Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Q	R	T	I	V	C	P	L	I	Q	N	D	G	A	Y	L	L	C	K	M	A	D	D	R	G	V	F	P	G	Q	W	A	I	S	G	G	G	V	E	P	G	E	R	I	E	E	A	L	R	R	E	I	R	E	E	L	G	E
Secondary structure
SS confidence
Disorder		?	?	?																							?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	L	L	L	T	E	I	T	P	W	T	F	S	D	D	I	R	T	K	T	Y	A	D	G	R	K	E	E	I	Y	M	I	Y	L	I	F	D	C	V	S	A	N	R	E	V	K	I	N	E	E	F	Q	D	Y	A	W	V	K	P	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Sequence		D	L	V	H	Y	D	L	N	V	A	T	R	K	T	L	R	L	K	G	L	L
Secondary structure
SS confidence
Disorder																			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3n77 chain B Region: 1 - 141 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 86% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 3gwy chain A Region: 1 - 138 Aligned: 118 Modelled: 138 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis Phyre2 PDB 1pun chain A Region: 1 - 141 Aligned: 128 Modelled: 141 Confidence: 99.9% Identity: 20% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3hhj chain A Region: 4 - 138 Aligned: 124 Modelled: 135 Confidence: 99.9% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 3ef5 chain A Region: 4 - 138 Aligned: 122 Modelled: 135 Confidence: 99.9% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp Phyre2 PDB 2pq1 chain B Region: 1 - 138 Aligned: 125 Modelled: 138 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 3grn chain B Region: 1 - 138 Aligned: 127 Modelled: 127 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 3fk9 chain B Region: 4 - 138 Aligned: 124 Modelled: 135 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans Phyre2 PDB 1rya chain A Region: 3 - 133 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 22% Fold: Nudix Superfamily: Nudix Family: GDP-mannose mannosyl hydrolase NudD Phyre2 PDB 3exq chain A Region: 3 - 139 Aligned: 126 Modelled: 137 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis Phyre2 PDB 2b0v chain A domain 1 Region: 2 - 138 Aligned: 128 Modelled: 137 Confidence: 99.9% Identity: 20% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3q4i chain A Region: 1 - 138 Aligned: 127 Modelled: 132 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ Phyre2 PDB 3r03 chain B Region: 2 - 138 Aligned: 121 Modelled: 137 Confidence: 99.9% Identity: 31% PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum Phyre2 PDB 2o1c chain B Region: 2 - 138 Aligned: 133 Modelled: 137 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase Phyre2 PDB 3cng chain C Region: 2 - 138 Aligned: 122 Modelled: 124 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 3h95 chain A Region: 3 - 138 Aligned: 118 Modelled: 118 Confidence: 99.9% Identity: 25% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 2fkb chain A domain 1 Region: 1 - 137 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 26% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 1ppv chain A Region: 3 - 124 Aligned: 117 Modelled: 122 Confidence: 99.9% Identity: 25% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2qjo chain B Region: 6 - 136 Aligned: 129 Modelled: 131 Confidence: 99.9% Identity: 18% PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. Phyre2 PDB 3dku chain B Region: 2 - 136 Aligned: 124 Modelled: 135 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 1 c3n77B_ 2 c3gwyA_ 3 d1puna_ 4 c3hhjA_ 5 c3ef5A_ 6 c2pq1B_ 7 c3grnB_ 8 c3fk9B_ 9 d1ryaa_ 10 c3exqA_ 11 d2b0va1 12 c3q4iA_ 13 c3r03B_ 14 c2o1cB_ 15 c3cngC_ 16 c3h95A_ 17 d2fkba1 18 d1ppva_ 19 c2qjoB_ 20 c3dkuB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3n77B_ 100.0 86 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 2 c3gwyA_ 99.9 23 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 3 d1puna_ 99.9 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 4 c3hhjA_ 99.9 27 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 5 c3ef5A_ 99.9 28 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 6 c2pq1B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 7 c3grnB_ 99.9 25 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 8 c3fk9B_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 9 d1ryaa_ 99.9 22 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 10 c3exqA_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 11 d2b0va1 99.9 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 12 c3q4iA_ 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 13 c3r03B_ 99.9 31 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 14 c2o1cB_ 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 15 c3cngC_ 99.9 19 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 16 c3h95A_ 99.9 25 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 17 d2fkba1 99.9 26 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 18 d1ppva_ 99.9 25 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 19 c2qjoB_ 99.9 18 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 20 c3dkuB_ 99.9 16 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 21 d1k2ea_ not modelled 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 22 d1hzta_ not modelled 99.9 25 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 23 c3o8sA_ not modelled 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 24 d2b06a1 not modelled 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 25 d1irya_ not modelled 99.9 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 26 c2kdvA_ not modelled 99.9 21 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 27 c2r5wA_ not modelled 99.9 18 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 28 c3gz8C_ not modelled 99.9 15 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 29 d1vk6a2 not modelled 99.9 19 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 30 d1sjya_ not modelled 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 31 c3f6aA_ not modelled 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 32 c3sonB_ not modelled 99.8 17 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 33 d1vcda1 not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 d1xsba_ not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 35 c3gg6A_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 36 d1x51a1 not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 37 c3i9xA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 38 c2gb5B_ not modelled 99.8 19 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 39 c3fcmA_ not modelled 99.8 12 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 40 c2pqvA_ not modelled 99.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 41 d1ktga_ not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 42 d2azwa1 not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 43 d2fb1a2 not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 44 c1rrqA_ not modelled 99.8 16 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 45 c2yyhC_ not modelled 99.8 25 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 46 d1jkna_ not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 47 c2i6kA_ not modelled 99.8 21 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 48 c3gz6A_ not modelled 99.8 15 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 49 c2fb1A_ not modelled 99.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 50 c2jvbA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 51 d1nqza_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 52 c3fjyB_ not modelled 99.8 18 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 53 d2fvva1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 54 c2fvvA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 55 c2pnyA_ not modelled 99.8 17 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 56 c3edsA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 57 d2a6ta2 not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 58 d1rrqa2 not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 59 c2qkmF_ not modelled 99.8 15 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 60 d2o5fa1 not modelled 99.8 27 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 61 d2fmla2 not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 62 c3rh7A_ not modelled 99.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 63 c3id9B_ not modelled 99.8 25 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 64 c3f13A_ not modelled 99.7 28 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 65 c2yvoA_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 66 d1vhza_ not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 67 c2w4eA_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 68 d1v8ya_ not modelled 99.7 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 69 c2fmlB_ not modelled 99.7 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 70 c3bm4B_ not modelled 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 71 d1g0sa_ not modelled 99.6 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 72 c3e57A_ not modelled 99.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 73 d1mqea_ not modelled 99.6 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 74 c3dupB_ not modelled 99.6 17 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 75 d1q33a_ not modelled 99.5 28 Fold:Nudix Superfamily:Nudix Family:MutT-like 76 c3qsjA_ not modelled 99.5 17 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 77 c3q91D_ not modelled 99.5 19 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 78 c2j8qB_ not modelled 99.5 21 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 79 d1viua_ not modelled 99.4 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 80 d1u20a1 not modelled 99.3 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 81 c3couA_ not modelled 98.1 27 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 97.0 26 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 96.7 21 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d1aopa2 not modelled 11.1 11 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 85 d1g8ta_ not modelled 7.0 7 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:DNA/RNA non-specific endonuclease 86 c2hdnE_ not modelled 6.7 18 PDB header:translation Chain: E: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 87 d2dsya1 not modelled 5.9 29 Fold:TTHA1013/TTHA0281-like Superfamily:TTHA1013/TTHA0281-like Family:TTHA0281-like 88 d2a2la1 not modelled 5.9 25 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 89 d1tnsa_ not modelled 5.6 22 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 90 c3fpvC_ not modelled 5.6 17 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0