Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52078
DateTue Jul 17 17:05:11 BST 2012
Unique Job ID91020c197ee4e477

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3okzB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
Confidence and coverage
Confidence:100.0% Coverage: 66%
269 residues ( 66% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQ
Secondary structure 
SS confidence 
Disorder  ????
???????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGY
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  YDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  NTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDK
Secondary structure 
SS confidence 
Disorder 
??
???????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESI
Secondary structure 
SS confidence 
Disorder 
?
?
?????
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  QKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDNSLLRKEQNDTTDKDKTSN
Secondary structure 
SS confidence 
Disorder 
????????????????????????????????????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.....
Sequence  ENSDSTNNSDSSNQQQPATDQNSNQNQGGTQQAPQASNNQNGVVN
Secondary structure 
SS confidence 
Disorder  ?????????????????????????????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3okz chain B

3D model

Region: 51 - 323
Aligned: 269
Modelled: 270
Confidence: 100.0%
Identity: 27%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127

Phyre2

PDB 3pe5 chain B

3D model

Region: 54 - 323
Aligned: 263
Modelled: 264
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103

Phyre2

PDB 3qfi chain A

3D model

Region: 56 - 316
Aligned: 236
Modelled: 247
Confidence: 100.0%
Identity: 31%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190

Phyre2

PDB 3mej chain A

3D model

Region: 39 - 313
Aligned: 248
Modelled: 262
Confidence: 100.0%
Identity: 40%
PDB header:transcriptional regulator
Chain: A: PDB Molecule:transcriptional regulator ywtf;
PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736

Phyre2

PDB 3owq chain B

3D model

Region: 59 - 312
Aligned: 224
Modelled: 241
Confidence: 100.0%
Identity: 34%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin1025 protein;
PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164

Phyre2

PDB 3nro chain A

3D model

Region: 57 - 314
Aligned: 226
Modelled: 242
Confidence: 100.0%
Identity: 33%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo1026 protein;
PDBTitle: crystal structure of putative transcriptional factor lmo1026 from2 listeria monocytogenes (fragment 52-321), northeast structural3 genomics consortium target lmr194

Phyre2

PDB 3nxh chain A

3D model

Region: 58 - 314
Aligned: 214
Modelled: 231
Confidence: 100.0%
Identity: 36%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator yvhj;
PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735.

Phyre2

PDB 1ny8 chain A

3D model

Region: 214 - 234
Aligned: 21
Modelled: 21
Confidence: 20.3%
Identity: 14%
Fold: Alpha-lytic protease prodomain-like
Superfamily: BolA-like
Family: BolA-like

Phyre2

PDB 3bpj chain D

3D model

Region: 222 - 268
Aligned: 47
Modelled: 47
Confidence: 18.3%
Identity: 13%
PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j;
PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha

Phyre2

PDB 3tr3 chain A

3D model

Region: 217 - 234
Aligned: 18
Modelled: 15
Confidence: 16.8%
Identity: 17%
PDB header:unknown function
Chain: A: PDB Molecule:bola;
PDBTitle: structure of a bola protein homologue from coxiella burnetii

Phyre2

PDB 3rgq chain A

3D model

Region: 197 - 236
Aligned: 38
Modelled: 40
Confidence: 15.6%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p

Phyre2

PDB 3vmt chain A

3D model

Region: 6 - 29
Aligned: 24
Modelled: 24
Confidence: 14.3%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: crystal structure of staphylococcus aureus membrane-bound2 transglycosylase in complex with a lipid ii analog

Phyre2

PDB 2dhm chain A

3D model

Region: 214 - 234
Aligned: 21
Modelled: 21
Confidence: 13.9%
Identity: 10%
PDB header:protein binding
Chain: A: PDB Molecule:protein bola;
PDBTitle: solution structure of the bola protein from escherichia coli

Phyre2

PDB 1m56 chain D

3D model

Region: 3 - 22
Aligned: 20
Modelled: 20
Confidence: 13.5%
Identity: 10%
Fold: Single transmembrane helix
Superfamily: Bacterial aa3 type cytochrome c oxidase subunit IV
Family: Bacterial aa3 type cytochrome c oxidase subunit IV

Phyre2

PDB 3o2e chain A

3D model

Region: 214 - 234
Aligned: 21
Modelled: 21
Confidence: 13.5%
Identity: 10%
PDB header:unknown function
Chain: A: PDB Molecule:bola-like protein;
PDBTitle: crystal structure of a bol-like protein from babesia bovis

Phyre2

PDB 2wl8 chain D

3D model

Region: 214 - 251
Aligned: 38
Modelled: 38
Confidence: 13.3%
Identity: 11%
PDB header:protein transport
Chain: D: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray crystal structure of pex19p

Phyre2

PDB 1v60 chain A

3D model

Region: 214 - 234
Aligned: 21
Modelled: 21
Confidence: 12.2%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:riken cdna 1810037g04;
PDBTitle: solution structure of bola1 protein from mus musculus

Phyre2

PDB 2pju chain D

3D model

Region: 129 - 166
Aligned: 38
Modelled: 38
Confidence: 12.0%
Identity: 24%
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr

Phyre2

PDB 4ddp chain A

3D model

Region: 124 - 162
Aligned: 37
Modelled: 39
Confidence: 11.1%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:beclin-1;
PDBTitle: crystal structure of beclin 1 evolutionarily conserved domain(ecd)

Phyre2

PDB 1fpz chain A

3D model

Region: 197 - 234
Aligned: 37
Modelled: 38
Confidence: 11.0%
Identity: 11%
Fold: (Phosphotyrosine protein) phosphatases II
Superfamily: (Phosphotyrosine protein) phosphatases II
Family: Dual specificity phosphatase-like

Phyre2
1
c3okzB_
2
c3pe5B_
3
c3qfiA_
4
c3mejA_
5
c3owqB_
6
c3nroA_
7
c3nxhA_
8
d1ny8a_
9
c3bpjD_
10
c3tr3A_
11
c3rgqA_
12
c3vmtA_
13
c2dhmA_
14
d1m56d_
15
c3o2eA_
16
c2wl8D_
17
c1v60A_
18
c2pjuD_
19
c4ddpA_
20
d1fpza_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3okzB_
100.0 27 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
2c3pe5B_
100.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103
3c3qfiA_
100.0 31 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190
4c3mejA_
100.0 40 PDB header:transcriptional regulator
Chain: A: PDB Molecule:transcriptional regulator ywtf;
PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736
5c3owqB_
100.0 34 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin1025 protein;
PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164
6c3nroA_
100.0 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo1026 protein;
PDBTitle: crystal structure of putative transcriptional factor lmo1026 from2 listeria monocytogenes (fragment 52-321), northeast structural3 genomics consortium target lmr194
7c3nxhA_
100.0 36 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator yvhj;
PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735.
8d1ny8a_
20.3 14 Fold:Alpha-lytic protease prodomain-like
Superfamily:BolA-like
Family:BolA-like
9c3bpjD_
18.3 13 PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j;
PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
10c3tr3A_
16.8 17 PDB header:unknown function
Chain: A: PDB Molecule:bola;
PDBTitle: structure of a bola protein homologue from coxiella burnetii
11c3rgqA_
15.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p
12c3vmtA_
14.3 21 PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: crystal structure of staphylococcus aureus membrane-bound2 transglycosylase in complex with a lipid ii analog
13c2dhmA_
13.9 10 PDB header:protein binding
Chain: A: PDB Molecule:protein bola;
PDBTitle: solution structure of the bola protein from escherichia coli
14d1m56d_
13.5 10 Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
15c3o2eA_
13.5 10 PDB header:unknown function
Chain: A: PDB Molecule:bola-like protein;
PDBTitle: crystal structure of a bol-like protein from babesia bovis
16c2wl8D_
13.3 11 PDB header:protein transport
Chain: D: PDB Molecule:peroxisomal biogenesis factor 19;
PDBTitle: x-ray crystal structure of pex19p
17c1v60A_
12.2 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:riken cdna 1810037g04;
PDBTitle: solution structure of bola1 protein from mus musculus
18c2pjuD_
12.0 24 PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr
19c4ddpA_
11.1 14 PDB header:membrane protein
Chain: A: PDB Molecule:beclin-1;
PDBTitle: crystal structure of beclin 1 evolutionarily conserved domain(ecd)
20d1fpza_
11.0 11 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
21d2pjua1
not modelled 10.5 24 Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
22c1xs3A_
not modelled 8.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein xc975;
PDBTitle: solution structure analysis of the xc975 protein
23c3vp7A_
not modelled 8.6 19 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: crystal structure of the beta-alpha repeated, autophagy-specific2 (bara) domain of vps30/atg6
24c1oheA_
not modelled 8.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
25d1jhfa1
not modelled 8.5 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
26c3jycA_
not modelled 8.3 20 PDB header:metal transport
Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2;
PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution
27d1stza1
not modelled 8.2 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
28c2q5cA_
not modelled 7.7 14 PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
29c1spfA_
not modelled 7.5 33 PDB header:lipoprotein(surface film)
Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c;
PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix
30d1gwya_
not modelled 6.9 12 Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Anemone pore-forming cytolysin
31c3i7aA_
not modelled 6.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase;
PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution
32c3df0C_
not modelled 6.0 23 PDB header:hydrolase
Chain: C: PDB Molecule:calpastatin;
PDBTitle: calcium-dependent complex between m-calpain and calpastatin
33d1v9ja_
not modelled 5.8 17 Fold:Alpha-lytic protease prodomain-like
Superfamily:BolA-like
Family:BolA-like
34c3aygA_
not modelled 5.7 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
35d1p5dx4
not modelled 5.6 11 Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
36c2kwpA_
not modelled 5.3 13 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: solution structure of the aminoterminal domain of e. coli nusa
37d1vc2a1
not modelled 5.3 33 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
38c2kz0A_
not modelled 5.3 17 PDB header:transcription
Chain: A: PDB Molecule:bola family protein;
PDBTitle: solution structure of a bola protein (ech_0303) from ehrlichia2 chaffeensis. seattle structural genomics center for infectious3 disease target ehcha.10365.a
39c2e0tA_
not modelled 5.2 11 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 26;
PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens
40d1xzpa1
not modelled 5.1 17 Fold:Four-helical up-and-down bundle
Superfamily:TrmE connector domain
Family:TrmE connector domain
41d1vh4a_
not modelled 5.1 17 Fold:Single-stranded right-handed beta-helix
Superfamily:Stabilizer of iron transporter SufD
Family:Stabilizer of iron transporter SufD
42d1ohea2
not modelled 5.0 15 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite