Email l.a.kelley@imperial.ac.uk Description P60869 Date Thu Jan 5 12:07:13 GMT 2012 Unique Job ID 12a21bd2baa0167c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vcta2 99.5 23 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 2 d2fy8a2 99.5 13 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 3 c2bknA_ 99.5 18 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein ph0236; PDBTitle: structure analysis of unknown function protein 4 c3jxoB_ 99.3 20 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 5 c2fy8A_ 99.1 23 PDB header:transport protein Chain: A: PDB Molecule:calcium-gated potassium channel mthk; PDBTitle: crystal structure of mthk rck domain in its ligand-free gating-ring2 form 6 c1lnqC_ 99.1 23 PDB header:metal transport Chain: C: PDB Molecule:potassium channel related protein; PDBTitle: crystal structure of mthk at 3.3 a 7 c3l4bG_ 98.5 20 PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 8 c3mt5A_ 97.7 10 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:potassium large conductance calcium-activated channel, PDBTitle: crystal structure of the human bk gating apparatus 9 c3u6nC_ 97.7 9 PDB header:transport protein Chain: C: PDB Molecule:high-conductance ca2+-activated k+ channel protein; PDBTitle: open structure of the bk channel gating ring 10 c2ka9A_ 87.5 14 PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide 11 c3nafA_ 85.1 14 PDB header:ion transport Chain: A: PDB Molecule:calcium-activated potassium channel subunit alpha-1; PDBTitle: structure of the intracellular gating ring from the human high-2 conductance ca2+ gated k+ channel (bk channel) 12 c1u3bA_ 77.7 15 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains 13 d1zud21 76.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 14 d2cu3a1 76.0 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 15 c2kl0A_ 72.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 16 c3r0hA_ 70.3 18 PDB header:peptide binding protein Chain: A: PDB Molecule:inactivation-no-after-potential d protein; PDBTitle: structure of inad pdz45 in complex with ng2 peptide 17 c3cwiA_ 64.6 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 18 d1tygb_ 62.9 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 19 c2zc3F_ 59.1 9 PDB header:biosynthetic protein Chain: F: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae 20 c1p1dA_ 56.0 15 PDB header:protein binding Chain: A: PDB Molecule:glutamate receptor interacting protein; PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins 21 c1tygG_ not modelled 53.0 20 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 22 d1v62a_ not modelled 50.8 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 23 c2jreA_ not modelled 48.1 14 PDB header:de novo protein Chain: A: PDB Molecule:c60-1 pdz domain peptide; PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis 24 c2d8iA_ not modelled 44.8 17 PDB header:immune system, signaling protein Chain: A: PDB Molecule:t-cell lymphoma invasion and metastasis 1 PDBTitle: solution structure of the pdz domain of t-cell lymphoma2 invasion and metastasis 1 varian 25 c2ejyA_ not modelled 43.1 24 PDB header:membrane protein Chain: A: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: solution structure of the p55 pdz t85c domain complexed2 with the glycophorin c f127c peptide 26 d1qlca_ not modelled 40.9 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 27 c3ggeA_ not modelled 40.6 19 PDB header:protein binding Chain: A: PDB Molecule:pdz domain-containing protein gipc2; PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2 28 c2qt5A_ not modelled 39.5 18 PDB header:peptide binding protein Chain: A: PDB Molecule:glutamate receptor-interacting protein 1; PDBTitle: crystal structure of grip1 pdz12 in complex with the fras12 peptide 29 d1wi2a_ not modelled 39.2 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 30 d1uhpa_ not modelled 38.5 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 31 d1i16a_ not modelled 38.3 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Interleukin 16 32 d1d5ga_ not modelled 37.1 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 33 d1um1a_ not modelled 35.6 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 34 c2xkxB_ not modelled 34.9 16 PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain 35 c2xrfA_ not modelled 34.9 26 PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2 36 d1wf8a1 not modelled 33.8 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 37 c2fneB_ not modelled 31.8 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 13th pdz domain of mpdz 38 c4a8aI_ not modelled 30.7 19 PDB header:hydrolase/hydrolase Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq; PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme 39 c2dazA_ not modelled 30.0 16 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the 7th pdz domain of inad-like2 protein 40 c2d92A_ not modelled 28.9 16 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the fifth pdz domain of inad-like2 protein 41 d2byga1 not modelled 28.6 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 42 c2yt7A_ not modelled 28.6 18 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 43 c2dluA_ not modelled 28.1 22 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the second pdz domain of human inad-2 like protein 44 d2fe5a1 not modelled 27.9 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 45 d1v6ba_ not modelled 27.8 12 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 46 c3tl6B_ not modelled 27.8 21 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 47 c2djtA_ not modelled 27.7 16 PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structures of the pdz domain of human unnamed2 protein product 48 d1rp5a2 not modelled 27.0 9 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 49 c2dm8A_ not modelled 26.6 13 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the eighth pdz domain of human inad-2 like protein 50 d1uita_ not modelled 26.4 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 51 c3kzeA_ not modelled 25.9 21 PDB header:signaling protein Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing protein 1; PDBTitle: crystal structure of t-cell lymphoma invasion and metastasis-1 pdz in2 complex with ssrkeyya peptide 52 d1pyya2 not modelled 25.4 9 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 53 d1tp5a1 not modelled 24.7 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 54 d1x6da1 not modelled 24.6 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Interleukin 16 55 c2rqeA_ not modelled 24.4 15 PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition 56 d1ufxa_ not modelled 24.3 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 57 d1g9oa_ not modelled 24.0 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 58 c2ogpA_ not modelled 23.3 17 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of the second pdz domain of par-3 59 c3krmB_ not modelled 23.1 12 PDB header:rna binding protein Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein PDBTitle: imp1 kh34 60 d1zoka1 not modelled 23.0 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 61 c2opgB_ not modelled 22.7 13 PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz 62 d1x5qa1 not modelled 22.5 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 63 d1rzxa_ not modelled 22.4 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 64 c2dmzA_ not modelled 21.8 12 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the third pdz domain of human inad-2 like protein 65 d2i0ia1 not modelled 21.7 27 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 66 d1va8a1 not modelled 21.7 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 67 d1be9a_ not modelled 21.5 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 68 d1r61a_ not modelled 21.0 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Putative cyclase Family:Putative cyclase 69 c3npgD_ not modelled 20.3 17 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 70 d2fnea1 not modelled 20.1 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 71 d1wgka_ not modelled 19.8 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 72 c2vwrA_ not modelled 19.7 15 PDB header:protein-binding Chain: A: PDB Molecule:ligand of numb protein x 2; PDBTitle: crystal structure of the second pdz domain of numb-binding2 protein 2 73 c2hc8A_ not modelled 19.6 16 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 74 c2yubA_ not modelled 19.6 10 PDB header:transferase Chain: A: PDB Molecule:lim domain kinase 2; PDBTitle: solution structure of the pdz domain from mouse lim domain2 kinase 75 c2eehA_ not modelled 19.4 22 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7 76 d1n7ea_ not modelled 19.2 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 77 c1mhsA_ not modelled 18.9 18 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 78 c3ixzA_ not modelled 18.8 15 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 79 c2k1zA_ not modelled 17.4 16 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of par-3 pdz3 80 c2egkC_ not modelled 17.1 18 PDB header:protein binding Chain: C: PDB Molecule:general receptor for phosphoinositides 1- PDBTitle: crystal structure of tamalin pdz-intrinsic ligand fusion2 protein 81 d1whaa_ not modelled 17.1 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 c2jilA_ not modelled 16.4 20 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1) 83 c2vspA_ not modelled 16.3 24 PDB header:transport protein Chain: A: PDB Molecule:pdz domain-containing protein 1; PDBTitle: crystal structure of the fourth pdz domain of pdz domain-2 containing protein 1 84 c2xlkB_ not modelled 16.2 16 PDB header:hydrolase/rna Chain: B: PDB Molecule:csy4 endoribonuclease; PDBTitle: crystal structure of the csy4-crrna complex, orthorhombic form 85 d1ozia_ not modelled 16.0 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 86 d1wpga1 not modelled 15.9 19 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 87 d1ueqa_ not modelled 15.8 13 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 88 c2q3gA_ not modelled 15.4 22 PDB header:structural genomics Chain: A: PDB Molecule:pdz and lim domain protein 7; PDBTitle: structure of the pdz domain of human pdlim7 bound to a c-2 terminal extension from human beta-tropomyosin 89 c2k9xA_ not modelled 15.2 26 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 90 d2piaa1 not modelled 15.2 29 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 91 d1qava_ not modelled 14.8 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 92 d1wi4a1 not modelled 14.8 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 93 c3kw0D_ not modelled 14.5 38 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 94 d1kwaa_ not modelled 14.5 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 95 d1y7ma2 not modelled 14.4 10 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 96 c3pr9A_ not modelled 14.3 24 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 97 d2h1qa1 not modelled 14.1 15 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 98 c2gzvA_ not modelled 14.1 31 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 99 c3eggC_ not modelled 13.9 17 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin