Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A084
DateTue Jul 17 17:05:04 BST 2012
Unique Job IDff03cc090e036f4b

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bqhA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
Confidence and coverage
Confidence:100.0% Coverage: 92%
156 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNINTAYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHIENPTYEQVKSGTSGHLETVEIQ
Secondary structure 























SS confidence 



























































Disorder  ????
































?
????
















Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  YDVALFSYNKLLEIFFSVIDPLDTGGQYQDRGPQYQTAIFYTNDHQKELAETYIEQLKNT
Secondary structure 























SS confidence 



























































Disorder 





















???????????

























?
Disorder confidence 



























































 
   .........130.........140.........150.........160.........
Sequence  INADKAIATKILPASQFYKAEDYHQDFYKKNPERYAEEQKIRQEYKNKQ
Secondary structure 





















SS confidence 
















































Disorder  ???



























???????





?????
Disorder confidence 
















































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bqh chain A

3D model

Region: 2 - 159
Aligned: 156
Modelled: 158
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)

Phyre2

PDB 1fva chain A

3D model

Region: 2 - 159
Aligned: 158
Modelled: 158
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of bovine methionine sulfoxide reductase

Phyre2

PDB 1fvg chain A

3D model

Region: 2 - 156
Aligned: 155
Modelled: 155
Confidence: 100.0%
Identity: 34%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 3e0m chain B

3D model

Region: 3 - 159
Aligned: 153
Modelled: 157
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb

Phyre2

PDB 3pil chain A

3D model

Region: 1 - 163
Aligned: 161
Modelled: 163
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form

Phyre2

PDB 2j89 chain A

3D model

Region: 2 - 157
Aligned: 153
Modelled: 156
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases

Phyre2

PDB 1nwa chain A

3D model

Region: 2 - 157
Aligned: 152
Modelled: 156
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine

Phyre2

PDB 1nwa chain A

3D model

Region: 2 - 157
Aligned: 152
Modelled: 156
Confidence: 100.0%
Identity: 36%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 1ff3 chain A

3D model

Region: 2 - 159
Aligned: 157
Modelled: 158
Confidence: 100.0%
Identity: 37%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 1ff3 chain C

3D model

Region: 2 - 150
Aligned: 148
Modelled: 149
Confidence: 100.0%
Identity: 37%
Fold: Ferredoxin-like
Superfamily: Peptide methionine sulfoxide reductase
Family: Peptide methionine sulfoxide reductase

Phyre2

PDB 1kvj chain A

3D model

Region: 1 - 74
Aligned: 55
Modelled: 55
Confidence: 96.3%
Identity: 22%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1cpz chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.7%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1q8l chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.6%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1afi chain A

3D model

Region: 10 - 78
Aligned: 50
Modelled: 50
Confidence: 95.4%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1p6t chain A domain 1

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.1%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2kkh chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.0%
Identity: 15%
PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4

Phyre2

PDB 1yjr chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 95.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein

Phyre2

PDB 1s6u chain A

3D model

Region: 10 - 74
Aligned: 46
Modelled: 46
Confidence: 94.8%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2ofh chain X

3D model

Region: 3 - 75
Aligned: 54
Modelled: 54
Confidence: 94.8%
Identity: 13%
PDB header:hydrolase, membrane protein
Chain: X: PDB Molecule:zinc-transporting atpase;
PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form

Phyre2

PDB 1p6t chain A domain 2

3D model

Region: 10 - 75
Aligned: 47
Modelled: 47
Confidence: 94.7%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
1

c3bqhA_
2

c1fvaA_
3

d1fvga_
4

c3e0mB_
5

c3pilA_
6

c2j89A_
7

c1nwaA_
8

d1nwaa_
9

d1ff3a_
10

d1ff3c_
11

d1kvja_
12

d1cpza_
13

d1q8la_
14

d1afia_
15

d1p6ta1
16

c2kkhA_
17

c1yjrA_
18

d1s6ua_
19

c2ofhX_
20

d1p6ta2
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bqhA_



100.0 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
2c1fvaA_



100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of bovine methionine sulfoxide reductase
3d1fvga_



100.0 34 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
4c3e0mB_



100.0 34 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
5c3pilA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
6c2j89A_



100.0 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
7c1nwaA_



100.0 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
8d1nwaa_



100.0 36 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
9d1ff3a_



100.0 37 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
10d1ff3c_



100.0 37 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
11d1kvja_



96.3 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
12d1cpza_



95.7 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
13d1q8la_



95.6 15 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
14d1afia_



95.4 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
15d1p6ta1



95.1 26 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
16c2kkhA_



95.0 15 PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
17c1yjrA_



95.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
18d1s6ua_



94.8 15 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
19c2ofhX_



94.8 13 PDB header:hydrolase, membrane protein
Chain: X: PDB Molecule:zinc-transporting atpase;
PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
20d1p6ta2



94.7 23 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
21c2ldiA_



not modelled 94.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: nmr solution structure of ziaan sub mutant
22d2qifa1



not modelled 94.3 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
23c2ropA_



not modelled 94.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b
24d2aw0a_



not modelled 93.9 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
25c2ga7A_



not modelled 93.8 11 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein)
26c2l3mA_



not modelled 93.6 26 PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
27c2ew9A_



not modelled 93.5 15 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6
28c2kt2A_



not modelled 93.4 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
29d1osda_



not modelled 93.4 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
30c2rmlA_



not modelled 93.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa
31c3dxsX_



not modelled 93.0 15 PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
32c3j09A_



not modelled 93.0 17 PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
33d2ggpb1



not modelled 92.8 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
34c1y3kA_



not modelled 91.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
35c1yg0A_



not modelled 88.8 18 PDB header:metal transport
Chain: A: PDB Molecule:cop associated protein;
PDBTitle: solution structure of apo-copp from helicobacter pylori
36d1mwza_



not modelled 88.8 11 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
37c2gcfA_



not modelled 86.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:cation-transporting atpase pacs;
PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
38d2phcb2



not modelled 86.0 21 Fold:DCoH-like
Superfamily:PH0987 N-terminal domain-like
Family:PH0987 N-terminal domain-like
39c2aj1A_



not modelled 85.8 9 PDB header:hydrolase
Chain: A: PDB Molecule:probable cadmium-transporting atpase;
PDBTitle: solution structure of apocada
40c2k2pA_



not modelled 72.4 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
41c2rogA_



not modelled 71.4 22 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
42c2phcB_



not modelled 68.0 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
43c2kwaA_



not modelled 61.9 17 PDB header:transferase inhibitor
Chain: A: PDB Molecule:kinase a inhibitor;
PDBTitle: 1h, 13c and 15n backbone and side chain resonance assignments of the2 n-terminal domain of the histidine kinase inhibitor kipi from3 bacillus subtilis
44d1vsra_



not modelled 58.9 42 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
45c2f40A_



not modelled 56.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pf1455;
PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction
46c3oepA_



not modelled 50.2 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
47d1qupa2



not modelled 43.3 11 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
48d1sb6a_



not modelled 39.1 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
49c2kyzA_



not modelled 35.4 17 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
50d1cw0a_



not modelled 32.7 42 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
51c1jk9D_



not modelled 29.2 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
52d2gz1a2



not modelled 27.6 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
53d1e3ha5



not modelled 25.9 24 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
54c3mmlD_



not modelled 24.6 15 PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
55c3md1B_



not modelled 22.5 7 PDB header:rna binding protein
Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
56c3fryB_



not modelled 22.1 12 PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
57d2cqpa1



not modelled 19.2 11 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
58d1fxla1



not modelled 19.0 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
59d1h2vz_



not modelled 17.2 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
60d1t4ba2



not modelled 17.0 17 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
61d2b0ja2



not modelled 17.0 27 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
62c3pgwS_



not modelled 16.7 7 PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp
63d1pugb_



not modelled 16.4 18 Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
64d1pqua2



not modelled 15.1 9 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
65d1cc8a_



not modelled 15.0 15 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
66d1r6la2



not modelled 14.8 22 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
67d1tzfa_



not modelled 14.5 36 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
68d1udsa2



not modelled 13.4 20 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
69c1qupA_



not modelled 13.2 11 PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase
70c3f46A_



not modelled 12.1 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase;
PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii
71d1fe0a_



not modelled 11.4 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
72c2crlA_



not modelled 11.3 13 PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase
73d1leha2



not modelled 10.9 17 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
74d1mb4a2



not modelled 10.7 13 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
75c2wqfA_



not modelled 10.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:copper induced nitroreductase d;
PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn
76d2je6b2



not modelled 10.4 19 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
77d1vqoa2



not modelled 10.4 36 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
78c2divA_



not modelled 10.3 12 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein;
PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein
79c2dnmA_



not modelled 10.0 9 PDB header:rna binding protein
Chain: A: PDB Molecule:srp46 splicing factor;
PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor
80c2wzvB_



not modelled 9.7 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
81d1uala_



not modelled 9.6 17 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
82d1sl8a_



not modelled 9.3 14 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
83d1vjea_



not modelled 9.2 21 Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
84d2cq3a1



not modelled 8.9 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
85c2e5hA_



not modelled 8.7 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif-
PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1
86c3va7A_



not modelled 8.6 11 PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
87d2br2b2



not modelled 8.4 20 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
88d1whwa_



not modelled 8.4 12 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
89d2zjra2



not modelled 8.2 21 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
90d1rl2a2



not modelled 8.1 21 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
91d1ywqa1



not modelled 8.1 10 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
92d1bcoa1



not modelled 7.6 20 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
93c2d9pA_



not modelled 7.5 10 PDB header:rna binding protein
Chain: A: PDB Molecule:polyadenylate-binding protein 3;
PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3
94d2fura1



not modelled 7.5 14 Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
95d1x5ta1



not modelled 7.4 13 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
96c3eo8A_



not modelled 7.3 13 PDB header:flavoprotein
Chain: A: PDB Molecule:blub-like flavoprotein;
PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution
97c2b7lD_



not modelled 7.2 10 PDB header:transferase
Chain: D: PDB Molecule:glycerol-3-phosphate cytidylyltransferase;
PDBTitle: crystal structure of ctp:glycerol-3-phosphate2 cytidylyltransferase from staphylococcus aureus
98d2ghpa3



not modelled 7.1 13 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
99d1hl6a_



not modelled 7.1 10 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite