Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP21177
DateThu Jan 5 11:37:58 GMT 2012
Unique Job ID00f82ac27212aff5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2d3tB_
Top template information
PDB header:lyase, oxidoreductase/transferase
Chain: B: PDB Molecule:fatty oxidation complex alpha subunit;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
Confidence and coverage
Confidence:100.0% Coverage: 97%
710 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSN
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Disorder  ??????





















































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   .........70.........80.........90.........100.........110.........120
Sequence  KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCEC
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??????







































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   .........130.........140.........150.........160.........170.........180
Sequence  VLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALK
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?





















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   .........190.........200.........210.........220.........230.........240
Sequence  IGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPKLEPLKLSKIEATMSFTIAKGMV
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??????
?????
?


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?

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   .........250.........260.........270.........280.........290.........300
Sequence  AQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVK
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??













































?????????
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   .........310.........320.........330.........340.........350.........360
Sequence  GKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLL
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Disorder  ???????????
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   .........370.........380.........390.........400.........410.........420
Sequence  NKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQ
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Disorder 




?????

















































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   .........430.........440.........450.........460.........470.........480
Sequence  DTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAW
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?








































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   .........490.........500.........510.........520.........530.........540
Sequence  ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYL
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   .........550.........560.........570.........580.........590.........600
Sequence  LDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKP
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?








?


?
?


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   .........610.........620.........630.........640.........650.........660
Sequence  KKEEDAAVEDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVY
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???????
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   .........670.........680.........690.........700.........710.........720
Sequence  GLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPA
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??????????
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   .........
Sequence  RPVGDLKTA
Secondary structure 





SS confidence 








Disorder  ?????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2d3t chain B

3D model

Region: 1 - 715
Aligned: 710
Modelled: 715
Confidence: 100.0%
Identity: 56%
PDB header:lyase, oxidoreductase/transferase
Chain: B: PDB Molecule:fatty oxidation complex alpha subunit;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v

Phyre2

PDB 2x58 chain B

3D model

Region: 9 - 723
Aligned: 696
Modelled: 706
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: the crystal structure of mfe1 liganded with coa

Phyre2

PDB 2wtb chain A

3D model

Region: 5 - 718
Aligned: 673
Modelled: 694
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fatty acid multifunctional protein (atmfp2);
PDBTitle: arabidopsis thaliana multifuctional protein, mfp2

Phyre2

PDB 1zcj chain A

3D model

Region: 283 - 716
Aligned: 431
Modelled: 434
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase

Phyre2

PDB 3k6j chain A

3D model

Region: 279 - 705
Aligned: 413
Modelled: 424
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein f01g10.3, confirmed by transcript evidence;
PDBTitle: crystal structure of the dehydrogenase part of multifuctional enzyme 12 from c.elegans

Phyre2

PDB 3mog chain A

3D model

Region: 312 - 713
Aligned: 398
Modelled: 402
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxybutyryl-coa dehydrogenase;
PDBTitle: crystal structure of 3-hydroxybutyryl-coa dehydrogenase from2 escherichia coli k12 substr. mg1655

Phyre2

PDB 1m75 chain B

3D model

Region: 313 - 593
Aligned: 281
Modelled: 281
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: crystal structure of the n208s mutant of l-3-hydroxyacyl-2 coa dehydrogenase in complex with nad and acetoacetyl-coa

Phyre2

PDB 1zej chain A

3D model

Region: 315 - 611
Aligned: 274
Modelled: 278
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: crystal structure of the 3-hydroxyacyl-coa dehydrogenase (hbd-9,2 af2017) from archaeoglobus fulgidus dsm 4304 at 2.00 a resolution

Phyre2

PDB 1wdk chain A domain 4

3D model

Region: 1 - 304
Aligned: 304
Modelled: 304
Confidence: 100.0%
Identity: 51%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Crotonase-like

Phyre2

PDB 2ep9 chain A

3D model

Region: 315 - 592
Aligned: 276
Modelled: 278
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-gulonate 3-dehydrogenase;
PDBTitle: crystal structure of the rabbit l-gulonate 3-dehydrogenase2 (nadh form)

Phyre2

PDB 3bpt chain A

3D model

Region: 2 - 307
Aligned: 304
Modelled: 306
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase;
PDBTitle: crystal structure of human beta-hydroxyisobutyryl-coa hydrolase in2 complex with quercetin

Phyre2

PDB 1nzy chain A

3D model

Region: 2 - 310
Aligned: 267
Modelled: 270
Confidence: 100.0%
Identity: 20%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Crotonase-like

Phyre2

PDB 3moy chain A

3D model

Region: 2 - 304
Aligned: 257
Modelled: 264
Confidence: 100.0%
Identity: 28%
PDB header:lyase
Chain: A: PDB Molecule:probable enoyl-coa hydratase;
PDBTitle: crystal structure of probable enoyl-coa hydratase from mycobacterium2 smegmatis

Phyre2

PDB 3g64 chain A

3D model

Region: 4 - 304
Aligned: 261
Modelled: 262
Confidence: 100.0%
Identity: 25%
PDB header:lyase
Chain: A: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of putative enoyl-coa hydratase from streptomyces2 coelicolor a3(2)

Phyre2

PDB 3hin chain A

3D model

Region: 1 - 300
Aligned: 255
Modelled: 259
Confidence: 100.0%
Identity: 22%
PDB header:lyase
Chain: A: PDB Molecule:putative 3-hydroxybutyryl-coa dehydratase;
PDBTitle: crystal structure of putative enoyl-coa hydratase from2 rhodopseudomonas palustris cga009

Phyre2

PDB 3i47 chain A

3D model

Region: 4 - 300
Aligned: 256
Modelled: 258
Confidence: 100.0%
Identity: 22%
PDB header:lyase
Chain: A: PDB Molecule:enoyl coa hydratase/isomerase (crotonase);
PDBTitle: crystal structure of putative enoyl coa hydratase/isomerase2 (crotonase) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1

Phyre2

PDB 1dci chain A

3D model

Region: 6 - 300
Aligned: 256
Modelled: 256
Confidence: 100.0%
Identity: 21%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Crotonase-like

Phyre2

PDB 3ju1 chain A

3D model

Region: 6 - 307
Aligned: 301
Modelled: 302
Confidence: 100.0%
Identity: 15%
PDB header:lyase, isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of enoyl-coa hydratase/isomerase family protein

Phyre2

PDB 2qq3 chain F

3D model

Region: 6 - 304
Aligned: 254
Modelled: 260
Confidence: 100.0%
Identity: 28%
PDB header:lyase
Chain: F: PDB Molecule:enoyl-coa hydratase subunit i;
PDBTitle: crystal structure of enoyl-coa hydrates subunit i (gk_2039)2 other form from geobacillus kaustophilus hta426

Phyre2

PDB 1uiy chain A

3D model

Region: 10 - 300
Aligned: 251
Modelled: 252
Confidence: 100.0%
Identity: 25%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Crotonase-like

Phyre2
1

c2d3tB_
2

c2x58B_
3

c2wtbA_
4

c1zcjA_
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c3k6jA_
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c3mogA_
7

c1m75B_
8

c1zejA_
9

d1wdka4
10

c2ep9A_
11

c3bptA_
12

d1nzya_
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c3moyA_
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c3g64A_
15

c3hinA_
16

c3i47A_
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d1dcia_
18

c3ju1A_
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c2qq3F_
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d1uiya_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d3tB_



100.0 56 PDB header:lyase, oxidoreductase/transferase
Chain: B: PDB Molecule:fatty oxidation complex alpha subunit;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
2c2x58B_



100.0 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: the crystal structure of mfe1 liganded with coa
3c2wtbA_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:fatty acid multifunctional protein (atmfp2);
PDBTitle: arabidopsis thaliana multifuctional protein, mfp2
4c1zcjA_



100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase
5c3k6jA_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein f01g10.3, confirmed by transcript evidence;
PDBTitle: crystal structure of the dehydrogenase part of multifuctional enzyme 12 from c.elegans
6c3mogA_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxybutyryl-coa dehydrogenase;
PDBTitle: crystal structure of 3-hydroxybutyryl-coa dehydrogenase from2 escherichia coli k12 substr. mg1655
7c1m75B_



100.0 36 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: crystal structure of the n208s mutant of l-3-hydroxyacyl-2 coa dehydrogenase in complex with nad and acetoacetyl-coa
8c1zejA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: crystal structure of the 3-hydroxyacyl-coa dehydrogenase (hbd-9,2 af2017) from archaeoglobus fulgidus dsm 4304 at 2.00 a resolution
9d1wdka4



100.0 51 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
10c2ep9A_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-gulonate 3-dehydrogenase;
PDBTitle: crystal structure of the rabbit l-gulonate 3-dehydrogenase2 (nadh form)
11c3bptA_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase;
PDBTitle: crystal structure of human beta-hydroxyisobutyryl-coa hydrolase in2 complex with quercetin
12d1nzya_



100.0 20 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
13c3moyA_



100.0 28 PDB header:lyase
Chain: A: PDB Molecule:probable enoyl-coa hydratase;
PDBTitle: crystal structure of probable enoyl-coa hydratase from mycobacterium2 smegmatis
14c3g64A_



100.0 25 PDB header:lyase
Chain: A: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of putative enoyl-coa hydratase from streptomyces2 coelicolor a3(2)
15c3hinA_



100.0 22 PDB header:lyase
Chain: A: PDB Molecule:putative 3-hydroxybutyryl-coa dehydratase;
PDBTitle: crystal structure of putative enoyl-coa hydratase from2 rhodopseudomonas palustris cga009
16c3i47A_



100.0 22 PDB header:lyase
Chain: A: PDB Molecule:enoyl coa hydratase/isomerase (crotonase);
PDBTitle: crystal structure of putative enoyl coa hydratase/isomerase2 (crotonase) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1
17d1dcia_



100.0 21 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
18c3ju1A_



100.0 15 PDB header:lyase, isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of enoyl-coa hydratase/isomerase family protein
19c2qq3F_



100.0 28 PDB header:lyase
Chain: F: PDB Molecule:enoyl-coa hydratase subunit i;
PDBTitle: crystal structure of enoyl-coa hydrates subunit i (gk_2039)2 other form from geobacillus kaustophilus hta426
20d1uiya_



100.0 25 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
21c2hw5F_



not modelled 100.0 26 PDB header:lyase
Chain: F: PDB Molecule:enoyl-coa hydratase;
PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1
22c3kqfC_



not modelled 100.0 29 PDB header:isomerase
Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: 1.8 angstrom resolution crystal structure of enoyl-coa hydratase from2 bacillus anthracis.
23c3h81A_



not modelled 100.0 28 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase echa8;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis
24c3hrxD_



not modelled 100.0 29 PDB header:lyase
Chain: D: PDB Molecule:probable enoyl-coa hydratase;
PDBTitle: crystal structure of phenylacetic acid degradation protein paag
25d1wz8a1



not modelled 100.0 21 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
26c2vx2D_



not modelled 100.0 24 PDB header:isomerase
Chain: D: PDB Molecule:enoyl-coa hydratase domain-containing protein 3;
PDBTitle: crystal structure of human enoyl coenzyme a hydratase2 domain-containing protein 3 (echdc3)
27c2ej5B_



not modelled 100.0 24 PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase subunit ii;
PDBTitle: crystal structure of gk2038 protein (enoyl-coa hydratase subunit ii)2 from geobacillus kaustophilus
28c3mybA_



not modelled 100.0 28 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase mycobacterium smegmatis
29c2iexA_



not modelled 100.0 24 PDB header:lyase
Chain: A: PDB Molecule:dihydroxynapthoic acid synthetase;
PDBTitle: crystal structure of dihydroxynapthoic acid synthetase (gk2873) from2 geobacillus kaustophilus hta426
30c2ppyE_



not modelled 100.0 27 PDB header:lyase
Chain: E: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydrates (gk_1992) from geobacillus2 kaustophilus hta426
31d1hzda_



not modelled 100.0 29 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
32c3rsiA_



not modelled 100.0 27 PDB header:isomerase
Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: the structure of a putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus atcc 19977 / dsm 44196
33d2fw2a1



not modelled 100.0 18 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
34c3p5mB_



not modelled 100.0 26 PDB header:isomerase
Chain: B: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium avium
35c3trrA_



not modelled 100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
36c3r0oA_



not modelled 100.0 26 PDB header:lyase
Chain: A: PDB Molecule:carnitinyl-coa dehydratase;
PDBTitle: crystal structure of carnitinyl-coa hydratase from mycobacterium avium
37c3peaD_



not modelled 100.0 29 PDB header:isomerase
Chain: D: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of enoyl-coa hydratase from bacillus anthracis str.2 'ames ancestor'
38d1mj3a_



not modelled 100.0 29 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
39c3swxB_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
40c3qxzA_



not modelled 100.0 24 PDB header:lyase,isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
41d1xx4a_



not modelled 100.0 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
42c3njbA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium smegmatis,2 iodide soak
43c3sllC_



not modelled 100.0 23 PDB header:isomerase
Chain: C: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
44d1q52a_



not modelled 100.0 20 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
45c3qxiA_



not modelled 100.0 25 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase echa1;
PDBTitle: crystal structure of enoyl-coa hydratase echa1 from mycobacterium2 marinum
46c3lkeA_



not modelled 100.0 27 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from bacillus2 halodurans
47c3rrvC_



not modelled 100.0 18 PDB header:isomerase
Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium paratuberculosis
48c3gkbA_



not modelled 100.0 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of a putative enoyl-coa hydratase from streptomyces2 avermitilis
49d1ef8a_



not modelled 100.0 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
50c2q35A_



not modelled 100.0 19 PDB header:lyase
Chain: A: PDB Molecule:curf;
PDBTitle: crystal structure of the y82f variant of ech2 decarboxylase domain of2 curf from lyngbya majuscula
51c3q1tB_



not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium avium
52d2f6qa1



not modelled 100.0 21 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
53c2fbmB_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:y chromosome chromodomain protein 1, telomeric isoform b;
PDBTitle: acetyltransferase domain of cdy1
54c3h0uB_



not modelled 100.0 24 PDB header:lyase
Chain: B: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of a putative enoyl-coa hydratase from2 streptomyces avermitilis
55c2f6qA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:peroxisomal 3,2-trans-enoyl-coa isomerase;
PDBTitle: the crystal structure of human peroxisomal delta3, delta2 enoyl coa2 isomerase (peci)
56c2w3pB_



not modelled 100.0 26 PDB header:lyase
Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase;
PDBTitle: boxc crystal structure
57c3oc7A_



not modelled 100.0 23 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of an enoyl-coa hydratase from mycobacterium avium
58c3l3sF_



not modelled 100.0 24 PDB header:isomerase
Chain: F: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of an enoyl-coa hydrotase/isomerase family2 protein from silicibacter pomeroyi
59c3he2C_



not modelled 100.0 21 PDB header:lyase
Chain: C: PDB Molecule:enoyl-coa hydratase echa6;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis
60d1sg4a1



not modelled 100.0 24 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
61d1pjha_



not modelled 100.0 18 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
62c2j5iF_



not modelled 100.0 24 PDB header:lyase
Chain: F: PDB Molecule:p-hydroxycinnamoyl coa hydratase/lyase;
PDBTitle: crystal structure of hydroxycinnamoyl-coa hydratase-lyase
63c3r6hA_



not modelled 100.0 22 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase, echa3;
PDBTitle: crystal structure of an enoyl-coa hydratase (echa3) from mycobacterium2 marinum
64c3m6nA_



not modelled 100.0 23 PDB header:lyase
Chain: A: PDB Molecule:rpff protein;
PDBTitle: crystal structure of rpff
65c3qkaB_



not modelled 100.0 27 PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase, echa5;
PDBTitle: crystal structure of enoyl-coa hydratase echa5 from mycobacterium2 marinum
66c2pg8C_



not modelled 100.0 23 PDB header:ligand binding protein
Chain: C: PDB Molecule:dpgc;
PDBTitle: crystal structure of r254k mutanat of dpgc with bound substrate analog
67c3ot6A_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase family protein2 from psudomonas syringae
68c3isaA_



not modelled 100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of putative enoyl-coa hydratase/isomerase from2 bordetella parapertussis
69c3hp0B_



not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:putative polyketide biosynthesis enoyl-coa
PDBTitle: crystal structure of a putative polyketide biosynthesis2 enoyl-coa hydratase (pksh) from bacillus subtilis
70c3p85A_



not modelled 100.0 24 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure enoyl-coa hydratase from mycobacterium avium
71d2a7ka1



not modelled 100.0 23 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
72c3h02F_



not modelled 100.0 24 PDB header:lyase
Chain: F: PDB Molecule:naphthoate synthase;
PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium.
73c3fduF_



not modelled 100.0 28 PDB header:isomerase
Chain: F: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase from2 acinetobacter baumannii
74c3laoA_



not modelled 100.0 24 PDB header:lyase, isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of enoyl-coa hydratase from pseudomonas2 aeruginosa pa01
75c3omeE_



not modelled 100.0 22 PDB header:lyase
Chain: E: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase from mycobacterium2 smegmatis
76d1szoa_



not modelled 100.0 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
77c1rjnC_



not modelled 100.0 22 PDB header:lyase
Chain: C: PDB Molecule:menb;
PDBTitle: the crystal structure of menb (rv0548c) from mycobacterium2 tuberculosis in complex with the coa portion of naphthoyl coa
78d1rjma_



not modelled 100.0 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
79c3qreA_



not modelled 100.0 27 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase, echa12_1;
PDBTitle: crystal structure of an enoyl-coa hydratase echa12_1 from2 mycobacterium marinum
80c2j5gL_



not modelled 100.0 21 PDB header:hydrolase
Chain: L: PDB Molecule:alr4455 protein;
PDBTitle: the native structure of a beta-diketone hydrolase from the2 cyanobacterium anabaena sp. pcc 7120
81c3qmjA_



not modelled 100.0 22 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase, echa8_6;
PDBTitle: crystal structure of enoyl-coa hydratase echa8_6 from mycobacterium2 marinum
82d1wdka3



not modelled 100.0 67 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
83d1f0ya2



not modelled 100.0 36 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
84d1wdka1



not modelled 100.0 59 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HCDH C-domain-like
85d1f0ya1



not modelled 99.9 37 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HCDH C-domain-like
86d3hdha1



not modelled 99.9 39 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HCDH C-domain-like
87d1wdka2



not modelled 99.9 49 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HCDH C-domain-like
88c1vpdA_



not modelled 99.9 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:tartronate semialdehyde reductase;
PDBTitle: x-ray crystal structure of tartronate semialdehyde reductase2 [salmonella typhimurium lt2]
89d1dlja2



not modelled 99.9 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
90c3d1lB_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative nadp oxidoreductase bf3122;
PDBTitle: crystal structure of putative nadp oxidoreductase bf3122 from2 bacteroides fragilis
91c3pduF_



not modelled 99.8 13 PDB header:oxidoreductase
Chain: F: PDB Molecule:3-hydroxyisobutyrate dehydrogenase family protein;
PDBTitle: crystal structure of gamma-hydroxybutyrate dehydrogenase from2 geobacter sulfurreducens in complex with nadp+
92d1ez4a1



not modelled 99.8 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
93c3pefA_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, nad-binding;
PDBTitle: crystal structure of gamma-hydroxybutyrate dehydrogenase from2 geobacter metallireducens in complex with nadp+
94c3ckyA_



not modelled 99.7 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-hydroxymethyl glutarate dehydrogenase;
PDBTitle: structural and kinetic properties of a beta-hydroxyacid dehydrogenase2 involved in nicotinate fermentation
95c3ggpA_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from a. aeolicus in2 complex with hydroxyphenyl propionate and nad+
96c3dzbA_



not modelled 99.7 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus
97c2g5cD_



not modelled 99.7 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus
98d1uxja1



not modelled 99.7 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
99c1np3B_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa
100c2pv7B_



not modelled 99.7 14 PDB header:isomerase, oxidoreductase
Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm)
PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
101c3ctvA_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: crystal structure of central domain of 3-hydroxyacyl-coa2 dehydrogenase from archaeoglobus fulgidus
102d2g5ca2



not modelled 99.7 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
103c2uyyD_



not modelled 99.6 14 PDB header:cytokine
Chain: D: PDB Molecule:n-pac protein;
PDBTitle: structure of the cytokine-like nuclear factor n-pac
104d1ldma1



not modelled 99.6 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
105c3l6dB_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
106c3b1fA_



not modelled 99.6 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative prephenate dehydrogenase;
PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 mutans
107d1ojua1



not modelled 99.6 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
108d2b0ja2



not modelled 99.6 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
109d2f1ka2



not modelled 99.6 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
110c3dojA_



not modelled 99.6 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydrogenase-like protein;
PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1)
111c2gf2B_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of human hydroxyisobutyrate dehydrogenase
112c2i76B_



not modelled 99.6 10 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein tm1727 from thermotoga maritima
113d2ahra2



not modelled 99.6 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
114c3cumA_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxyisobutyrate dehydrogenase;
PDBTitle: crystal structure of a possible 3-hydroxyisobutyrate dehydrogenase2 from pseudomonas aeruginosa pao1
115d1guza1



not modelled 99.6 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
116c2ahrB_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyrroline carboxylate reductase;
PDBTitle: crystal structures of 1-pyrroline-5-carboxylate reductase from human2 pathogen streptococcus pyogenes
117d1yqga2



not modelled 99.6 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
118d1ldna1



not modelled 99.6 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
119d1llca1



not modelled 99.6 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
120c2f1kD_



not modelled 99.6 10 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of synechocystis arogenate dehydrogenase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0