1 c2dmtA_
99.9
35
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox protein barh-like 1;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
2 c2kt0A_
99.9
26
PDB header: transcription regulationChain: A: PDB Molecule: homeobox protein nanog;
PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
3 d1pufa_
99.9
37
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
4 c2m34A_
99.9
46
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein gbx-1;
PDBTitle: nmr structure of the homeodomain transcription factor gbx1 from homo2 sapiens
5 c2dmsA_
99.9
47
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox protein otx2;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2
6 d1zq3p1
99.9
34
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
7 d1nk3p_
99.8
40
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
8 c3a01A_
99.8
36
PDB header: gene regulation/dnaChain: A: PDB Molecule: homeodomain-containing protein;
PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna
9 d1b72a_
99.8
46
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
10 d1ahdp_
99.8
40
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
11 c2dmuA_
99.8
48
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox protein goosecoid;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid
12 d1fjla_
99.8
59
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
13 c2djnA_
99.8
33
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein dlx-5;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5
14 c2dmqA_
99.8
30
PDB header: dna binding proteinChain: A: PDB Molecule: lim/homeobox protein lhx9;
PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9
15 d1ftza_
99.8
38
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
16 d2lfba_
99.8
28
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
17 d1b8ia_
99.8
41
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
18 d1ftta_
99.8
38
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
19 c2da3A_
99.8
32
PDB header: transcriptionChain: A: PDB Molecule: alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)
20 c2m0cA_
99.8
62
PDB header: gene regulationChain: A: PDB Molecule: homeobox protein aristaless-like 4;
PDBTitle: solution nmr structure of homeobox domain of human alx4, northeast2 structural genomics consortium (nesg) target hr4490c
21 d2cufa1
not modelled
99.8
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
22 c2l9rA_
not modelled
99.8
31
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein nkx-3.1;
PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a
23 d1ig7a_
not modelled
99.8
46
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
24 d1jgga_
not modelled
99.8
46
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
25 d1uhsa_
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
26 d2e1oa1
not modelled
99.8
40
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
27 d2cuea1
not modelled
99.8
59
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
28 d1vnda_
not modelled
99.8
33
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
29 d2craa1
not modelled
99.8
32
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
30 c2k40A_
not modelled
99.8
41
PDB header: dna binding proteinChain: A: PDB Molecule: homeobox expressed in es cells 1;
PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l
31 d1fjlb_
not modelled
99.8
60
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
32 d2hddb_
not modelled
99.8
43
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
33 c2da2A_
not modelled
99.8
36
PDB header: transcriptionChain: A: PDB Molecule: alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1)
34 c3d1nK_
not modelled
99.8
27
PDB header: transcription regulator/dnaChain: K: PDB Molecule: pou domain, class 6, transcription factor 1;
PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter
35 d1bw5a_
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
36 c2da1A_
not modelled
99.8
26
PDB header: transcriptionChain: A: PDB Molecule: alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1)
37 d9anta_
not modelled
99.8
45
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
38 d1octc1
not modelled
99.8
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
39 d1yz8p1
not modelled
99.8
55
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
40 c2vi6F_
not modelled
99.8
35
PDB header: transcriptionChain: F: PDB Molecule: homeobox protein nanog;
PDBTitle: crystal structure of the nanog homeodomain
41 d1ztra1
not modelled
99.8
42
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
42 d1gt0c1
not modelled
99.8
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
43 d1sana_
not modelled
99.8
41
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
44 d1wh5a_
not modelled
99.8
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
45 d1hdpa_
not modelled
99.8
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
46 c3l1pA_
not modelled
99.8
23
PDB header: transcription/dnaChain: A: PDB Molecule: pou domain, class 5, transcription factor 1;
PDBTitle: pou protein:dna complex
47 c3a03A_
not modelled
99.8
40
PDB header: gene regulationChain: A: PDB Molecule: t-cell leukemia homeobox protein 2;
PDBTitle: crystal structure of hox11l1 homeodomain
48 d1ocpa_
not modelled
99.8
25
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
49 c2ly9A_
not modelled
99.8
21
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 1;
PDBTitle: solution nmr structure of homeobox 2 domain from human zhx1 repressor,2 northeast structural genomics consortium (nesg) target hr7907f
50 c2dn0A_
not modelled
99.8
20
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3
51 d1p7ia_
not modelled
99.8
47
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
52 d1du0a_
not modelled
99.8
42
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
53 d1e3oc1
not modelled
99.8
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
54 d2hi3a1
not modelled
99.8
30
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
55 c1hf0A_
not modelled
99.8
28
PDB header: transcriptionChain: A: PDB Molecule: octamer-binding transcription factor 1;
PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer
56 d1au7a1
not modelled
99.8
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
57 c2da4A_
not modelled
99.8
21
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: hypothetical protein dkfzp686k21156;
PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
58 d1le8a_
not modelled
99.8
17
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
59 d1mh3a1
not modelled
99.8
17
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
60 d1f43a_
not modelled
99.8
17
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
61 c2dmnA_
not modelled
99.8
18
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein tgif2lx;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
62 d2ecca1
not modelled
99.7
18
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
63 c1ic8B_
not modelled
99.7
26
PDB header: transcription/dnaChain: B: PDB Molecule: hepatocyte nuclear factor 1-alpha;
PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product
64 c2h8rA_
not modelled
99.7
30
PDB header: transcription activator/dnaChain: A: PDB Molecule: hepatocyte nuclear factor 1-beta;
PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
65 c1au7B_
not modelled
99.7
25
PDB header: transcription/dnaChain: B: PDB Molecule: protein pit-1;
PDBTitle: pit-1 mutant/dna complex
66 c2da5A_
not modelled
99.7
19
PDB header: dna binding proteinChain: A: PDB Molecule: zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
67 c2dmpA_
not modelled
99.7
15
PDB header: dna binding proteinChain: A: PDB Molecule: zinc fingers and homeoboxes protein 2;
PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2
68 d2ecba1
not modelled
99.7
15
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
69 c2da7A_
not modelled
99.7
14
PDB header: dna binding proteinChain: A: PDB Molecule: zinc finger homeobox protein 1b;
PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
70 d1lfup_
not modelled
99.7
28
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
71 d1p7jb_
not modelled
99.7
43
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
72 c1s7eA_
not modelled
99.7
20
PDB header: transcriptionChain: A: PDB Molecule: hepatocyte nuclear factor 6;
PDBTitle: solution structure of hnf-6
73 d1pufb_
not modelled
99.7
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
74 c1x2mA_
not modelled
99.7
24
PDB header: transcriptionChain: A: PDB Molecule: lag1 longevity assurance homolog 6;
PDBTitle: solution structure of the homeobox domain of mouse lag12 longevity assurance homolog 6
75 c3narA_
not modelled
99.7
27
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 1;
PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4)
76 d1mnmc_
not modelled
99.7
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
77 d1s7ea1
not modelled
99.7
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
78 c2xsdC_
not modelled
99.7
25
PDB header: transcription/dnaChain: C: PDB Molecule: pou domain, class 3, transcription factor 1;
PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna
79 c3nauA_
not modelled
99.7
24
PDB header: transcriptionChain: A: PDB Molecule: zinc fingers and homeoboxes protein 2;
PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
80 d1le8b_
not modelled
99.7
29
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
81 d1lfba_
not modelled
99.7
27
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
82 d1yrnb_
not modelled
99.7
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
83 d1o4xa1
not modelled
99.7
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
84 c2e19A_
not modelled
99.7
22
PDB header: transcriptionChain: A: PDB Molecule: transcription factor 8;
PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8
85 c2lk2A_
not modelled
99.7
18
PDB header: transcriptionChain: A: PDB Molecule: homeobox protein tgif1;
PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
86 d1akha_
not modelled
99.7
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
87 d1x2na1
not modelled
99.7
22
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
88 d1du6a_
not modelled
99.6
20
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
89 d2cqxa1
not modelled
99.6
25
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
90 d2r5yb1
not modelled
99.6
28
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
91 d1x2ma1
not modelled
99.6
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
92 d1k61a_
not modelled
99.6
25
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
93 d2p81a1
not modelled
99.5
43
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
94 c4egcA_
not modelled
99.2
24
PDB header: transcription/hydrolaseChain: A: PDB Molecule: maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
95 c2nzzA_
not modelled
97.9
53
PDB header: membrane proteinChain: A: PDB Molecule: penetratin conjugated gas (374-394) peptide;
PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide
96 d1wh7a_
not modelled
97.5
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
97 c1mh3A_
not modelled
97.3
18
PDB header: sugar binding, dna binding proteinChain: A: PDB Molecule: maltose binding-a1 homeodomain protein chimera;
PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i
98 d1wi3a_
not modelled
97.3
31
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Homeodomain
99 c2elhA_
not modelled
91.1
19
PDB header: dna binding proteinChain: A: PDB Molecule: cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
100 c2ys9A_
not modelled
87.5
23
PDB header: transcriptionChain: A: PDB Molecule: homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
101 d1hlva1
not modelled
86.8
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Centromere-binding
102 c3bdnB_
not modelled
86.8
16
PDB header: transcription/dnaChain: B: PDB Molecule: lambda repressor;
PDBTitle: crystal structure of the lambda repressor
103 c1hlvA_
not modelled
85.9
15
PDB header: dna binding protein/dnaChain: A: PDB Molecule: major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
104 d1smyf2
not modelled
85.8
8
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain
105 d1rp3a2
not modelled
85.0
11
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain
106 c2ktgA_
not modelled
84.2
15
PDB header: ca-binding proteinChain: A: PDB Molecule: calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
107 d1avsa_
not modelled
83.4
12
Fold: EF Hand-likeSuperfamily: EF-handFamily: Calmodulin-like
108 c3vdoA_
not modelled
81.3
13
PDB header: dna binding protein/protein bindingChain: A: PDB Molecule: rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
109 c1or7A_
not modelled
80.2
14
PDB header: transcriptionChain: A: PDB Molecule: rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
110 c2pmyB_
not modelled
78.2
19
PDB header: structural genomics, unknown functionChain: B: PDB Molecule: ras and ef-hand domain-containing protein;
PDBTitle: ef-hand domain of human rasef
111 d1rioa_
not modelled
77.5
16
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: Phage repressors
112 d1sw8a_
not modelled
77.2
21
Fold: EF Hand-likeSuperfamily: EF-handFamily: Calmodulin-like
113 c3hugA_
not modelled
74.0
13
PDB header: transcription/membrane proteinChain: A: PDB Molecule: rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
114 c3mzyA_
not modelled
73.6
15
PDB header: rna binding proteinChain: A: PDB Molecule: rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
115 d1or7a1
not modelled
72.5
9
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain
116 c2kgrA_
not modelled
72.2
11
PDB header: protein bindingChain: A: PDB Molecule: intersectin-1;
PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a
117 d1l3la1
not modelled
70.3
7
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: C-terminal effector domain of the bipartite response regulatorsFamily: GerE-like (LuxR/UhpA family of transcriptional regulators)
118 c4if4A_
not modelled
70.0
14
PDB header: transcriptionChain: A: PDB Molecule: response regulator protein vrar;
PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
119 c2lfwA_
not modelled
69.1
17
PDB header: signaling proteinChain: A: PDB Molecule: phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
120 c2o8xA_
not modelled
67.1
12
PDB header: transcriptionChain: A: PDB Molecule: probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc