Return to main results Retrieve Phyre Job Id

Job DescriptionA1A546
Confidence64.66%DateWed Jul 10 14:42:12 BST 2013
Rank126Aligned Residues49
% Identity8%Templatec3vepA_
PDB info PDB header:membrane protein/transcriptionChain: A: PDB Molecule:probable rna polymerase sigma-d factor; PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   88.90.........100.........110.........120.........130......
Predicted Secondary structure 








Query SS confidence 
















































Query Sequence  EQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQ
Query Conservation   
   
   
     
       

    
    
  



 
 
    
Alig confidence 
















































Template Conservation    

   
 

 
    
 
  


  

 
  

   
 

   

  
Template Sequence  EILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDE
Template Known Secondary structure  S
TT


TS
Template Predicted Secondary structure 






Template SS confidence 
















































   156...160.........170.........180.........190.........200....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D