Return to main results Retrieve Phyre Job Id

Job DescriptionA1A546
Confidence85.77%DateWed Jul 10 14:42:12 BST 2013
Rank104Aligned Residues52
% Identity8%Templated1smyf2
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   84.....90.........100.........110.........120.........130.........140.
Predicted Secondary structure 













Query SS confidence 

























































Query Sequence  TFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKSGN
Query Conservation    
  
   
   
     
       

    
    
  



 
 
         
Alig confidence 


















......
































Template Conservation   
   

 

 
     
 ...... 


  



   
     


 


       
Template Sequence  KLSEREAMVLKLRKGLIDG. . . . . . EEVGAFFGVTRERIRQIENKALRKLKYHESRTR
Template Known Secondary structure  TS
TT

......

TTTSSSS
TT
Template Predicted Secondary structure 






......


Template SS confidence 

























































   360.........370........ .380.........390.........400.........410.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D