Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	A	N	A	F	V	R	A	R	I	D	E	D	L	K	N	Q	A	A	D	V	L	A	G	M	G	L	T	I	S	D	L	V	R	I	T	L	T	K	V	A	R	E	K	A	L	P	F	D	L	R	E	P	N	Q	L	T	I	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Sequence		S	I	K	N	S	E	A	G	I	D	V	H	K	A	K	D	A	D	D	L	F	D	K	L	G	I
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2k29 chain A Region: 5 - 53 Aligned: 49 Modelled: 49 Confidence: 99.7% Identity: 33% PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb Phyre2 PDB 2bj7 chain A domain 1 Region: 5 - 47 Aligned: 43 Modelled: 43 Confidence: 83.3% Identity: 12% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 1y9b chain A domain 1 Region: 2 - 34 Aligned: 33 Modelled: 33 Confidence: 83.2% Identity: 27% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: VCA0319-like Phyre2 PDB 1p94 chain A Region: 3 - 45 Aligned: 43 Modelled: 43 Confidence: 82.6% Identity: 21% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2keb chain A Region: 9 - 52 Aligned: 44 Modelled: 44 Confidence: 80.2% Identity: 9% PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit Phyre2 PDB 2bj3 chain D Region: 5 - 44 Aligned: 40 Modelled: 40 Confidence: 74.2% Identity: 13% PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo Phyre2 PDB 2bsq chain E domain 1 Region: 5 - 43 Aligned: 39 Modelled: 39 Confidence: 74.2% Identity: 23% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Trafficking protein A-like Phyre2 PDB 1q5v chain B Region: 6 - 46 Aligned: 41 Modelled: 41 Confidence: 73.5% Identity: 22% PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr Phyre2 PDB 2hza chain B domain 1 Region: 7 - 45 Aligned: 39 Modelled: 39 Confidence: 68.8% Identity: 21% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2hza chain A domain 1 Region: 7 - 44 Aligned: 38 Modelled: 38 Confidence: 68.7% Identity: 21% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: CopG-like Phyre2 PDB 2ca9 chain B Region: 5 - 44 Aligned: 40 Modelled: 40 Confidence: 59.3% Identity: 18% PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation Phyre2 PDB 3bq3 chain A Region: 17 - 86 Aligned: 65 Modelled: 70 Confidence: 56.9% Identity: 9% PDB header:cell cycle, ligase Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: crystal structure of s. cerevisiae dcn1 Phyre2 PDB 1mnt chain A Region: 3 - 45 Aligned: 43 Modelled: 43 Confidence: 41.2% Identity: 5% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: Arc/Mnt-like phage repressors Phyre2 PDB 1u5t chain A domain 1 Region: 9 - 30 Aligned: 22 Modelled: 22 Confidence: 35.6% Identity: 5% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 PDB 2fe3 chain B Region: 13 - 86 Aligned: 69 Modelled: 74 Confidence: 31.6% Identity: 13% PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch Phyre2 PDB 1u5t chain A Region: 12 - 44 Aligned: 33 Modelled: 33 Confidence: 31.0% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex Phyre2 PDB 3cuq chain A Region: 12 - 30 Aligned: 19 Modelled: 19 Confidence: 29.7% Identity: 21% PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Phyre2 PDB 2zme chain A Region: 12 - 30 Aligned: 19 Modelled: 19 Confidence: 29.6% Identity: 21% PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Phyre2 PDB 2h1r chain A Region: 11 - 49 Aligned: 37 Modelled: 39 Confidence: 28.1% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:dimethyladenosine transferase, putative; PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum Phyre2 PDB 3lti chain A Region: 3 - 38 Aligned: 36 Modelled: 36 Confidence: 25.5% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains Phyre2 1 c2k29A_ 2 d2bj7a1 3 d1y9ba1 4 d1p94a_ 5 c2kebA_ 6 c2bj3D_ 7 d2bsqe1 8 c1q5vB_ 9 d2hzab1 10 d2hzaa1 11 c2ca9B_ 12 c3bq3A_ 13 d1mnta_ 14 d1u5ta1 15 c2fe3B_ 16 c1u5tA_ 17 c3cuqA_ 18 c2zmeA_ 19 c2h1rA_ 20 c3ltiA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k29A_ 99.7 33 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 2 d2bj7a1 83.3 12 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 3 d1y9ba1 83.2 27 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VCA0319-like 4 d1p94a_ 82.6 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 5 c2kebA_ 80.2 9 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 6 c2bj3D_ 74.2 13 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 7 d2bsqe1 74.2 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Trafficking protein A-like 8 c1q5vB_ 73.5 22 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 9 d2hzab1 68.8 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 10 d2hzaa1 68.7 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 11 c2ca9B_ 59.3 18 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 12 c3bq3A_ 56.9 9 PDB header:cell cycle, ligase Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: crystal structure of s. cerevisiae dcn1 13 d1mnta_ 41.2 5 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 14 d1u5ta1 35.6 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 15 c2fe3B_ 31.6 13 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 16 c1u5tA_ 31.0 15 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 17 c3cuqA_ 29.7 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 18 c2zmeA_ 29.6 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 19 c2h1rA_ 28.1 24 PDB header:transferase Chain: A: PDB Molecule:dimethyladenosine transferase, putative; PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum 20 c3ltiA_ 25.5 19 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 21 c3g5oA_ not modelled 25.5 19 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 22 c3cqrB_ not modelled 23.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast; PDBTitle: crystal structure of the lipocalin domain of violaxanthin2 de-epoxidase (vde) at ph5 23 c1vbiA_ not modelled 22.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 24 c3ebwA_ not modelled 21.5 29 PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches 25 d1i4ua_ not modelled 21.2 0 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 26 c3h87D_ not modelled 20.2 22 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 27 c1u9pA_ not modelled 20.1 5 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 28 c1avoA_ not modelled 18.3 11 PDB header:proteasome activator Chain: A: PDB Molecule:11s regulator; PDBTitle: proteasome activator reg(alpha) 29 d2hsga1 not modelled 17.4 7 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 30 c1rr7A_ not modelled 17.2 11 PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu 31 d1rr7a_ not modelled 17.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor 32 c2g8yB_ not modelled 16.4 8 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 33 d1b28a_ not modelled 16.1 12 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 34 d1gkab_ not modelled 16.0 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 35 c2hzqA_ not modelled 15.9 5 PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone 36 d1qwda_ not modelled 15.8 24 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 37 c2k5jB_ not modelled 15.5 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 38 c3oopA_ not modelled 15.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 39 d1sxjd1 not modelled 15.0 5 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 40 c2fu4B_ not modelled 14.7 14 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 41 d2idba2 not modelled 14.4 10 Fold:UbiD C-terminal domain-like Superfamily:UbiD C-terminal domain-like Family:UbiD C-terminal domain-like 42 d2ff4a2 not modelled 14.0 16 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:BTAD-like 43 c2jucA_ not modelled 13.4 14 PDB header:unknown function Chain: A: PDB Molecule:pre-mrna-splicing factor urn1; PDBTitle: urn1 ff domain yeast 44 d1mzba_ not modelled 13.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 45 d1iwga5 not modelled 12.5 22 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 46 d2vqca1 not modelled 12.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 47 c2vqcA_ not modelled 12.3 20 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 48 d1v92a_ not modelled 10.9 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 49 c2kp6A_ not modelled 10.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 50 d1l6ja1 not modelled 10.4 17 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 51 c2l5pA_ not modelled 10.4 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 52 c2vzaD_ not modelled 10.3 12 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 53 c2xstA_ not modelled 10.2 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 54 c3by0B_ not modelled 10.1 19 PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin 55 c3l4rA_ not modelled 9.8 19 PDB header:allergen, lipid binding protein Chain: A: PDB Molecule:minor allergen can f 2; PDBTitle: crystal structure of the dog lipocalin allergen can f 2 and2 implications for cross-reactivity to the cat allergen fel d 4 56 c2qwwB_ not modelled 9.5 31 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 57 c2k23A_ not modelled 9.1 19 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 58 d1epba_ not modelled 9.0 5 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 59 c1a11A_ not modelled 8.8 15 PDB header:acetylcholine receptor Chain: A: PDB Molecule:acetylcholine receptor m2; PDBTitle: nmr structure of membrane spanning segment 2 of the2 acetylcholine receptor in dpc micelles, 10 structures 60 d2ohwa1 not modelled 8.7 13 Fold:Bacillus chorismate mutase-like Superfamily:YueI-like Family:YueI-like 61 c1eq8A_ not modelled 8.7 15 PDB header:signaling protein Chain: A: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 62 c1eq8E_ not modelled 8.7 15 PDB header:signaling protein Chain: E: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 63 c1eq8C_ not modelled 8.7 15 PDB header:signaling protein Chain: C: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 64 c1eq8B_ not modelled 8.7 15 PDB header:signaling protein Chain: B: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 65 c1eq8D_ not modelled 8.7 15 PDB header:signaling protein Chain: D: PDB Molecule:acetylcholine receptor protein; PDBTitle: three-dimensional structure of the pentameric helical2 bundle of the acetylcholine receptor m2 transmembrane3 segment 66 d1ew3a_ not modelled 8.1 10 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 67 d1gm6a_ not modelled 8.0 14 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 68 d1znda1 not modelled 7.7 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 69 c1z4hA_ not modelled 7.6 13 PDB header:protein binding, dna binding protein Chain: A: PDB Molecule:tor inhibition protein; PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase 70 d2pb9a1 not modelled 7.5 8 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 71 d12asa_ not modelled 7.5 12 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 72 d1uxca_ not modelled 7.4 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 73 c3nrwA_ not modelled 7.3 17 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 74 d1cuka1 not modelled 7.2 18 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 75 c2rn7A_ not modelled 7.2 18 PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 76 d1xkia_ not modelled 7.1 11 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 77 c2jyaA_ not modelled 7.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 78 c3czcA_ not modelled 6.9 14 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 79 c3ld1A_ not modelled 6.8 24 PDB header:hydrolase Chain: A: PDB Molecule:replicase polyprotein 1a; PDBTitle: crystal structure of ibv nsp2a 80 c2w57A_ not modelled 6.6 14 PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains 81 c2rdpA_ not modelled 6.6 22 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus 82 c3iukB_ not modelled 6.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 83 c3ecoB_ not modelled 6.5 17 PDB header:transcription Chain: B: PDB Molecule:mepr; PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa 84 d1efaa1 not modelled 6.3 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 85 c1vjqB_ not modelled 6.3 30 PDB header:structural genomics, de novo protein Chain: B: PDB Molecule:designed protein; PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability. 86 d1yupa1 not modelled 6.3 11 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 87 d1oqya2 not modelled 6.3 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 88 d1qpza1 not modelled 6.2 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 89 c3mr2A_ not modelled 6.2 15 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 90 d2ieaa3 not modelled 6.2 12 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 91 c1vzmB_ not modelled 6.1 25 PDB header:calcium-binding protein Chain: B: PDB Molecule:osteocalcin; PDBTitle: osteocalcin from fish argyrosomus regius 92 c3bx6A_ not modelled 6.0 10 PDB header:signaling protein Chain: A: PDB Molecule:alpha-1-acid glycoprotein; PDBTitle: crystal structure of human alpha 1 acid glycoprotein 93 d1bw6a_ not modelled 6.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 94 d1i94m_ not modelled 6.0 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 95 d1mkma1 not modelled 5.9 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 96 d1zj8a1 not modelled 5.8 17 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 97 d1q9ja2 not modelled 5.7 9 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:NRPS condensation domain (amide synthase) 98 d1dv0a_ not modelled 5.7 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 99 c2idbB_ not modelled 5.6 10 PDB header:lyase Chain: B: PDB Molecule:3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PDBTitle: crystal structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase2 (ubid) from escherichia coli, northeast structural genomics target3 er459.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0