Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	E	M	N	Q	L	V	N	T	E	D	S	A	W	P	I	I	Q	N	W	L	K	D	A	T	N	H	T	E	L	L	P	V	N	K	D	L	A	E	T	A	L	Y	Q	L	Q	V	T	T	K	S	P	M	G	A	L	V	Y	G
Secondary structure
SS confidence
Disorder		?	?	?										?																																				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	G	G	L	L	I	D	N	G	X	L	R	I	A	G	S	G	H	P	R	L	P	R	D	P	V	S	W	T	Q	R	P	E	F	A	G	V	R	A	L	P	I	A	D	D	V	A	G	V	I	F	A	L	N	G	G	D	L	G	E
Secondary structure
SS confidence
Disorder																						?	?						?	?	?	?	?	?	?		?	?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	T	G	C	V	Y	Y	F	A	P	D	T	L	N	W	E	S	L	E	V	G	Y	S	E	F	L	Q	W	A	L	S	G	D	L	D	T	F	Y	E	N	V	R	W	Q	Q	W	R	E	D	V	I	K	L	S	A	T	E	A	F	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Sequence		F	Y	P	F	L	W	V	Q	S	E	E	A	R	T	R	K	V	I	S	L	T	E	L	W	E	M	Q	Y	Q	M	K	E	T	F	T	Q
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?					?															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2prv chain A domain 1 Region: 15 - 165 Aligned: 149 Modelled: 148 Confidence: 83.6% Identity: 10% Fold: SMI1/KNR4-like Superfamily: SMI1/KNR4-like Family: SMI1/KNR4-like Phyre2 PDB 3dsm chain A Region: 109 - 137 Aligned: 29 Modelled: 29 Confidence: 64.3% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d. Phyre2 PDB 2pag chain A domain 1 Region: 96 - 128 Aligned: 26 Modelled: 33 Confidence: 49.3% Identity: 23% Fold: SMI1/KNR4-like Superfamily: SMI1/KNR4-like Family: SMI1/KNR4-like Phyre2 PDB 3d5p chain B Region: 33 - 156 Aligned: 120 Modelled: 119 Confidence: 23.1% Identity: 10% PDB header:gene regulation Chain: B: PDB Molecule:putative glucan synthesis regulator of smi1/knr4 family; PDBTitle: crystal structure of a putative glucan synthesis regulator of2 smi1/knr4 family (bf1740) from bacteroides fragilis nctc 9343 at 1.453 a resolution Phyre2 PDB 1jrj chain A Region: 144 - 152 Aligned: 9 Modelled: 9 Confidence: 23.1% Identity: 33% PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol Phyre2 PDB 1d0r chain A Region: 144 - 153 Aligned: 10 Modelled: 10 Confidence: 21.7% Identity: 40% PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water Phyre2 PDB 2hy5 chain C domain 1 Region: 100 - 153 Aligned: 51 Modelled: 54 Confidence: 17.7% Identity: 27% Fold: DsrEFH-like Superfamily: DsrEFH-like Family: DsrH-like Phyre2 PDB 2vt8 chain B Region: 64 - 161 Aligned: 84 Modelled: 84 Confidence: 15.4% Identity: 20% PDB header:hydrolase inhibitor Chain: B: PDB Molecule:proteasome inhibitor pi31 subunit; PDBTitle: structure of a conserved dimerisation domain within fbox72 and pi31 Phyre2 PDB 2dk7 chain A Region: 123 - 134 Aligned: 12 Modelled: 12 Confidence: 14.8% Identity: 25% PDB header:transcription Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of ww domain in transcription elongation2 regulator 1 Phyre2 PDB 3mbq chain C Region: 47 - 70 Aligned: 23 Modelled: 23 Confidence: 14.3% Identity: 22% PDB header:hydrolase Chain: C: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase2 from brucella melitensis, orthorhombic crystal form Phyre2 PDB 1r0l chain D Region: 14 - 46 Aligned: 29 Modelled: 33 Confidence: 13.9% Identity: 28% PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph Phyre2 PDB 1nau chain A Region: 144 - 151 Aligned: 8 Modelled: 8 Confidence: 13.6% Identity: 38% PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles Phyre2 PDB 2rm0 chain W domain 1 Region: 123 - 134 Aligned: 12 Modelled: 12 Confidence: 13.6% Identity: 42% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 1zr7 chain A Region: 123 - 134 Aligned: 12 Modelled: 12 Confidence: 13.1% Identity: 33% PDB header:signaling protein Chain: A: PDB Molecule:huntingtin-interacting protein hypa/fbp11; PDBTitle: solution structure of the first ww domain of fbp11 Phyre2 PDB 2icg chain A domain 1 Region: 17 - 156 Aligned: 138 Modelled: 135 Confidence: 13.0% Identity: 13% Fold: SMI1/KNR4-like Superfamily: SMI1/KNR4-like Family: SMI1/KNR4-like Phyre2 PDB 2uuv chain C Region: 158 - 166 Aligned: 9 Modelled: 9 Confidence: 12.9% Identity: 33% PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 Phyre2 PDB 1ywi chain A domain 1 Region: 123 - 134 Aligned: 12 Modelled: 12 Confidence: 12.5% Identity: 33% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 1ywj chain A Region: 123 - 134 Aligned: 12 Modelled: 12 Confidence: 12.4% Identity: 33% PDB header:structural protein Chain: A: PDB Molecule:formin-binding protein 3; PDBTitle: structure of the fbp11ww1 domain Phyre2 PDB 3iuz chain A Region: 47 - 85 Aligned: 39 Modelled: 39 Confidence: 12.2% Identity: 28% PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase superfamily protein; PDBTitle: crystal structure of putative glyoxalase superfamily protein2 (yp_299723.1) from ralstonia eutropha jmp134 at 1.90 a resolution Phyre2 PDB 1zxo chain A domain 1 Region: 71 - 115 Aligned: 45 Modelled: 45 Confidence: 12.1% Identity: 11% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 1 d2prva1 2 c3dsmA_ 3 d2paga1 4 c3d5pB_ 5 c1jrjA_ 6 c1d0rA_ 7 d2hy5c1 8 c2vt8B_ 9 c2dk7A_ 10 c3mbqC_ 11 c1r0lD_ 12 c1nauA_ 13 d2rm0w1 14 c1zr7A_ 15 d2icga1 16 c2uuvC_ 17 d1ywia1 18 c1ywjA_ 19 c3iuzA_ 20 d1zxoa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2prva1 83.6 10 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 2 c3dsmA_ 64.3 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d. 3 d2paga1 49.3 23 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 4 c3d5pB_ 23.1 10 PDB header:gene regulation Chain: B: PDB Molecule:putative glucan synthesis regulator of smi1/knr4 family; PDBTitle: crystal structure of a putative glucan synthesis regulator of2 smi1/knr4 family (bf1740) from bacteroides fragilis nctc 9343 at 1.453 a resolution 5 c1jrjA_ 23.1 33 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 6 c1d0rA_ 21.7 40 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 7 d2hy5c1 17.7 27 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 8 c2vt8B_ 15.4 20 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:proteasome inhibitor pi31 subunit; PDBTitle: structure of a conserved dimerisation domain within fbox72 and pi31 9 c2dk7A_ 14.8 25 PDB header:transcription Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of ww domain in transcription elongation2 regulator 1 10 c3mbqC_ 14.3 22 PDB header:hydrolase Chain: C: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase2 from brucella melitensis, orthorhombic crystal form 11 c1r0lD_ 13.9 28 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 12 c1nauA_ 13.6 38 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles 13 d2rm0w1 13.6 42 Fold:WW domain-like Superfamily:WW domain Family:WW domain 14 c1zr7A_ 13.1 33 PDB header:signaling protein Chain: A: PDB Molecule:huntingtin-interacting protein hypa/fbp11; PDBTitle: solution structure of the first ww domain of fbp11 15 d2icga1 13.0 13 Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like 16 c2uuvC_ 12.9 33 PDB header:transferase Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase; PDBTitle: alkyldihydroxyacetonephosphate synthase in p1 17 d1ywia1 12.5 33 Fold:WW domain-like Superfamily:WW domain Family:WW domain 18 c1ywjA_ 12.4 33 PDB header:structural protein Chain: A: PDB Molecule:formin-binding protein 3; PDBTitle: structure of the fbp11ww1 domain 19 c3iuzA_ 12.2 28 PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase superfamily protein; PDBTitle: crystal structure of putative glyoxalase superfamily protein2 (yp_299723.1) from ralstonia eutropha jmp134 at 1.90 a resolution 20 d1zxoa1 12.1 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 21 d1zr7a1 not modelled 11.5 33 Fold:WW domain-like Superfamily:WW domain Family:WW domain 22 c1bh0A_ not modelled 11.3 50 PDB header:synthetic hormone Chain: A: PDB Molecule:glucagon; PDBTitle: structure of a glucagon analog 23 d1o6wa2 not modelled 11.2 50 Fold:WW domain-like Superfamily:WW domain Family:WW domain 24 d1qw9a2 not modelled 11.1 47 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 25 c3ks8D_ not modelled 11.1 16 PDB header:viral protein/rna Chain: D: PDB Molecule:polymerase cofactor vp35; PDBTitle: crystal structure of reston ebolavirus vp35 rna binding2 domain in complex with 18bp dsrna 26 d1zbsa2 not modelled 10.9 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 27 c3fkeB_ not modelled 10.7 16 PDB header:rna binding protein Chain: B: PDB Molecule:polymerase cofactor vp35; PDBTitle: structure of the ebola vp35 interferon inhibitory domain 28 c2eghA_ not modelled 10.7 24 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 29 c3mcaA_ not modelled 10.7 22 PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 30 d1o6wa1 not modelled 10.5 27 Fold:WW domain-like Superfamily:WW domain Family:WW domain 31 c3a14B_ not modelled 10.4 31 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 32 c3e53A_ not modelled 10.2 24 PDB header:ligase Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28; PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis 33 d1xdpa3 not modelled 9.8 18 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 34 d1iloa_ not modelled 9.8 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 35 c2zxqA_ not modelled 9.7 21 PDB header:hydrolase Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase; PDBTitle: crystal structure of endo-alpha-n-acetylgalactosaminidase2 from bifidobacterium longum (engbf) 36 c3gafF_ not modelled 9.6 22 PDB header:oxidoreductase Chain: F: PDB Molecule:7-alpha-hydroxysteroid dehydrogenase; PDBTitle: 2.2a crystal structure of 7-alpha-hydroxysteroid2 dehydrogenase from brucella melitensis 37 d2c7fa2 not modelled 9.3 40 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 38 d1r0ka3 not modelled 9.0 30 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 39 d2dk1a1 not modelled 8.8 25 Fold:WW domain-like Superfamily:WW domain Family:WW domain 40 c2qkmG_ not modelled 8.4 22 PDB header:hydrolase Chain: G: PDB Molecule:spbc3b9.21 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 41 d1q67a_ not modelled 8.3 22 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Dcp1 42 c2dk1A_ not modelled 8.0 25 PDB header:gene regulation Chain: A: PDB Molecule:ww domain-binding protein 4; PDBTitle: solution structure of ww domain in ww domain binding2 protein 4 (wbp-4) 43 c2w4lC_ not modelled 8.0 21 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase 44 c1q67B_ not modelled 7.9 22 PDB header:transcription Chain: B: PDB Molecule:decapping protein involved in mrna degradation- PDBTitle: crystal structure of dcp1p 45 c2y3rC_ not modelled 7.9 11 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 46 c3muwE_ not modelled 7.9 67 PDB header:virus Chain: E: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus 47 c1bmxA_ not modelled 7.9 44 PDB header:viral protein Chain: A: PDB Molecule:human immunodeficiency virus type 1 capsid; PDBTitle: hiv-1 capsid protein major homology region peptide analog,2 nmr, 8 structures 48 c1z8yE_ not modelled 7.8 67 PDB header:virus Chain: E: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 49 c1ld4O_ not modelled 7.8 67 PDB header:virus Chain: O: PDB Molecule:spike glycoprotein e1; PDBTitle: placement of the structural proteins in sindbis virus 50 c2alaA_ not modelled 7.4 67 PDB header:viral protein Chain: A: PDB Molecule:structural polyprotein (p130); PDBTitle: crystal structure of the semliki forest virus envelope protein e1 in2 its monomeric conformation. 51 d2alaa2 not modelled 7.4 67 Fold:Viral glycoprotein, central and dimerisation domains Superfamily:Viral glycoprotein, central and dimerisation domains Family:Viral glycoprotein, central and dimerisation domains 52 c1t5qA_ not modelled 7.3 38 PDB header:hormone/growth factor Chain: A: PDB Molecule:gastric inhibitory polypeptide; PDBTitle: solution structure of gip(1-30)amide in tfe/water 53 c3n42F_ not modelled 7.3 67 PDB header:viral protein Chain: F: PDB Molecule:e1 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex (furin2 cleavage) of chikungunya virus. 54 c2xfcD_ not modelled 7.3 67 PDB header:virus Chain: D: PDB Molecule:e1 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the semliki forest virus cryo-em map 55 c2xfbF_ not modelled 7.2 67 PDB header:virus Chain: F: PDB Molecule:e1 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map 56 d1q0qa3 not modelled 7.2 24 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 57 c3tu8A_ not modelled 7.2 35 PDB header:unknown function Chain: A: PDB Molecule:burkholderia lethal factor 1 (blf1); PDBTitle: crystal structure of the burkholderia lethal factor 1 (blf1) 58 c3j0cG_ not modelled 7.1 67 PDB header:virus Chain: G: PDB Molecule:e1 envelope glycoprotein; PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map 59 d1ccwb_ not modelled 6.7 37 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Glutamate mutase, large subunit 60 c3mzlH_ not modelled 6.6 22 PDB header:protein transport Chain: H: PDB Molecule:protein transport protein sec31; PDBTitle: sec13/sec31 edge element, loop deletion mutant 61 c2xhfA_ not modelled 6.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin 5; PDBTitle: crystal structure of peroxiredoxin 5 from alvinella pompejana 62 c3muuA_ not modelled 6.5 67 PDB header:viral protein Chain: A: PDB Molecule:structural polyprotein; PDBTitle: crystal structure of the sindbis virus e2-e1 heterodimer at low ph 63 c6rlxB_ not modelled 6.5 58 PDB header:hormone(muscle relaxant) Chain: B: PDB Molecule:relaxin, b-chain; PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants 64 d3er7a1 not modelled 6.5 24 Fold:Cystatin-like Superfamily:NTF2-like Family:Exig0174-like 65 c2hvwC_ not modelled 6.5 29 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans 66 d1y9ia_ not modelled 6.3 19 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 67 d1yt3a2 not modelled 6.2 13 Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains 68 d1cqqa_ not modelled 6.2 36 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 69 d1twfb_ not modelled 6.1 50 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 70 c3eukL_ not modelled 5.9 14 PDB header:cell cycle Chain: L: PDB Molecule:chromosome partition protein muke; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer 71 d1vq2a_ not modelled 5.6 33 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 72 c2l5aA_ not modelled 5.6 20 PDB header:nuclear protein Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3, PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3 73 d2bsya1 not modelled 5.5 25 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 74 c2kruA_ not modelled 5.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) 75 c2obuA_ not modelled 5.2 38 PDB header:hormone/growth factor Chain: A: PDB Molecule:gastric inhibitory polypeptide; PDBTitle: solution structure of gip in tfe/water 76 d2arca_ not modelled 5.1 15 Fold:Double-stranded beta-helix Superfamily:Regulatory protein AraC Family:Regulatory protein AraC 77 c3fqgA_ not modelled 5.1 22 PDB header:protein binding Chain: A: PDB Molecule:protein din1; PDBTitle: crystal structure of the s. pombe rai1 78 d2a8na1 not modelled 5.1 24 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 79 d1rfza_ not modelled 5.1 42 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 80 c1zxoB_ not modelled 5.1 16 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0