PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mejA_

Fold library id	PDB Header	Molecule	Title
c3mejA_	PDB header: transcriptional regulator	Chain: A: PDB Molecule: transcriptional regulator ywtf;	PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736

Links to external resources
Added to library: Sun Aug 29 00:21:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H V S L A R G E Q S V K R I K E F D P G K D S F S V L L L G I D Q A R S D A N V L V T F N R K E K T A K X L S I P R D A Y V N I P G H G Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T T
S S
S S S S
T T T T
T T B T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K F T H A H A Y G G V D L T V K T V E E X L D I P V D Y V V E S N F T A F E D V V N E L N G V K V T V K S D K V I Q Q I K K D T K G K V V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q K G T H T L D G E E A L A Y V R T R K S D L L R G Q R Q X E V L S A I I D K S K S L D T X G Q N L K X N L S L K D A I G L F P F I T S L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
S S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 .

Sequence S V E S I Q L T G Y D Y E P A G V Y Y F K L N Q Q K L Q E V K K E L Q N D L G V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	V	S	L	A	R	G	E	Q	S	V	K	R	I	K	E	F	D	P	G	K	D	S	F	S	V	L	L	L	G	I	D	Q	A	R	S	D	A	N	V	L	V	T	F	N	R	K	E	K	T	A	K	X	L	S	I	P	R	D	A	Y	V	N	I	P	G	H	G	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S	S		T	T		S	S				S	S	S	S																								T	T	T	T									T	T	B					T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	F	T	H	A	H	A	Y	G	G	V	D	L	T	V	K	T	V	E	E	X	L	D	I	P	V	D	Y	V	V	E	S	N	F	T	A	F	E	D	V	V	N	E	L	N	G	V	K	V	T	V	K	S	D	K	V	I	Q	Q	I	K	K	D	T	K	G	K	V	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																					S																				T	T																			T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	K	G	T	H	T	L	D	G	E	E	A	L	A	Y	V	R	T	R	K	S	D	L	L	R	G	Q	R	Q	X	E	V	L	S	A	I	I	D	K	S	K	S	L	D	T	X	G	Q	N	L	K	X	N	L	S	L	K	D	A	I	G	L	F	P	F	I	T	S	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																						S																									S				S	S													T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Sequence	S	V	E	S	I	Q	L	T	G	Y	D	Y	E	P	A	G	V	Y	Y	F	K	L	N	Q	Q	K	L	Q	E	V	K	K	E	L	Q	N	D	L	G	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S																							T