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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4a8aI_

Fold library idPDB HeaderMoleculeTitle
c4a8aI_PDB header: hydrolase/hydrolaseChain: I: PDB Molecule: periplasmic ph-dependent serine endoprotease degq;PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme


Added to library: Sat Dec 31 17:03:43 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PLPSLAPMLEKVLPAVVSVRVEGTAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAK
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Known secondary structure (DSSP)



STT
SSS

TTTT
GGGGTS
STTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLE
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Known secondary structure (DSSP) TTTTSS

S







GGG

S
STT
SS

S
SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLG
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Known secondary structure (DSSP)

S


TT
TTTTS


TTSS

S
TTSS


TTSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence IKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTK
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Known secondary structure (DSSP)


B


S

TTSS
BB




TTSGGGSS


TT

SSSSB

TTTS
SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence VKLGLLRNGKPLEVEVSAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRD
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Known secondary structure (DSSP)



TTSS









SSSS


S

B
TTTTSS

S
B




SSSSS

TT
TTB
 .........360.........370.........380.....
Sequence RVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMR
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Known secondary structure (DSSP)

SS

SSTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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