Emaill.a.kelley@imperial.ac.uk
DescriptionA1A546
DateWed Jul 10 14:42:12 BST 2013
Unique Job ID662cb7bcad34e871

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c2dmtA_



99.9 35 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein barh-like 1;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
2c2kt0A_



99.9 26 PDB header:transcription regulation
Chain: A: PDB Molecule:homeobox protein nanog;
PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
3d1pufa_



99.9 37 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
4c2m34A_



99.9 46 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein gbx-1;
PDBTitle: nmr structure of the homeodomain transcription factor gbx1 from homo2 sapiens
5c2dmsA_



99.9 47 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein otx2;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2
6d1zq3p1



99.9 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
7d1nk3p_



99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
8c3a01A_



99.8 36 PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeodomain-containing protein;
PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna
9d1b72a_



99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
10d1ahdp_



99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
11c2dmuA_



99.8 48 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox protein goosecoid;
PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid
12d1fjla_



99.8 59 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
13c2djnA_



99.8 33 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein dlx-5;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5
14c2dmqA_



99.8 30 PDB header:dna binding protein
Chain: A: PDB Molecule:lim/homeobox protein lhx9;
PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9
15d1ftza_



99.8 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
16d2lfba_



99.8 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
17d1b8ia_



99.8 41 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
18d1ftta_



99.8 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
19c2da3A_



99.8 32 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)
20c2m0cA_



99.8 62 PDB header:gene regulation
Chain: A: PDB Molecule:homeobox protein aristaless-like 4;
PDBTitle: solution nmr structure of homeobox domain of human alx4, northeast2 structural genomics consortium (nesg) target hr4490c
21d2cufa1



not modelled 99.8 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
22c2l9rA_



not modelled 99.8 31 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein nkx-3.1;
PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a
23d1ig7a_



not modelled 99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
24d1jgga_



not modelled 99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
25d1uhsa_



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
26d2e1oa1



not modelled 99.8 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
27d2cuea1



not modelled 99.8 59 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
28d1vnda_



not modelled 99.8 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
29d2craa1



not modelled 99.8 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
30c2k40A_



not modelled 99.8 41 PDB header:dna binding protein
Chain: A: PDB Molecule:homeobox expressed in es cells 1;
PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l
31d1fjlb_



not modelled 99.8 60 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
32d2hddb_



not modelled 99.8 43 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
33c2da2A_



not modelled 99.8 36 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1)
34c3d1nK_



not modelled 99.8 27 PDB header:transcription regulator/dna
Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1;
PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter
35d1bw5a_



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
36c2da1A_



not modelled 99.8 26 PDB header:transcription
Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein;
PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1)
37d9anta_



not modelled 99.8 45 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
38d1octc1



not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
39d1yz8p1



not modelled 99.8 55 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
40c2vi6F_



not modelled 99.8 35 PDB header:transcription
Chain: F: PDB Molecule:homeobox protein nanog;
PDBTitle: crystal structure of the nanog homeodomain
41d1ztra1



not modelled 99.8 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
42d1gt0c1



not modelled 99.8 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
43d1sana_



not modelled 99.8 41 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
44d1wh5a_



not modelled 99.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
45d1hdpa_



not modelled 99.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
46c3l1pA_



not modelled 99.8 23 PDB header:transcription/dna
Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1;
PDBTitle: pou protein:dna complex
47c3a03A_



not modelled 99.8 40 PDB header:gene regulation
Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2;
PDBTitle: crystal structure of hox11l1 homeodomain
48d1ocpa_



not modelled 99.8 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
49c2ly9A_



not modelled 99.8 21 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: solution nmr structure of homeobox 2 domain from human zhx1 repressor,2 northeast structural genomics consortium (nesg) target hr7907f
50c2dn0A_



not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3
51d1p7ia_



not modelled 99.8 47 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
52d1du0a_



not modelled 99.8 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
53d1e3oc1



not modelled 99.8 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
54d2hi3a1



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
55c1hf0A_



not modelled 99.8 28 PDB header:transcription
Chain: A: PDB Molecule:octamer-binding transcription factor 1;
PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer
56d1au7a1



not modelled 99.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
57c2da4A_



not modelled 99.8 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156;
PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
58d1le8a_



not modelled 99.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
59d1mh3a1



not modelled 99.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
60d1f43a_



not modelled 99.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
61c2dmnA_



not modelled 99.8 18 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif2lx;
PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
62d2ecca1



not modelled 99.7 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
63c1ic8B_



not modelled 99.7 26 PDB header:transcription/dna
Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product
64c2h8rA_



not modelled 99.7 30 PDB header:transcription activator/dna
Chain: A: PDB Molecule:hepatocyte nuclear factor 1-beta;
PDBTitle: hepatocyte nuclear factor 1b bound to dna: mody5 gene2 product
65c1au7B_



not modelled 99.7 25 PDB header:transcription/dna
Chain: B: PDB Molecule:protein pit-1;
PDBTitle: pit-1 mutant/dna complex
66c2da5A_



not modelled 99.7 19 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3;
PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
67c2dmpA_



not modelled 99.7 15 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2
68d2ecba1



not modelled 99.7 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
69c2da7A_



not modelled 99.7 14 PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger homeobox protein 1b;
PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
70d1lfup_



not modelled 99.7 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
71d1p7jb_



not modelled 99.7 43 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
72c1s7eA_



not modelled 99.7 20 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 6;
PDBTitle: solution structure of hnf-6
73d1pufb_



not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
74c1x2mA_



not modelled 99.7 24 PDB header:transcription
Chain: A: PDB Molecule:lag1 longevity assurance homolog 6;
PDBTitle: solution structure of the homeobox domain of mouse lag12 longevity assurance homolog 6
75c3narA_



not modelled 99.7 27 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1;
PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4)
76d1mnmc_



not modelled 99.7 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
77d1s7ea1



not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
78c2xsdC_



not modelled 99.7 25 PDB header:transcription/dna
Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1;
PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna
79c3nauA_



not modelled 99.7 24 PDB header:transcription
Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2;
PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
80d1le8b_



not modelled 99.7 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
81d1lfba_



not modelled 99.7 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
82d1yrnb_



not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
83d1o4xa1



not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
84c2e19A_



not modelled 99.7 22 PDB header:transcription
Chain: A: PDB Molecule:transcription factor 8;
PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8
85c2lk2A_



not modelled 99.7 18 PDB header:transcription
Chain: A: PDB Molecule:homeobox protein tgif1;
PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
86d1akha_



not modelled 99.7 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
87d1x2na1



not modelled 99.7 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
88d1du6a_



not modelled 99.6 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
89d2cqxa1



not modelled 99.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
90d2r5yb1



not modelled 99.6 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
91d1x2ma1



not modelled 99.6 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
92d1k61a_



not modelled 99.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
93d2p81a1



not modelled 99.5 43 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
94c4egcA_



not modelled 99.2 24 PDB header:transcription/hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
95c2nzzA_



not modelled 97.9 53 PDB header:membrane protein
Chain: A: PDB Molecule:penetratin conjugated gas (374-394) peptide;
PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide
96d1wh7a_



not modelled 97.5 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
97c1mh3A_



not modelled 97.3 18 PDB header:sugar binding, dna binding protein
Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera;
PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i
98d1wi3a_



not modelled 97.3 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
99c2elhA_



not modelled 91.1 19 PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
100c2ys9A_



not modelled 87.5 23 PDB header:transcription
Chain: A: PDB Molecule:homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
101d1hlva1



not modelled 86.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
102c3bdnB_



not modelled 86.8 16 PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
103c1hlvA_



not modelled 85.9 15 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
104d1smyf2



not modelled 85.8 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
105d1rp3a2



not modelled 85.0 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
106c2ktgA_



not modelled 84.2 15 PDB header:ca-binding protein
Chain: A: PDB Molecule:calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
107d1avsa_



not modelled 83.4 12 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
108c3vdoA_



not modelled 81.3 13 PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
109c1or7A_



not modelled 80.2 14 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
110c2pmyB_



not modelled 78.2 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ras and ef-hand domain-containing protein;
PDBTitle: ef-hand domain of human rasef
111d1rioa_



not modelled 77.5 16 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
112d1sw8a_



not modelled 77.2 21 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
113c3hugA_



not modelled 74.0 13 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
114c3mzyA_



not modelled 73.6 15 PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
115d1or7a1



not modelled 72.5 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
116c2kgrA_



not modelled 72.2 11 PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a
117d1l3la1



not modelled 70.3 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
118c4if4A_



not modelled 70.0 14 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
119c2lfwA_



not modelled 69.1 17 PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
120c2o8xA_



not modelled 67.1 12 PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc