PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4if4A_

Fold library id	PDB Header	Molecule	Title
c4if4A_	PDB header: transcription	Chain: A: PDB Molecule: response regulator protein vrar;	PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus

Links to external resources
Added to library: Sat May 11 09:21:36 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T I K V L F V D D H E M V R I G I S S Y L S T Q S D I E V V G E G A S G K E A I A K A H E L K P D L I L M D L L M E D M D G V E A T T Q I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S S
S
S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K D L P Q I K V L M L T S F I E D K E V Y R A L D A G V D S Y I L K T T S A K D I A D A V R K T S R G E S V F E P E V L V K M R N R M K K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T
S T T S
T T
B
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . .

Sequence A E L Y E M L T E R E M E I L L L I A K G Y S N Q E I A S A S H I T I K T V K T H V S N I L S K L E V Q D R T Q A V I Y A F Q H N L I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S
T T T
T
T T
S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	I	K	V	L	F	V	D	D	H	E	M	V	R	I	G	I	S	S	Y	L	S	T	Q	S	D	I	E	V	V	G	E	G	A	S	G	K	E	A	I	A	K	A	H	E	L	K	P	D	L	I	L	M	D	L	L	M	E	D	M	D	G	V	E	A	T	T	Q	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S													T	T		T	T								S	S														S						S			S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	D	L	P	Q	I	K	V	L	M	L	T	S	F	I	E	D	K	E	V	Y	R	A	L	D	A	G	V	D	S	Y	I	L	K	T	T	S	A	K	D	I	A	D	A	V	R	K	T	S	R	G	E	S	V	F	E	P	E	V	L	V	K	M	R	N	R	M	K	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S							S														T		S					T	T	S														T	T				B														T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Sequence	A	E	L	Y	E	M	L	T	E	R	E	M	E	I	L	L	L	I	A	K	G	Y	S	N	Q	E	I	A	S	A	S	H	I	T	I	K	T	V	K	T	H	V	S	N	I	L	S	K	L	E	V	Q	D	R	T	Q	A	V	I	Y	A	F	Q	H	N	L	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	S												T	T	T											T																	T	T		S	S											T	T