Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	M	I	E	V	V	A	A	I	I	E	R	D	G	K	I	L	L	A	Q	R	P	A	Q	S	D	Q	A	G	L	W	E	F	A	G	G	K	V	E	P	D	E	S	Q	R	Q	A	L	V	R	E	L	R	E	E	L	G	I	E
Secondary structure
SS confidence
Disorder		?	?																							?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	V	G	E	Y	V	A	S	H	Q	R	E	V	S	G	R	I	I	H	L	H	A	W	H	V	P	D	F	H	G	T	L	Q	A	H	E	H	Q	A	L	V	W	C	S	P	E	E	A	L	Q	Y	P	L	A	P	A	D	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Sequence		L	L	E	A	F	M	A	L	R	A	A	R	P	A	D
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pun chain A Region: 1 - 128 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 31% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3gwy chain A Region: 1 - 127 Aligned: 120 Modelled: 127 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis Phyre2 PDB 3ef5 chain A Region: 3 - 132 Aligned: 130 Modelled: 130 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp Phyre2 PDB 3hhj chain A Region: 3 - 127 Aligned: 125 Modelled: 125 Confidence: 99.9% Identity: 33% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 3grn chain B Region: 1 - 127 Aligned: 127 Modelled: 127 Confidence: 99.9% Identity: 30% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 3exq chain A Region: 3 - 130 Aligned: 128 Modelled: 128 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis Phyre2 PDB 1vk6 chain A domain 2 Region: 2 - 128 Aligned: 125 Modelled: 126 Confidence: 99.9% Identity: 24% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 3n77 chain B Region: 1 - 124 Aligned: 124 Modelled: 124 Confidence: 99.9% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 2gb5 chain B Region: 2 - 128 Aligned: 125 Modelled: 126 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 1iry chain A Region: 1 - 128 Aligned: 127 Modelled: 128 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3r03 chain B Region: 1 - 126 Aligned: 121 Modelled: 126 Confidence: 99.9% Identity: 39% PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum Phyre2 PDB 2pq1 chain B Region: 1 - 129 Aligned: 124 Modelled: 129 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 2b06 chain A domain 1 Region: 1 - 132 Aligned: 128 Modelled: 132 Confidence: 99.9% Identity: 25% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3cng chain C Region: 6 - 129 Aligned: 122 Modelled: 122 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 3fk9 chain B Region: 4 - 127 Aligned: 120 Modelled: 124 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans Phyre2 PDB 2b0v chain A domain 1 Region: 2 - 129 Aligned: 127 Modelled: 128 Confidence: 99.9% Identity: 24% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1rrq chain A Region: 2 - 126 Aligned: 117 Modelled: 125 Confidence: 99.9% Identity: 17% PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair Phyre2 PDB 3dku chain B Region: 2 - 129 Aligned: 126 Modelled: 128 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 1vcd chain A domain 1 Region: 3 - 127 Aligned: 120 Modelled: 125 Confidence: 99.9% Identity: 27% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3h95 chain A Region: 4 - 129 Aligned: 122 Modelled: 126 Confidence: 99.9% Identity: 18% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 1 d1puna_ 2 c3gwyA_ 3 c3ef5A_ 4 c3hhjA_ 5 c3grnB_ 6 c3exqA_ 7 d1vk6a2 8 c3n77B_ 9 c2gb5B_ 10 d1irya_ 11 c3r03B_ 12 c2pq1B_ 13 d2b06a1 14 c3cngC_ 15 c3fk9B_ 16 d2b0va1 17 c1rrqA_ 18 c3dkuB_ 19 d1vcda1 20 c3h95A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1puna_ 100.0 31 Fold:Nudix Superfamily:Nudix Family:MutT-like 2 c3gwyA_ 100.0 36 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 3 c3ef5A_ 100.0 37 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 4 c3hhjA_ 99.9 33 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 5 c3grnB_ 99.9 30 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 6 c3exqA_ 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 7 d1vk6a2 99.9 24 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 8 c3n77B_ 99.9 27 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 9 c2gb5B_ 99.9 24 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 10 d1irya_ 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 c3r03B_ 99.9 39 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 12 c2pq1B_ 99.9 23 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 13 d2b06a1 99.9 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 14 c3cngC_ 99.9 22 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 15 c3fk9B_ 99.9 25 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 16 d2b0va1 99.9 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 17 c1rrqA_ 99.9 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 18 c3dkuB_ 99.9 25 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 19 d1vcda1 99.9 27 Fold:Nudix Superfamily:Nudix Family:MutT-like 20 c3h95A_ 99.9 18 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 21 d1rrqa2 not modelled 99.9 16 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 22 c3o8sA_ not modelled 99.9 25 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 23 d2fkba1 not modelled 99.9 23 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 24 c3gz8C_ not modelled 99.9 22 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 25 c3q4iA_ not modelled 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 26 c3gg6A_ not modelled 99.9 21 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 27 d1x51a1 not modelled 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 28 d2azwa1 not modelled 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 29 c3fjyB_ not modelled 99.9 26 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 30 d1k2ea_ not modelled 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 31 c2yyhC_ not modelled 99.9 19 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 32 c2kdvA_ not modelled 99.9 23 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 33 d1ryaa_ not modelled 99.9 18 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 34 c2qjoB_ not modelled 99.9 18 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 35 c2o1cB_ not modelled 99.9 23 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 36 d2fb1a2 not modelled 99.9 18 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 37 d1ktga_ not modelled 99.9 27 Fold:Nudix Superfamily:Nudix Family:MutT-like 38 d1sjya_ not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 39 d2fvva1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 40 c2fvvA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 41 c3rh7A_ not modelled 99.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 42 c3i9xA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 43 d1xsba_ not modelled 99.8 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 44 c2r5wA_ not modelled 99.8 23 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 45 c2pqvA_ not modelled 99.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 46 c3gz6A_ not modelled 99.8 22 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 47 d1vhza_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 48 c2jvbA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 49 c2fb1A_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 50 c3f6aA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 51 c3fcmA_ not modelled 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 52 d1jkna_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 53 c3sonB_ not modelled 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 54 c2w4eA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 55 c3id9B_ not modelled 99.8 21 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 56 c3f13A_ not modelled 99.8 23 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 57 d1ppva_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 58 d1hzta_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 59 c2yvoA_ not modelled 99.8 24 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 60 d2a6ta2 not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 61 c3edsA_ not modelled 99.8 24 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 62 d1v8ya_ not modelled 99.8 28 Fold:Nudix Superfamily:Nudix Family:MutT-like 63 d1nqza_ not modelled 99.8 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 64 c2qkmF_ not modelled 99.8 20 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 65 d1g0sa_ not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 66 d2fmla2 not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 67 c3bm4B_ not modelled 99.8 19 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 68 d1mqea_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 69 d2o5fa1 not modelled 99.7 23 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 70 c2fmlB_ not modelled 99.7 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 71 c3e57A_ not modelled 99.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 72 c2i6kA_ not modelled 99.7 19 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 73 c2pnyA_ not modelled 99.7 18 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 74 d1viua_ not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 75 c3q91D_ not modelled 99.6 16 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 76 d1q33a_ not modelled 99.6 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 77 c3dupB_ not modelled 99.5 15 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 78 c3qsjA_ not modelled 99.4 27 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 79 c2j8qB_ not modelled 99.4 21 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 80 d1u20a1 not modelled 99.4 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 81 c3couA_ not modelled 98.7 32 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 97.9 27 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 97.0 22 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 c2vldA_ not modelled 16.0 31 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 85 c3enoB_ not modelled 15.2 19 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 86 c1zwvA_ not modelled 12.5 21 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase 87 c3fpvC_ not modelled 12.3 27 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 88 d2a2la1 not modelled 9.5 36 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 89 c2ivoC_ not modelled 8.2 16 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 90 d1nc7a_ not modelled 6.8 27 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 91 d2dexx3 not modelled 5.7 26 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain 92 c3kngA_ not modelled 5.5 22 PDB header:oxidoreductase Chain: A: PDB Molecule:snoab; PDBTitle: crystal structure of snoab, a cofactor-independent oxygenase2 from streptomyces nogalater, determined to 1.9 resolution 93 c2eq8C_ not modelled 5.4 35 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0