Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1A546
DateWed Jul 10 14:42:12 BST 2013
Unique Job ID662cb7bcad34e871
SequenceMAGPTIHRDM ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.667 Y:30.843 Z:38.194
Model (left) based on template c2dmtA_
Top template information
PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein barh-like 1;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
Confidence and coverage
Confidence: 99.9% Coverage: 33%
79 residues ( 33% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 74% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAGPTIHRDMEKSSGYCEAPENLGLSFSIEAILKKPTERRSLPRPQSICKEDSRQTTIPG
Secondary structure 
SS confidence 
Disorder  ???
???????????????????????????????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SKLERPPQDQPQEEKKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEA
Secondary structure 
SS confidence 
Disorder  ???????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RVQIWFQNQRAKWRKQEKSGNLSAPQQPGEAGLALPSNMDVSGPVLTPTAMTTLVPPTEC
Secondary structure 
SS confidence 
Disorder 
????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  CLLSQTQLPSSWFPTQIPLVPWHPWDLQPLPGPLTQHPCVPTFMFPPLHPKWGSICATST
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
  
Sequence 
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 74%)
Alpha helix ( 27%)
Beta strand ( 0%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2dmt chain A

3D model

Region: 62 - 140
Aligned: 79
Modelled: 79
Confidence: 99.9%
Identity: 35%
PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein barh-like 1;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1

Phyre2

PDB 2kt0 chain A

3D model

Region: 57 - 140
Aligned: 84
Modelled: 84
Confidence: 99.9%
Identity: 26%
PDB header:transcription regulation
Chain: A: PDB Molecule:homeobox protein nanog;
PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment

Phyre2

PDB 1puf chain A

3D model

Region: 69 - 139
Aligned: 71
Modelled: 71
Confidence: 99.9%
Identity: 37%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 2m34 chain A

3D model

Region: 72 - 140
Aligned: 69
Modelled: 69
Confidence: 99.9%
Identity: 46%
PDB header:transcription
Chain: A: PDB Molecule:homeobox protein gbx-1;
PDBTitle: nmr structure of the homeodomain transcription factor gbx1 from homo2 sapiens

Phyre2

PDB 2dms chain A

3D model

Region: 72 - 150
Aligned: 79
Modelled: 79
Confidence: 99.9%
Identity: 47%
PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein otx2;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2

Phyre2

PDB 1zq3 chain P domain 1

3D model

Region: 78 - 144
Aligned: 67
Modelled: 67
Confidence: 99.9%
Identity: 34%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 1nk3 chain P

3D model

Region: 77 - 139
Aligned: 63
Modelled: 63
Confidence: 99.8%
Identity: 40%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 3a01 chain A

3D model

Region: 65 - 140
Aligned: 76
Modelled: 76
Confidence: 99.8%
Identity: 36%
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeodomain-containing protein;
PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna

Phyre2

PDB 1b72 chain A

3D model

Region: 77 - 139
Aligned: 63
Modelled: 63
Confidence: 99.8%
Identity: 46%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 1ahd chain P

3D model

Region: 78 - 144
Aligned: 67
Modelled: 67
Confidence: 99.8%
Identity: 40%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 2dmu chain A

3D model

Region: 72 - 140
Aligned: 69
Modelled: 69
Confidence: 99.8%
Identity: 48%
PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein goosecoid;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid

Phyre2

PDB 1fjl chain A

3D model

Region: 77 - 139
Aligned: 63
Modelled: 63
Confidence: 99.8%
Identity: 59%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 2djn chain A

3D model

Region: 72 - 140
Aligned: 69
Modelled: 69
Confidence: 99.8%
Identity: 33%
PDB header:transcription
Chain: A: PDB Molecule:homeobox protein dlx-5;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5

Phyre2

PDB 2dmq chain A

3D model

Region: 72 - 150
Aligned: 79
Modelled: 79
Confidence: 99.8%
Identity: 30%
PDB header:dna binding protein
Chain: A: PDB Molecule:lim/homeobox protein lhx9;
PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9

Phyre2

PDB 1ftz chain A

3D model

Region: 77 - 141
Aligned: 65
Modelled: 65
Confidence: 99.8%
Identity: 38%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 2lfb chain A

3D model

Region: 73 - 140
Aligned: 68
Modelled: 68
Confidence: 99.8%
Identity: 28%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 1b8i chain A

3D model

Region: 78 - 136
Aligned: 59
Modelled: 59
Confidence: 99.8%
Identity: 41%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 1ftt chain A

3D model

Region: 78 - 143
Aligned: 66
Modelled: 66
Confidence: 99.8%
Identity: 38%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Homeodomain

Phyre2

PDB 2da3 chain A

3D model

Region: 62 - 140
Aligned: 79
Modelled: 79
Confidence: 99.8%
Identity: 32%
PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)

Phyre2

PDB 2m0c chain A

3D model

Region: 73 - 143
Aligned: 71
Modelled: 71
Confidence: 99.8%
Identity: 62%
PDB header:gene regulation
Chain: A: PDB Molecule:homeobox protein aristaless-like 4;
PDBTitle: solution nmr structure of homeobox domain of human alx4, northeast2 structural genomics consortium (nesg) target hr4490c

Phyre2

PDB 2l3k chain A

3D model

Region: 49 - 90
Aligned: 42
Modelled: 42
Confidence: 61.0%
Identity: 12%
PDB header:oncoprotein
Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1;
PDBTitle: solution structure of lmo2(lim2)-ldb1(lid)

Phyre2
1
c2dmtA_
2
c2kt0A_
3
d1pufa_
4
c2m34A_
5
c2dmsA_
6
d1zq3p1
7
d1nk3p_
8
c3a01A_
9
d1b72a_
10
d1ahdp_
11
c2dmuA_
12
d1fjla_
13
c2djnA_
14
c2dmqA_
15
d1ftza_
16
d2lfba_
17
d1b8ia_
18
d1ftta_
19
c2da3A_
20
c2m0cA_
21
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c2l3kA_
133
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2dmtA_
99.9 35 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein barh-like 1;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
2c2kt0A_
99.9 26 PDB header:transcription regulation
Chain: A: PDB Molecule:homeobox protein nanog;
PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
3d1pufa_
99.9 37 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
4c2m34A_
99.9 46 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein gbx-1;
PDBTitle: nmr structure of the homeodomain transcription factor gbx1 from homo2 sapiens
5c2dmsA_
99.9 47 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein otx2;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2
6d1zq3p1
99.9 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
7d1nk3p_
99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
8c3a01A_
99.8 36 PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeodomain-containing protein;
PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna
9d1b72a_
99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
10d1ahdp_
99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
11c2dmuA_
99.8 48 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein goosecoid;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid
12d1fjla_
99.8 59 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
13c2djnA_
99.8 33 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein dlx-5;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5
14c2dmqA_
99.8 30 PDB header:dna binding protein
Chain: A: PDB Molecule:lim/homeobox protein lhx9;
PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9
15d1ftza_
99.8 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
16d2lfba_
99.8 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
17d1b8ia_
99.8 41 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
18d1ftta_
99.8 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
19c2da3A_
99.8 32 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)
20c2m0cA_
99.8 62 PDB header:gene regulation
Chain: A: PDB Molecule:homeobox protein aristaless-like 4;
PDBTitle: solution nmr structure of homeobox domain of human alx4, northeast2 structural genomics consortium (nesg) target hr4490c
21d2cufa1
not modelled 99.8 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
22c2l9rA_
not modelled 99.8 31 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein nkx-3.1;
PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a
23d1ig7a_
not modelled 99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
24d1jgga_
not modelled 99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
25d1uhsa_
not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
26d2e1oa1
not modelled 99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
27d2cuea1
not modelled 99.8 59 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
28d1vnda_
not modelled 99.8 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
29d2craa1
not modelled 99.8 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
30c2k40A_
not modelled 99.8 41 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox expressed in es cells 1;
PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l
31d1fjlb_
not modelled 99.8 60 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
32d2hddb_
not modelled 99.8 43 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
33c2da2A_
not modelled 99.8 36 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1)
34c3d1nK_
not modelled 99.8 27 PDB header:transcription regulator/dna
Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1;
PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter
35d1bw5a_
not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
36c2da1A_
not modelled 99.8 26 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1)
37d9anta_
not modelled 99.8 45 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
38d1octc1
not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
39d1yz8p1
not modelled 99.8 55 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
40c2vi6F_
not modelled 99.8 35 PDB header:transcription
Chain: F: PDB Molecule:homeobox protein nanog;
PDBTitle: crystal structure of the nanog homeodomain
41d1ztra1
not modelled 99.8 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
42d1gt0c1
not modelled 99.8 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
43d1sana_
not modelled 99.8 41 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
44d1wh5a_
not modelled 99.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
45d1hdpa_
not modelled 99.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
46c3l1pA_
not modelled 99.8 23 PDB header:transcription/dna
Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1;
PDBTitle: pou protein:dna complex
47c3a03A_
not modelled 99.8 40 PDB header:gene regulation
Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2;
PDBTitle: crystal structure of hox11l1 homeodomain
48d1ocpa_
not modelled 99.8 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
49c2ly9A_
not modelled 99.8 21 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: solution nmr structure of homeobox 2 domain from human zhx1 repressor,2 northeast structural genomics consortium (nesg) target hr7907f
50c2dn0A_
not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3
51d1p7ia_
not modelled 99.8 47 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
52d1du0a_
not modelled 99.8 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
53d1e3oc1
not modelled 99.8 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
54d2hi3a1
not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
55c1hf0A_
not modelled 99.8 28 PDB header:transcription
Chain: A: PDB Molecule:octamer-binding transcription factor 1;
PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer
56d1au7a1
not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
57c2da4A_
not modelled 99.8 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156;
PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
58d1le8a_
not modelled 99.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
59d1mh3a1
not modelled 99.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
60d1f43a_
not modelled 99.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
61c2dmnA_
not modelled 99.8 18 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif2lx;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
62d2ecca1
not modelled 99.7 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
63c1ic8B_
not modelled 99.7 26 PDB header:transcription/dna
Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product
64c2h8rA_
not modelled 99.7 30 PDB header:transcription activator/dna
Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta;
PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
65c1au7B_
not modelled 99.7 25 PDB header:transcription/dna
Chain: B: PDB Molecule:protein pit-1;
PDBTitle: pit-1 mutant/dna complex
66c2da5A_
not modelled 99.7 19 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
67c2dmpA_
not modelled 99.7 15 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2
68d2ecba1
not modelled 99.7 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
69c2da7A_
not modelled 99.7 14 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger homeobox protein 1b;
PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
70d1lfup_
not modelled 99.7 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
71d1p7jb_
not modelled 99.7 43 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
72c1s7eA_
not modelled 99.7 20 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 6;
PDBTitle: solution structure of hnf-6
73d1pufb_
not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
74c1x2mA_
not modelled 99.7 24 PDB header:transcription
Chain: A: PDB Molecule:lag1 longevity assurance homolog 6;
PDBTitle: solution structure of the homeobox domain of mouse lag12 longevity assurance homolog 6
75c3narA_
not modelled 99.7 27 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4)
76d1mnmc_
not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
77d1s7ea1
not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
78c2xsdC_
not modelled 99.7 25 PDB header:transcription/dna
Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1;
PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna
79c3nauA_
not modelled 99.7 24 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
80d1le8b_
not modelled 99.7 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
81d1lfba_
not modelled 99.7 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
82d1yrnb_
not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
83d1o4xa1
not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
84c2e19A_
not modelled 99.7 22 PDB header:transcription
Chain: A: PDB Molecule:transcription factor 8;
PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8
85c2lk2A_
not modelled 99.7 18 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif1;
PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
86d1akha_
not modelled 99.7 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
87d1x2na1
not modelled 99.7 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
88d1du6a_
not modelled 99.6 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
89d2cqxa1
not modelled 99.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
90d2r5yb1
not modelled 99.6 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
91d1x2ma1
not modelled 99.6 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
92d1k61a_
not modelled 99.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
93d2p81a1
not modelled 99.5 43 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
94c4egcA_
not modelled 99.2 24 PDB header:transcription/hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
95c2nzzA_
not modelled 97.9 53 PDB header:membrane protein
Chain: A: PDB Molecule:penetratin conjugated gas (374-394) peptide;
PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide
96d1wh7a_
not modelled 97.5 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
97c1mh3A_
not modelled 97.3 18 PDB header:sugar binding, dna binding protein
Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera;
PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i
98d1wi3a_
not modelled 97.3 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
99c2elhA_
not modelled 91.1 19 PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
100c2ys9A_
not modelled 87.5 23 PDB header:transcription
Chain: A: PDB Molecule:homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
101d1hlva1
not modelled 86.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
102c3bdnB_
not modelled 86.8 16 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
103c1hlvA_
not modelled 85.9 15 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
104d1smyf2
not modelled 85.8 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
105d1rp3a2
not modelled 85.0 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
106c2ktgA_
not modelled 84.2 15 PDB header:ca-binding protein
Chain: A: PDB Molecule:calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
107d1avsa_
not modelled 83.4 12 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
108c3vdoA_
not modelled 81.3 13 PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
109c1or7A_
not modelled 80.2 14 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
110c2pmyB_
not modelled 78.2 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ras and ef-hand domain-containing protein;
PDBTitle: ef-hand domain of human rasef
111d1rioa_
not modelled 77.5 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
112d1sw8a_
not modelled 77.2 21 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
113c3hugA_
not modelled 74.0 13 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
114c3mzyA_
not modelled 73.6 15 PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
115d1or7a1
not modelled 72.5 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
116c2kgrA_
not modelled 72.2 11 PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a
117d1l3la1
not modelled 70.3 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
118c4if4A_
not modelled 70.0 14 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
119c2lfwA_
not modelled 69.1 17 PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
120c2o8xA_
not modelled 67.1 12 PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc

Binding site prediction 

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