PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bq3A_

Fold library id	PDB Header	Molecule	Title
c3bq3A_	PDB header: cell cycle, ligase	Chain: A: PDB Molecule: defective in cullin neddylation protein 1;	PDBTitle: crystal structure of s. cerevisiae dcn1

Links to external resources
Added to library: Tue Mar 16 14:40:20 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S P E Q E A I E S F T S L T K C D P K V S R K Y L Q R N H W N I N Y A L N D Y Y D K E I G V A H P P V Y P K E L T Q V F E H Y I N N N L F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S
B T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I D S L V K F I E E L G Y N L E D L A T L C L A H L L G Y K K L E E P L K R E D F L S T W F X Q G C S T I S D X Q E C I K T L D V K L H E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
S
T T S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L Q Y F T Q I Y N Y A F N L I L D P N R K D I D T D E G I Q Y W K L F F Q P E Y P V R X E P D L L E A W F R F L R D E G K T T I S K D T W R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T S T T S S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence X L L L F F K R Y P T I Q K I I S D Y D E T A A W P F I I D E F Y E C L Q D Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	P	E	Q	E	A	I	E	S	F	T	S	L	T	K	C	D	P	K	V	S	R	K	Y	L	Q	R	N	H	W	N	I	N	Y	A	L	N	D	Y	Y	D	K	E	I	G	V	A	H	P	P	V	Y	P	K	E	L	T	Q	V	F	E	H	Y	I	N	N	N	L	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											T	T	T	T																					S	S													B	T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	D	S	L	V	K	F	I	E	E	L	G	Y	N	L	E	D	L	A	T	L	C	L	A	H	L	L	G	Y	K	K	L	E	E	P	L	K	R	E	D	F	L	S	T	W	F	X	Q	G	C	S	T	I	S	D	X	Q	E	C	I	K	T	L	D	V	K	L	H	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T			T	T											T	T		S		T	T	S														T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	Q	Y	F	T	Q	I	Y	N	Y	A	F	N	L	I	L	D	P	N	R	K	D	I	D	T	D	E	G	I	Q	Y	W	K	L	F	F	Q	P	E	Y	P	V	R	X	E	P	D	L	L	E	A	W	F	R	F	L	R	D	E	G	K	T	T	I	S	K	D	T	W	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		S															T	S	T	T	S	S																			T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	X	L	L	L	F	F	K	R	Y	P	T	I	Q	K	I	I	S	D	Y	D	E	T	A	A	W	P	F	I	I	D	E	F	Y	E	C	L	Q	D	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S										T	T	S	S															T