PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qfiA_

Fold library id	PDB Header	Molecule	Title
c3qfiA_	PDB header: transcription regulator	Chain: A: PDB Molecule: transcriptional regulator;	PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190

Links to external resources
Added to library: Sat Mar 5 08:43:42 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T A N I D A Q E P F S V L L M G I D T G D D T T M V V T I N P K E N K S T M I S L D R D I L T D I V G N D T Q D K L N H A Y A F G G A E M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
G G G T
T T B T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I N T V Q E L L D I P I H H Y V S I N M K G L K D L I D A V G G I E V D N T I G E F T G I T V P A G K I K L D G T T G L A Y A R M R H E D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S S
S
S S
S S S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E G D V G R Q R R Q R E V V E K I V R K V M S F D Y R K I L D A V E A N V K T D L T W D D M M D I Q S K Y L S A F K T I D S E Q L Q G Y S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
T T G G G G G G G G S
T T T S T G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 .

Sequence T I D D I Y Y Q V L D P N S L Y K T Q T T L R K Q L G L K E H A S E R E K D L A F Y N Q F S Y A V T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T
T T G G G B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	A	N	I	D	A	Q	E	P	F	S	V	L	L	M	G	I	D	T	G	D	D	T	T	M	V	V	T	I	N	P	K	E	N	K	S	T	M	I	S	L	D	R	D	I	L	T	D	I	V	G	N	D	T	Q	D	K	L	N	H	A	Y	A	F	G	G	A	E	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	T																								G	G	G	T									T	T	B					T	T	T	T					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	N	T	V	Q	E	L	L	D	I	P	I	H	H	Y	V	S	I	N	M	K	G	L	K	D	L	I	D	A	V	G	G	I	E	V	D	N	T	I	G	E	F	T	G	I	T	V	P	A	G	K	I	K	L	D	G	T	T	G	L	A	Y	A	R	M	R	H	E	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S																				T	T							S	S										S							S								S		S	S	S	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	G	D	V	G	R	Q	R	R	Q	R	E	V	V	E	K	I	V	R	K	V	M	S	F	D	Y	R	K	I	L	D	A	V	E	A	N	V	K	T	D	L	T	W	D	D	M	M	D	I	Q	S	K	Y	L	S	A	F	K	T	I	D	S	E	Q	L	Q	G	Y	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																				T	S				T	T	G	G	G	G	G	G	G	G				S										T	T	T	S	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Sequence	T	I	D	D	I	Y	Y	Q	V	L	D	P	N	S	L	Y	K	T	Q	T	T	L	R	K	Q	L	G	L	K	E	H	A	S	E	R	E	K	D	L	A	F	Y	N	Q	F	S	Y	A	V	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S																						T	T																	T	T	G	G	G	B