Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A086
DateTue Jul 17 17:05:04 BST 2012
Unique Job IDf9ccc26106a810f1

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bqhA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
Confidence and coverage
Confidence:100.0% Coverage: 90%
160 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTKEYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVDNPTYEQVCTNQTGHVEAVQIT
Secondary structure 
SS confidence 
Disorder  ????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  FDPEVTSFENILDIYFKTFDPTDDQGQFFDRGESYQPVIFYHDEHQKKAAEFKKQQLNEQ
Secondary structure 
SS confidence 
Disorder 
?????????????
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.......
Sequence  GIFKKPVITPIKPYKNFYPAEDYHQDYYKKNPVHYYQYQRGSGRKAFIESHWGNQNA
Secondary structure 
SS confidence 
Disorder  ???
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bqh chain A

3D model

Region: 2 - 163
Aligned: 160
Modelled: 162
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)

Phyre2

PDB 1fva chain A

3D model

Region: 2 - 161
Aligned: 160
Modelled: 160
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of bovine methionine sulfoxide reductase

Phyre2

PDB 2j89 chain A

3D model

Region: 2 - 163
Aligned: 159
Modelled: 162
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases

Phyre2

PDB 1nwa chain A

3D model

Region: 2 - 163
Aligned: 158
Modelled: 162
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine

Phyre2

PDB 1nwa chain A

3D model

Region: 2 - 163
Aligned: 158
Modelled: 162
Confidence: 100.0%
Identity: 39%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 1fvg chain A

3D model

Region: 2 - 156
Aligned: 155
Modelled: 155
Confidence: 100.0%
Identity: 35%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 3e0m chain B

3D model

Region: 4 - 161
Aligned: 154
Modelled: 158
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb

Phyre2

PDB 1ff3 chain A

3D model

Region: 2 - 161
Aligned: 159
Modelled: 160
Confidence: 100.0%
Identity: 35%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 3pil chain A

3D model

Region: 1 - 157
Aligned: 155
Modelled: 157
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form

Phyre2

PDB 1ff3 chain C

3D model

Region: 2 - 150
Aligned: 148
Modelled: 149
Confidence: 100.0%
Identity: 36%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 1yjr chain A

3D model

Region: 1 - 74
Aligned: 55
Modelled: 55
Confidence: 96.2%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein

Phyre2

PDB 1kvj chain A

3D model

Region: 1 - 74
Aligned: 55
Modelled: 55
Confidence: 95.9%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1cpz chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.8%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1q8l chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.7%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1afi chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.5%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2kkh chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.2%
Identity: 15%
PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4

Phyre2

PDB 1p6t chain A domain 1

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.2%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2ew9 chain A

3D model

Region: 1 - 74
Aligned: 55
Modelled: 55
Confidence: 95.1%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6

Phyre2

PDB 1s6u chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 94.9%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2ldi chain A

3D model

Region: 1 - 74
Aligned: 55
Modelled: 55
Confidence: 94.9%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: nmr solution structure of ziaan sub mutant

Phyre2
1
c3bqhA_
2
c1fvaA_
3
c2j89A_
4
c1nwaA_
5
d1nwaa_
6
d1fvga_
7
c3e0mB_
8
d1ff3a_
9
c3pilA_
10
d1ff3c_
11
c1yjrA_
12
d1kvja_
13
d1cpza_
14
d1q8la_
15
d1afia_
16
c2kkhA_
17
d1p6ta1
18
c2ew9A_
19
d1s6ua_
20
c2ldiA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
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44
45
46
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49
50
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53
54
55
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57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
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80
81
82
83
84
85
86
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95
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98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bqhA_
100.0 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
2c1fvaA_
100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of bovine methionine sulfoxide reductase
3c2j89A_
100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
4c1nwaA_
100.0 39 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
5d1nwaa_
100.0 39 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
6d1fvga_
100.0 35 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
7c3e0mB_
100.0 32 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
8d1ff3a_
100.0 35 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
9c3pilA_
100.0 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
10d1ff3c_
100.0 36 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
11c1yjrA_
96.2 24 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
12d1kvja_
95.9 15 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
13d1cpza_
95.8 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
14d1q8la_
95.7 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
15d1afia_
95.5 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
16c2kkhA_
95.2 15 PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
17d1p6ta1
95.2 24 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
18c2ew9A_
95.1 22 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6
19d1s6ua_
94.9 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
20c2ldiA_
94.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: nmr solution structure of ziaan sub mutant
21d2qifa1
not modelled 94.7 24 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
22d1p6ta2
not modelled 94.6 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
23c2ofhX_
not modelled 94.5 16 PDB header:hydrolase, membrane protein
Chain: X: PDB Molecule:zinc-transporting atpase;
PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
24c2ropA_
not modelled 94.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b
25d2aw0a_
not modelled 94.1 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
26c2ga7A_
not modelled 94.1 9 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein)
27c2l3mA_
not modelled 94.0 24 PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
28d1osda_
not modelled 93.6 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
29c2kt2A_
not modelled 93.5 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
30c3dxsX_
not modelled 93.4 20 PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
31c2rmlA_
not modelled 93.2 17 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa
32d2ggpb1
not modelled 93.0 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
33c3j09A_
not modelled 92.8 26 PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
34c1y3kA_
not modelled 91.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
35c1yg0A_
not modelled 89.2 16 PDB header:metal transport
Chain: A: PDB Molecule:cop associated protein;
PDBTitle: solution structure of apo-copp from helicobacter pylori
36d1mwza_
not modelled 88.7 14 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
37c2gcfA_
not modelled 86.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:cation-transporting atpase pacs;
PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
38c2aj1A_
not modelled 85.4 7 PDB header:hydrolase
Chain: A: PDB Molecule:probable cadmium-transporting atpase;
PDBTitle: solution structure of apocada
39d2phcb2
not modelled 83.7 24 Fold:DCoH-like
Superfamily:PH0987 N-terminal domain-like
Family:PH0987 N-terminal domain-like
40c2k2pA_
not modelled 73.1 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
41c2rogA_
not modelled 70.6 16 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
42c2phcB_
not modelled 68.1 24 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
43d1vsra_
not modelled 66.1 33 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
44c2f40A_
not modelled 62.5 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pf1455;
PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction
45c2kwaA_
not modelled 55.3 15 PDB header:transferase inhibitor
Chain: A: PDB Molecule:kinase a inhibitor;
PDBTitle: 1h, 13c and 15n backbone and side chain resonance assignments of the2 n-terminal domain of the histidine kinase inhibitor kipi from3 bacillus subtilis
46c3oepA_
not modelled 47.4 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
47d1qupa2
not modelled 41.2 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
48d1cw0a_
not modelled 40.3 33 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
49c2hgnA_
not modelled 39.9 15 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein f;
PDBTitle: nmr structure of the third qrrm domain of human hnrnp f
50d1h2vz_
not modelled 39.1 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
51d1sb6a_
not modelled 36.3 11 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
52d1fxla1
not modelled 35.1 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
53c2kyzA_
not modelled 35.0 20 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
54c3md1B_
not modelled 33.1 12 PDB header:rna binding protein
Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
55d2gz1a2
not modelled 30.8 30 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
56d2cqpa1
not modelled 28.4 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
57c3pgwS_
not modelled 28.1 5 PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp
58d1e3ha5
not modelled 27.8 25 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
59c3mmlD_
not modelled 26.2 14 PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
60d2cq3a1
not modelled 22.6 11 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
61c3fryB_
not modelled 20.2 15 PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
62c3f3mA_
not modelled 18.5 33 PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: six crystal structures of two phosphopantetheine adenylyltransferases2 reveal an alternative ligand binding mode and an associated3 structural change
63c2d9pA_
not modelled 18.2 9 PDB header:rna binding protein
Chain: A: PDB Molecule:polyadenylate-binding protein 3;
PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3
64d1t4ba2
not modelled 17.8 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
65c2divA_
not modelled 17.8 7 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein;
PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein
66d1pugb_
not modelled 17.2 24 Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
67c2dnmA_
not modelled 17.1 9 PDB header:rna binding protein
Chain: A: PDB Molecule:srp46 splicing factor;
PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor
68c3va7A_
not modelled 17.1 11 PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
69d1pqua2
not modelled 16.8 22 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
70c1jk9D_
not modelled 16.6 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
71d1x5ta1
not modelled 16.5 9 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
72d1hl6a_
not modelled 16.4 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
73d1fnxh1
not modelled 16.3 10 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
74d1udsa2
not modelled 15.8 14 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
75d2up1a2
not modelled 15.7 12 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
76d1whwa_
not modelled 15.4 11 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
77d1leha2
not modelled 14.7 17 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
78d1kgsa1
not modelled 14.7 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
79d1uala_
not modelled 14.6 25 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
80d1r6la2
not modelled 14.4 16 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
81c2crlA_
not modelled 14.3 16 PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase
82d1x4aa1
not modelled 14.1 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
83c2e5hA_
not modelled 13.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif-
PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1
84d1cc8a_
not modelled 13.7 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
85d1u7ka_
not modelled 12.8 26 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
86d2erra1
not modelled 12.8 12 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
87d1mb4a2
not modelled 12.7 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
88c2dgwA_
not modelled 12.6 12 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 19;
PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19
89c2wzvB_
not modelled 12.5 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
90d2je6b2
not modelled 12.5 16 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
91c1m6vE_
not modelled 12.4 21 PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
92c2f3jA_
not modelled 12.2 12 PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).
93d1a9xa4
not modelled 12.0 22 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
94d1sl8a_
not modelled 11.9 15 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
95c1qupA_
not modelled 11.6 19 PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase
96c3cw18_
not modelled 10.8 7 PDB header:splicing
Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;
PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
97c2x1aA_
not modelled 10.7 14 PDB header:transcription/rna
Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15;
PDBTitle: structure of rna15 rrm with rna bound (g)
98d1rk8a_
not modelled 10.1 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
99d2cqca1
not modelled 10.1 13 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

Binding site prediction 

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