Return to main results Retrieve Phyre Job Id

Job DescriptionA1A546
Confidence99.65%DateWed Jul 10 14:42:12 BST 2013
Rank88Aligned Residues60
% Identity20%Templated1du6a_
SCOP infoDNA/RNA-binding 3-helical bundle Homeodomain-like Homeodomain
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   76...80.........90......... 100.........110.........120.........130..
Predicted Secondary structure 










...








Query SS confidence 























. . .
































Query Sequence  KNKRRVRTTFTTEQLQELEKLFHF. . . THYPDIHVRSQLASRINLPEARVQIWFQNQRAK
Query Conservation     

 

  
  
   
   
  ...   
       

    
    
  



 
 
Alig confidence 























...
































Template Conservation 




 
          
   
     




  

  

    
   

  

 
 
 
Template Sequence  SSGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR
Template Known Secondary structure 







SSTTTTTTS



TS
TTT
Template Predicted Secondary structure 




















Template SS confidence 



























































   1........10.........20.........30.........40.........50.........60
 
   133..
Predicted Secondary structure 
Query SS confidence 


Query Sequence  WRK
Query Conservation     
Alig confidence 


Template Conservation   

Template Sequence  YKK
Template Known Secondary structure  SS
Template Predicted Secondary structure 

Template SS confidence 


   61..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D