 |
Job Description | A1A546 | Confidence | 21.81% | Date | Wed Jul 10 14:42:12 BST 2013 |
Rank | 282 | Aligned Residues | 58 |
% Identity | 16% | Template | d2p7vb1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | 2.60 |
|
 |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | F | T | T | E | Q | L | Q | E | L | E | K | L | F | H | F | T | H | Y | P | D | I | H | V | R | S | Q | L | A | S | R | I | N | L | P | E | A | R | V | Q | I | W | F | Q | N | Q | R | A | K | W | R | K | Q | E | K | S | G | N | L |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|
|   |
|
|   |
|
|
|
|
|   |   |   |   |   |   |
| . |   |   |
|
|
|   |   |
|
|
|
|   |   |   |
|
|
|   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |
|
Template Sequence |   |
G | L | T | A | R | E | A | K | V | L | R | M | R | F | G | I | D | M | N | T | D | Y | T | . |
L | E | E | V | G | K | Q | F | D | V | T | R | E | R | I | R | Q | I | E | A | K | A | L | R | K | L | R | H | P | S | R | S | E | V | L |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | T | S | S | S |
|
|
| . |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | S |
|
| G | G | G | G | G |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | |
. | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|