Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	I	K	L	I	V	G	L	A	N	P	G	A	E	Y	A	A	T	R	H	N	A	G	A	W	F	V	D	L	L	A	E	R	L	R	A	P	L	R	E	E	A	K	F	F	G	Y	T	S	R	V	T	L	G	G	E	D	V	R
Secondary structure
SS confidence
Disorder		?	?																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	V	P	T	T	F	M	N	L	S	G	K	A	V	A	A	M	A	S	F	F	R	I	N	P	D	E	I	L	V	A	H	D	E	L	D	L	P	P	G	V	A	K	F	K	L	G	G	G	H	G	G	H	N	G	L	K	D	I
Secondary structure
SS confidence
Disorder																																																	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	S	K	L	G	N	N	P	N	F	H	R	L	R	I	G	I	G	H	P	G	D	K	N	K	V	V	G	F	V	L	G	K	P	P	V	S	E	Q	K	L	I	D	E	A	I	D	E	A	A	R	C	T	E	M	W	F	T	D	G
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.
Sequence		L	T	K	A	T	N	R	L	H	A	F	K	A	Q
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pth chain A Region: 2 - 194 Aligned: 193 Modelled: 193 Confidence: 100.0% Identity: 100% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 3nea chain A Region: 2 - 188 Aligned: 186 Modelled: 187 Confidence: 100.0% Identity: 44% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis Phyre2 PDB 3v2i chain A Region: 3 - 188 Aligned: 185 Modelled: 186 Confidence: 100.0% Identity: 56% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis Phyre2 PDB 2z2j chain A Region: 4 - 180 Aligned: 176 Modelled: 177 Confidence: 100.0% Identity: 39% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis Phyre2 PDB 1ryb chain A Region: 4 - 192 Aligned: 183 Modelled: 189 Confidence: 100.0% Identity: 33% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 1cfz chain A Region: 3 - 38 Aligned: 32 Modelled: 36 Confidence: 83.8% Identity: 28% Fold: Phosphorylase/hydrolase-like Superfamily: HybD-like Family: Hydrogenase maturating endopeptidase HybD Phyre2 PDB 2e85 chain B Region: 2 - 35 Aligned: 30 Modelled: 30 Confidence: 76.7% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:hydrogenase 3 maturation protease; PDBTitle: crystal structure of the hydrogenase 3 maturation protease Phyre2 PDB 1c8b chain A Region: 5 - 31 Aligned: 23 Modelled: 27 Confidence: 50.1% Identity: 43% Fold: Phosphorylase/hydrolase-like Superfamily: HybD-like Family: Germination protease Phyre2 PDB 2jva chain A Region: 89 - 115 Aligned: 27 Modelled: 27 Confidence: 39.2% Identity: 30% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 Phyre2 PDB 2ea9 chain A domain 1 Region: 152 - 180 Aligned: 29 Modelled: 29 Confidence: 36.7% Identity: 24% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2inw chain A domain 1 Region: 152 - 180 Aligned: 29 Modelled: 29 Confidence: 34.8% Identity: 21% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 3tgn chain A Region: 145 - 173 Aligned: 29 Modelled: 29 Confidence: 33.9% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:adc operon repressor adcr; PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state Phyre2 PDB 2h28 chain A domain 1 Region: 152 - 180 Aligned: 29 Modelled: 29 Confidence: 33.0% Identity: 21% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2jy9 chain A Region: 89 - 115 Aligned: 27 Modelled: 27 Confidence: 32.4% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 Phyre2 PDB 3pu6 chain A Region: 3 - 34 Aligned: 28 Modelled: 32 Confidence: 31.8% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes Phyre2 PDB 3mpo chain D Region: 72 - 98 Aligned: 27 Modelled: 26 Confidence: 23.3% Identity: 11% PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis Phyre2 PDB 3gyg chain A Region: 72 - 95 Aligned: 24 Modelled: 23 Confidence: 21.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis Phyre2 PDB 1am7 chain A Region: 151 - 193 Aligned: 43 Modelled: 43 Confidence: 20.5% Identity: 12% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Lambda lysozyme Phyre2 PDB 3ipp chain A Region: 63 - 95 Aligned: 33 Modelled: 33 Confidence: 20.4% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje; PDBTitle: crystal structure of sulfur-free ynje Phyre2 PDB 3s2w chain B Region: 145 - 176 Aligned: 32 Modelled: 32 Confidence: 17.0% Identity: 3% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1 Phyre2 1 d2ptha_ 2 c3neaA_ 3 c3v2iA_ 4 c2z2jA_ 5 d1ryba_ 6 d1cfza_ 7 c2e85B_ 8 d1c8ba_ 9 c2jvaA_ 10 d2ea9a1 11 d2inwa1 12 c3tgnA_ 13 d2h28a1 14 c2jy9A_ 15 c3pu6A_ 16 c3mpoD_ 17 c3gygA_ 18 d1am7a_ 19 c3ippA_ 20 c3s2wB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ptha_ 100.0 100 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 2 c3neaA_ 100.0 44 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 3 c3v2iA_ 100.0 56 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 4 c2z2jA_ 100.0 39 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 5 d1ryba_ 100.0 33 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 6 d1cfza_ 83.8 28 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Hydrogenase maturating endopeptidase HybD 7 c2e85B_ 76.7 13 PDB header:hydrolase Chain: B: PDB Molecule:hydrogenase 3 maturation protease; PDBTitle: crystal structure of the hydrogenase 3 maturation protease 8 d1c8ba_ 50.1 43 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease 9 c2jvaA_ 39.2 30 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 10 d2ea9a1 36.7 24 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 11 d2inwa1 34.8 21 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 12 c3tgnA_ 33.9 17 PDB header:transcription Chain: A: PDB Molecule:adc operon repressor adcr; PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state 13 d2h28a1 33.0 21 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 14 c2jy9A_ 32.4 11 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 15 c3pu6A_ 31.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes 16 c3mpoD_ 23.3 11 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 17 c3gygA_ 21.0 13 PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis 18 d1am7a_ 20.5 12 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Lambda lysozyme 19 c3ippA_ 20.4 15 PDB header:transferase Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje; PDBTitle: crystal structure of sulfur-free ynje 20 c3s2wB_ 17.0 3 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1 21 c2bb3B_ not modelled 16.0 30 PDB header:transferase Chain: B: PDB Molecule:cobalamin biosynthesis precorrin-6y methylase (cbie); PDBTitle: crystal structure of cobalamin biosynthesis precorrin-6y methylase2 (cbie) from archaeoglobus fulgidus 22 c1ynmA_ not modelled 15.3 22 PDB header:hydrolase Chain: A: PDB Molecule:r.hinp1i restriction endonuclease; PDBTitle: crystal structure of restriction endonuclease hinp1i 23 d2nqra3 not modelled 15.3 20 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 24 c3kp3B_ not modelled 14.0 3 PDB header:transcription regulator/antibiotic Chain: B: PDB Molecule:transcriptional regulator tcar; PDBTitle: staphylococcus epidermidis in complex with ampicillin 25 c3n39D_ not modelled 13.9 19 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 26 c1ujlA_ not modelled 13.4 16 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 27 c3ndcB_ not modelled 13.4 31 PDB header:transferase Chain: B: PDB Molecule:precorrin-4 c(11)-methyltransferase; PDBTitle: crystal structure of precorrin-4 c11-methyltransferase from2 rhodobacter capsulatus 28 d2bb3a1 not modelled 13.3 33 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 29 c3hzuA_ not modelled 13.2 18 PDB header:transferase Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea; PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis 30 c2jcyA_ not modelled 11.8 33 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis 31 c2ofpB_ not modelled 10.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:ketopantoate reductase; PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate 32 d1r0ka3 not modelled 10.7 26 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 33 d1s2oa1 not modelled 10.6 23 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 34 c3bpqD_ not modelled 10.4 39 PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 35 d1q0qa3 not modelled 10.3 22 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 36 c3e8mD_ not modelled 10.1 19 PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily 37 c3ecoB_ not modelled 9.9 3 PDB header:transcription Chain: B: PDB Molecule:mepr; PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa 38 c3av6A_ not modelled 9.8 23 PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: crystal structure of mouse dna methyltransferase 1 with adomet 39 d1lama2 not modelled 9.8 25 Fold:Macro domain-like Superfamily:Macro domain-like Family:Leucine aminopeptidase (Aminopeptidase A), N-terminal domain 40 c3euwB_ not modelled 9.7 19 PDB header:oxidoreductase Chain: B: PDB Molecule:myo-inositol dehydrogenase; PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032 41 c3n1uA_ not modelled 9.5 23 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 42 c3bj6B_ not modelled 9.0 6 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 43 c1uarA_ not modelled 9.0 19 PDB header:transferase Chain: A: PDB Molecule:rhodanese; PDBTitle: crystal structure of rhodanese from thermus thermophilus hb8 44 d3eeqa2 not modelled 8.9 22 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 45 d2bgxa2 not modelled 8.7 15 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 46 d1fima_ not modelled 8.3 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 47 d1bofa2 not modelled 8.0 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:G proteins 48 d1wvia_ not modelled 8.0 7 Fold:HAD-like Superfamily:HAD-like Family:NagD-like 49 c3rfqC_ not modelled 7.4 14 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 50 d1mv8a2 not modelled 7.3 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 51 c3ikmD_ not modelled 7.3 26 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 52 d2etha1 not modelled 7.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 53 d2nu7b2 not modelled 7.1 18 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Succinyl-CoA synthetase, beta-chain, N-terminal domain 54 c3fzqA_ not modelled 7.1 19 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution 55 c2bh7A_ not modelled 7.1 15 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 56 c2zetD_ not modelled 7.1 9 PDB header:signaling protein Chain: D: PDB Molecule:melanophilin; PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin 57 d1k1ea_ not modelled 7.0 8 Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI 58 c3r6mD_ not modelled 6.9 29 PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz 59 c3l6dB_ not modelled 6.9 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440 60 d2f1ka2 not modelled 6.8 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 61 c3kbqA_ not modelled 6.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 62 c1okgA_ not modelled 6.7 5 PDB header:transferase Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase; PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major 63 c3mn1B_ not modelled 6.6 8 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 64 d1ys9a1 not modelled 6.6 10 Fold:HAD-like Superfamily:HAD-like Family:NagD-like 65 c2cftA_ not modelled 6.5 23 PDB header:phosphatase Chain: A: PDB Molecule:pyridoxal phosphate phosphatase; PDBTitle: crystal structure of human pyridoxal 5'-phosphate2 phosphatase with its substrate 66 c3nt5B_ not modelled 6.5 25 PDB header:oxidoreductase Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose 67 c2p9jH_ not modelled 6.4 10 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:hypothetical protein aq2171; PDBTitle: crystal structure of aq2171 from aquifex aeolicus 68 c3boqB_ not modelled 6.4 7 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi 69 c2xtsD_ not modelled 6.1 13 PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus 70 c3oopA_ not modelled 6.0 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 71 d1gcya1 not modelled 5.8 67 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 72 c2hx1D_ not modelled 5.8 24 PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution 73 d2al3a1 not modelled 5.8 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 74 c2r8zC_ not modelled 5.6 19 PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion 75 d1yv9a1 not modelled 5.6 3 Fold:HAD-like Superfamily:HAD-like Family:NagD-like 76 d1k47a2 not modelled 5.4 7 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 77 d1kmma1 not modelled 5.4 16 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 78 d1y5ea1 not modelled 5.4 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 79 d1s3ja_ not modelled 5.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 80 c2pjkA_ not modelled 5.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 81 d2j49a1 not modelled 5.3 8 Fold:Taf5 N-terminal domain-like Superfamily:Taf5 N-terminal domain-like Family:Taf5 N-terminal domain-like 82 c3e6mD_ not modelled 5.2 9 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 83 c3au9A_ not modelled 5.2 30 PDB header:isomerase/isomerase inhibitor Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of the quaternary complex-1 of an isomerase 84 d1ydfa1 not modelled 5.1 7 Fold:HAD-like Superfamily:HAD-like Family:NagD-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0