDB 1gnw chain A domain 1 Region: 130 - 151 Aligned: 22 Modelled: 22 Confidence: 11.8% Identity: 9% Fold: GST C-terminal domain-like Superfamily: GST C-terminal domain-like Family: Glutathione S-transferase (GST), C-terminal domain Phyre2 PDB 2end chain A Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 11.0% Identity: 7% Fold: T4 endonuclease V Superfamily: T4 endonuclease V Family: T4 endonuclease V Phyre2 PDB 2hsm chain A Region: 129 - 150 Aligned: 22 Modelled: 22 Confidence: 10.9% Identity: 18% PDB header:ligase/rna binding protein Chain: A: PDB Molecule:glutamyl-trna synthetase, cytoplasmic; PDBTitle: structural basis of yeast aminoacyl-trna synthetase complex2 formation revealed by crystal structures of two binary sub-3 complexes Phyre2 1 c2rjzA_ 2 c2w7vB_ 3 c3mc8A_ 4 c2x8xX_ 5 c2kgsA_ 6 c2j8pA_ 7 d1w2ia_ 8 c1uv7A_ 9 d1uv7a_ 10 c2kxyA_ 11 c3og5A_ 12 c3hd7A_ 13 c3br8A_ 14 c3ibwA_ 15 c3qq5A_ 16 c3k2kA_ 17 d1ulra_ 18 d1gnwa1 19 d2enda_ 20 c2hsmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rjzA_ 96.9 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 2 c2w7vB_ 61.4 17 PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus 3 c3mc8A_ 49.0 6 PDB header:membrane protein Chain: A: PDB Molecule:alr2269 protein; PDBTitle: potra1-3 of the periplasmic domain of omp85 from anabaena 4 c2x8xX_ 27.2 13 PDB header:chaperone Chain: X: PDB Molecule:tlr1789 protein; PDBTitle: structure of the n-terminal domain of omp85 from the2 thermophilic cyanobacterium thermosynechococcus elongatus 5 c2kgsA_ 26.3 29 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: solution structure of the amino-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 6 c2j8pA_ 23.3 26 PDB header:nuclear protein Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit; PDBTitle: nmr structure of c-terminal domain of human cstf-64 7 d1w2ia_ 23.0 14 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 8 c1uv7A_ 22.8 10 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 9 d1uv7a_ 22.8 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 10 c2kxyA_ 19.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of sur18c from streptococcus thermophilus.2 northeast structural genomics consortium target sur18c 11 c3og5A_ 17.3 9 PDB header:protein binding Chain: A: PDB Molecule:outer membrane protein assembly complex, yaet protein; PDBTitle: crystal structure of bama potra45 tandem 12 c3hd7A_ 16.0 12 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 13 c3br8A_ 14.7 8 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: crystal structure of acylphosphatase from bacillus subtilis 14 c3ibwA_ 14.1 13 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 15 c3qq5A_ 13.4 33 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 16 c3k2kA_ 13.1 17 PDB header:hydrolase Chain: A: PDB Molecule:putative carboxypeptidase; PDBTitle: crystal structure of putative carboxypeptidase (yp_103406.1) from2 burkholderia mallei atcc 23344 at 2.49 a resolution 17 d1ulra_ 13.0 15 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 18 d1gnwa1 11.8 9 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 19 d2enda_ 11.0 7 Fold:T4 endonuclease V Superfamily:T4 endonuclease V Family:T4 endonuclease V 20 c2hsmA_ 10.9 18 PDB header:ligase/rna binding protein Chain: A: PDB Molecule:glutamyl-trna synthetase, cytoplasmic; PDBTitle: structural basis of yeast aminoacyl-trna synthetase complex2 formation revealed by crystal structures of two binary sub-3 complexes 21 d1pmta1 not modelled 10.8 13 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 22 d2awna1 not modelled 10.4 63 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 23 c1qcrD_ not modelled 10.1 11 PDB header: PDB COMPND: 24 c2x3dC_ not modelled 9.6 11 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 25 c3lygA_ not modelled 9.5 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_270605.1) from colwellia psychrerythraea 34h at 1.61 a resolution 26 d3bzfa1 not modelled 8.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 27 d1vm0a_ not modelled 8.8 12 Fold:IF3-like Superfamily:AlbA-like Family:Hypothetical protein At2g34160 28 d1dx4a_ not modelled 8.2 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 29 c1f8uA_ not modelled 8.0 11 PDB header:hydrolase/toxin Chain: A: PDB Molecule:acetylcholinesterase; PDBTitle: crystal structure of mutant e202q of human acetylcholinesterase2 complexed with green mamba venom peptide fasciculin-ii 30 d1f8ua_ not modelled 8.0 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 31 c1p84D_ not modelled 7.9 16 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 32 d2ha2a1 not modelled 7.6 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 33 d1rl2a1 not modelled 7.5 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 34 c3ipfA_ not modelled 7.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 35 d1qo3a1 not modelled 7.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 36 c2l5gB_ not modelled 7.4 13 PDB header:transcription regulator Chain: B: PDB Molecule:putative uncharacterized protein ncor2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 37 d1ea5a_ not modelled 7.3 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 38 d2cyya2 not modelled 7.3 14 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 39 c2akrA_ not modelled 7.3 19 PDB header:immune system Chain: A: PDB Molecule:t-cell surface glycoprotein cd1d1; PDBTitle: structural basis of sulfatide presentation by mouse cd1d 40 d1onqa1 not modelled 7.2 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 41 c2l26A_ not modelled 7.1 29 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 42 c2jsxA_ not modelled 6.9 17 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 43 c1xz0A_ not modelled 6.8 19 PDB header:immune system Chain: A: PDB Molecule:t-cell surface glycoprotein cd1a; PDBTitle: crystal structure of cd1a in complex with a synthetic mycobactin2 lipopeptide 44 d1f6ga_ not modelled 6.8 7 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 45 c3af5A_ not modelled 6.7 17 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii 46 c1cpbA_ not modelled 6.6 13 PDB header:hydrolase (c-terminal peptidase) Chain: A: PDB Molecule:carboxypeptidase b; PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution 47 d2raqa1 not modelled 6.5 15 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 48 d1n2aa1 not modelled 6.5 5 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 49 c1kdxB_ not modelled 6.4 28 PDB header:transcription regulation complex Chain: B: PDB Molecule:creb; PDBTitle: kix domain of mouse cbp (creb binding protein) in complex2 with phosphorylated kinase inducible domain (pkid) of rat3 creb (cyclic amp response element binding protein), nmr 174 structures 50 d1j5ya2 not modelled 6.3 8 Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain 51 d2cqla1 not modelled 6.1 39 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 52 d2axtj1 not modelled 6.1 18 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 53 c2uvaI_ not modelled 6.1 22 PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 54 d1k4ya_ not modelled 6.0 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 55 c3l2nA_ not modelled 6.0 13 PDB header:hydrolase Chain: A: PDB Molecule:peptidase m14, carboxypeptidase a; PDBTitle: crystal structure of putative carboxypeptidase a (yp_562911.1) from2 shewanella denitrificans os-217 at 2.39 a resolution 56 d3bpda1 not modelled 6.0 11 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 57 c1qysA_ not modelled 5.8 15 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 58 d1p0ia_ not modelled 5.7 8 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 59 c2e0gA_ not modelled 5.7 32 PDB header:replication Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: dnaa n-terminal domain 60 c2pm8A_ not modelled 5.6 8 PDB header:hydrolase Chain: A: PDB Molecule:cholinesterase; PDBTitle: crystal structure of recombinant full length human2 butyrylcholinesterase 61 c1gzpA_ not modelled 5.6 15 PDB header:glycoprotein Chain: A: PDB Molecule:t-cell surface glycoprotein cd1b; PDBTitle: cd1b in complex with gm2 ganglioside 62 c2qczA_ not modelled 5.5 10 PDB header:membrane protein, protein transport Chain: A: PDB Molecule:outer membrane protein assembly factor yaet; PDBTitle: structure of n-terminal domain of e. coli yaet 63 d1rl6a1 not modelled 5.5 33 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 64 c2uz8A_ not modelled 5.5 0 PDB header:rna-binding protein Chain: A: PDB Molecule:eukaryotic translation elongation factor 1 PDBTitle: the crystal structure of p18, human translation elongation2 factor 1 epsilon 1 65 c1cd1C_ not modelled 5.5 16 PDB header:cd1 Chain: C: PDB Molecule:cd1; PDBTitle: cd1(mouse) antigen presenting molecule 66 c2xr1B_ not modelled 5.4 14 PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei 67 d1qe3a_ not modelled 5.4 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 68 c1gnwA_ not modelled 5.4 9 PDB header:transferase Chain: A: PDB Molecule:glutathione s-transferase; PDBTitle: structure of glutathione s-transferase 69 d2vjva1 not modelled 5.4 3 Fold:Ferredoxin-like Superfamily:Transposase IS200-like Family:Transposase IS200-like 70 c2vhgB_ not modelled 5.3 3 PDB header:dna-binding protein Chain: B: PDB Molecule:transposase orfa; PDBTitle: crystal structure of the ishp608 transposase in complex2 with right end 31-mer dna 71 d2zjre2 not modelled 5.3 28 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 72 c1t7wA_ not modelled 5.3 14 PDB header:lipid binding protein Chain: A: PDB Molecule:zinc-alpha-2-glycoprotein; PDBTitle: zn-alpha-2-glycoprotein; cho-zag peg 400 73 c2kncA_ not modelled 5.2 17 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 74 c2ogsA_ not modelled 5.2 11 PDB header:hydrolase Chain: A: PDB Molecule:thermostable carboxylesterase est50; PDBTitle: crystal structure of the geobacillus stearothermophilus2 carboxylesterase est55 at ph 6.2 75 c2gv1A_ not modelled 5.2 9 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli 76 c3efcA_ not modelled 5.1 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein assembly factor yaet; PDBTitle: crystal structure of yaet periplasmic domain 77 c2zxxA_ not modelled 5.1 13 PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex 78 c4a1eE_ not modelled 5.1 11 PDB header:ribosome Chain: E: PDB Molecule:60s ribosomal protein l9; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 79 d1f6wa_ not modelled 5.0 5 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0