PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3nxhA_

Fold library id	PDB Header	Molecule	Title
c3nxhA_	PDB header: transcription regulator	Chain: A: PDB Molecule: transcriptional regulator yvhj;	PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735.

Links to external resources
Added to library: Sun Aug 29 04:23:35 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X K K K P F S I L F X G I E D Y A T K G Q K G R S D S L I V V T L D P K N K T X K X L S I P R D T R V Q L A S K T K I N A A Y S K G G K D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S T T
S G G G T
T T B
S
T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T V E T V E N F L Q I P I D K Y V T V D F D G F K D V I N E V G G I D V D V P E X H L N G E E A L A Y A D F G R N D R Q K Q I L N A L I D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T
-
S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence X S D K I A E K A S E N V E T N I R I T E G L A L Q Q I Y S G F T S K K I D T L S I T G S D L Y L G P N N T Y Y F E P D A T N L E K V R K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
T T S S
S S
T T T T

. . . . . . . .

Sequence L Q E H L D Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	K	K	K	P	F	S	I	L	F	X	G	I	E	D	Y	A	T	K	G	Q	K	G	R	S	D	S	L	I	V	V	T	L	D	P	K	N	K	T	X	K	X	L	S	I	P	R	D	T	R	V	Q	L	A	S	K	T	K	I	N	A	A	Y	S	K	G	G	K	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S		S	S			S	T	T				S									G	G	G	T									T	T	B											S		T	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	V	E	T	V	E	N	F	L	Q	I	P	I	D	K	Y	V	T	V	D	F	D	G	F	K	D	V	I	N	E	V	G	G	I	D	V	D	V	P	E	X	H	L	N	G	E	E	A	L	A	Y	A	D	F	G	R	N	D	R	Q	K	Q	I	L	N	A	L	I	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S																					T					-																		S															T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	X	S	D	K	I	A	E	K	A	S	E	N	V	E	T	N	I	R	I	T	E	G	L	A	L	Q	Q	I	Y	S	G	F	T	S	K	K	I	D	T	L	S	I	T	G	S	D	L	Y	L	G	P	N	N	T	Y	Y	F	E	P	D	A	T	N	L	E	K	V	R	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										T	T	S																T	T	S	S		S	S															T	T	T	T
	.	.	.	.	.	.	.	.
Sequence	L	Q	E	H	L	D	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T