Secondary structure and disorder prediction

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Sequence		M	N	K	S	Q	L	I	D	K	I	A	A	G	A	D	I	S	K	A	A	A	G	R	A	L	D	A	I	I	A	S	V	T	E	S	L	K	E	G	D	D	V	A	L	V	G	F	G	T	F	A	V	K	E	R	A	A	R	T	G
Secondary structure
SS confidence
Disorder		?	?																																						?															?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Sequence		R	N	P	Q	T	G	K	E	I	T	I	A	A	A	K	V	P	S	F	R	A	G	K	A	L	K	D	A	V	N
Secondary structure
SS confidence
Disorder		?	?	?			?						?																?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1p71 chain A Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 43% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2iif chain A Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 32% PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna Phyre2 PDB 3c4i chain A Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 34% PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] Phyre2 PDB 1owf chain B Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 37% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1owf chain A Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 32% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2np2 chain B Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 33% PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex Phyre2 PDB 1exe chain A Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 34% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1huu chain A Region: 1 - 89 Aligned: 79 Modelled: 89 Confidence: 99.8% Identity: 57% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1mul chain A Region: 1 - 89 Aligned: 75 Modelled: 75 Confidence: 99.7% Identity: 61% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 2o97 chain B domain 1 Region: 1 - 90 Aligned: 71 Modelled: 72 Confidence: 99.7% Identity: 100% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1b8z chain A Region: 1 - 89 Aligned: 66 Modelled: 66 Confidence: 99.6% Identity: 48% Fold: IHF-like DNA-binding proteins Superfamily: IHF-like DNA-binding proteins Family: Prokaryotic DNA-bending protein Phyre2 PDB 1o17 chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 52.3% Identity: 27% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1brw chain A domain 1 Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 51.2% Identity: 20% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1z67 chain A domain 1 Region: 4 - 42 Aligned: 39 Modelled: 39 Confidence: 50.5% Identity: 10% Fold: YidB-like Superfamily: YidB-like Family: YidB-like Phyre2 PDB 3mzy chain A Region: 7 - 43 Aligned: 37 Modelled: 37 Confidence: 46.6% Identity: 16% PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Phyre2 PDB 1o17 chain A Region: 1 - 30 Aligned: 30 Modelled: 30 Confidence: 45.7% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) Phyre2 PDB 1nri chain A Region: 1 - 49 Aligned: 49 Modelled: 49 Confidence: 41.0% Identity: 12% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 1nri chain A Region: 1 - 49 Aligned: 49 Modelled: 49 Confidence: 41.0% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae Phyre2 PDB 3cvj chain B Region: 4 - 49 Aligned: 46 Modelled: 46 Confidence: 38.7% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution Phyre2 PDB 1i27 chain A Region: 1 - 32 Aligned: 32 Modelled: 32 Confidence: 36.7% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal domain of the rap74 subunit of TFIIF Phyre2 1 d1p71a_ 2 c2iifA_ 3 c3c4iA_ 4 d1owfb_ 5 d1owfa_ 6 c2np2B_ 7 d1exea_ 8 d1huua_ 9 d1mula_ 10 d2o97b1 11 d1b8za_ 12 d1o17a1 13 d1brwa1 14 d1z67a1 15 c3mzyA_ 16 c1o17A_ 17 d1nria_ 18 c1nriA_ 19 c3cvjB_ 20 d1i27a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1p71a_ 99.9 43 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 2 c2iifA_ 99.9 32 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 3 c3c4iA_ 99.9 34 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 4 d1owfb_ 99.9 37 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 5 d1owfa_ 99.9 32 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 6 c2np2B_ 99.9 33 PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex 7 d1exea_ 99.9 34 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 8 d1huua_ 99.8 57 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 9 d1mula_ 99.7 61 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 10 d2o97b1 99.7 100 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 11 d1b8za_ 99.6 48 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 12 d1o17a1 52.3 27 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 13 d1brwa1 51.2 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 14 d1z67a1 50.5 10 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 15 c3mzyA_ 46.6 16 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 16 c1o17A_ 45.7 27 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 17 d1nria_ 41.0 12 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 18 c1nriA_ 41.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 19 c3cvjB_ 38.7 13 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 20 d1i27a_ 36.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 21 c2yskA_ not modelled 35.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus 22 d1hq1a_ not modelled 33.7 24 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 23 d1nh2d1 not modelled 32.3 26 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 24 d1vola2 not modelled 32.1 12 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 25 d1dula_ not modelled 31.5 24 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 26 d1khda1 not modelled 31.4 10 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 27 c2jqeA_ not modelled 29.1 24 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 28 d1qb2a_ not modelled 29.0 20 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 29 d2ffha2 not modelled 29.0 24 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 30 c2v79B_ not modelled 28.8 21 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 31 c2vn2B_ not modelled 27.5 13 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 32 d2tpta1 not modelled 26.5 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 33 d1z6ra1 not modelled 24.9 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 34 d2cp9a1 not modelled 24.2 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 35 d1qzxa2 not modelled 23.9 16 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 36 d2o4ta1 not modelled 22.7 13 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 37 d1aipc1 not modelled 22.4 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 38 d1aisb2 not modelled 22.4 18 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 39 c1l0oC_ not modelled 22.3 29 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 40 d1l0oc_ not modelled 22.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 41 d1uoua1 not modelled 21.6 22 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 42 c2krcA_ not modelled 21.1 16 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 43 c1tr8A_ not modelled 20.9 21 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 44 c1otpA_ not modelled 19.8 17 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 45 d1nvpd1 not modelled 19.6 14 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 46 d1xb2b1 not modelled 19.5 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 47 d1ussa_ not modelled 18.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 48 c1brwB_ not modelled 17.7 20 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 49 c3g2bA_ not modelled 17.1 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 50 d1njra_ not modelled 17.0 21 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 51 c1khdD_ not modelled 16.9 10 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 52 d1g8ia_ not modelled 16.8 7 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 53 d1vr3a1 not modelled 14.8 25 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 54 d1uxda_ not modelled 14.7 30 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 55 d1uxca_ not modelled 14.7 30 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 56 c3bwgA_ not modelled 14.0 22 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 57 d1tdza1 not modelled 14.0 18 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 58 d1ee8a1 not modelled 13.9 18 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 59 d1smyf2 not modelled 13.7 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 60 c1dpuA_ not modelled 13.5 12 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 61 d1dpua_ not modelled 13.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 62 d2bjca1 not modelled 13.3 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 63 c1vquB_ not modelled 13.3 14 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 64 d1tk9a_ not modelled 13.3 18 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 65 c2dsjA_ not modelled 13.0 17 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 66 d1v8ga1 not modelled 13.0 19 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 67 d1z05a1 not modelled 12.2 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 68 d1k82a1 not modelled 12.1 21 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 69 d1qpza1 not modelled 12.1 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 70 c2k4jA_ not modelled 12.0 8 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: arsr dna binding domain 71 c2kwpA_ not modelled 12.0 18 PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa 72 d1ay7b_ not modelled 11.7 18 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 73 c3tsuA_ not modelled 11.6 33 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 74 c2l8nA_ not modelled 11.5 37 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 75 d2elca1 not modelled 11.1 19 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 76 c2vfyA_ not modelled 11.0 28 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 77 c1rp3G_ not modelled 11.0 12 PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm 78 d1r2za1 not modelled 10.9 21 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 79 d1v74a_ not modelled 10.8 21 Fold:Colicin D/E5 nuclease domain Superfamily:Colicin D/E5 nuclease domain Family:Colicin D nuclease domain 80 d1efub3 not modelled 10.7 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 81 d1k3xa1 not modelled 10.6 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 82 d2hsga1 not modelled 10.5 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 83 c1v8gB_ not modelled 10.3 19 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 84 d1lcda_ not modelled 10.2 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 85 d1x92a_ not modelled 9.9 11 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 86 d1mkma1 not modelled 9.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 87 c3hugA_ not modelled 9.8 19 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 88 c2bpqB_ not modelled 9.7 22 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 89 c1u5tA_ not modelled 9.5 7 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 90 c2lcvA_ not modelled 9.3 37 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 91 d2i10a1 not modelled 9.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 92 d1ku7a_ not modelled 9.1 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 93 c3kfoA_ not modelled 9.0 20 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup133; PDBTitle: crystal structure of the c-terminal domain from the nuclear pore2 complex component nup133 from saccharomyces cerevisiae 94 d2fq4a1 not modelled 8.9 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 95 c3edpB_ not modelled 8.6 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 96 c3e21A_ not modelled 8.5 13 PDB header:apoptosis Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: crystal structure of faf-1 uba domain 97 d1u5ta1 not modelled 8.5 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 98 c2yvaB_ not modelled 8.5 16 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 99 d1rp3a2 not modelled 8.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0