PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1p1dA_

Fold library id	PDB Header	Molecule	Title
c1p1dA_	PDB header: protein binding	Chain: A: PDB Molecule: glutamate receptor interacting protein;	PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins

Links to external resources
Added to library: Tue Mar 16 12:43:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q V V H T E T T E V V L T A D P V T G F G I Q L Q G S V F A T E T L S S P P L I S Y I E A D S P A E R C G V L Q I G D R V M A I N G I P T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T B
S S
S S S
S
S
T T S T S
S S
T T B
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D S T F E E A N Q L L R D S S I T S K V T L E I E F D V A E S V I P S S G T F H V K L P K K H S V E L G I T I S S P S S R K P G D P L V I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T
S S S
S
S
B
S S
S S
S
S S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . .

Sequence D I K K G S V A H R T G T L E L G D K L L A I D N I R L D S C S M E D A V Q I L Q Q C E D L V K L K I R K D E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T S
T T
T T G G G
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	V	V	H	T	E	T	T	E	V	V	L	T	A	D	P	V	T	G	F	G	I	Q	L	Q	G	S	V	F	A	T	E	T	L	S	S	P	P	L	I	S	Y	I	E	A	D	S	P	A	E	R	C	G	V	L	Q	I	G	D	R	V	M	A	I	N	G	I	P	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															B	T	T	T	B									S	S		S	S	S		S		S								T	T	S					T	S				S	S							T	T	B		S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	S	T	F	E	E	A	N	Q	L	L	R	D	S	S	I	T	S	K	V	T	L	E	I	E	F	D	V	A	E	S	V	I	P	S	S	G	T	F	H	V	K	L	P	K	K	H	S	V	E	L	G	I	T	I	S	S	P	S	S	R	K	P	G	D	P	L	V	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S											T			S	S	S										S		S			B			S	S										S	S										S		S	S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence	D	I	K	K	G	S	V	A	H	R	T	G	T	L	E	L	G	D	K	L	L	A	I	D	N	I	R	L	D	S	C	S	M	E	D	A	V	Q	I	L	Q	Q	C	E	D	L	V	K	L	K	I	R	K	D	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S					T	S				T	T							T	T			G	G	G														T	T