Return to main results Retrieve Phyre Job Id

Job DescriptionA1A546
Confidence99.84%DateWed Jul 10 14:42:12 BST 2013
Rank16Aligned Residues68
% Identity28%Templated2lfba_
SCOP infoDNA/RNA-binding 3-helical bundle Homeodomain-like Homeodomain
ResolutionUNK
Model Dimensions (Å)X:37.887 Y:42.097 Z:27.997

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   73......80.........90.........100.........110......
Predicted Secondary structure 



















................
Query SS confidence 











































. . . . . . . . . . . . . . . .
Query Sequence  EEKKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRIN. . . . . . . . . . . . . . . .
Query Conservation        

 

  
  
   
   
     
       

    ................
Alig confidence 











































................
Template Conservation   
  
 

 

 

  

  

  
  
 


   
  

  

                
Template Sequence  DPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQG
Template Known Secondary structure 


S
SS
SS



TT
SS

ST

GGGGGG
Template Predicted Secondary structure 
































Template SS confidence 



























































   4.....10.........20.........30.........40.........50.........60...
 
   117..120.........130.........140
Predicted Secondary structure  .....



Query SS confidence  . . . . .























Query Sequence  . . . . . LPEARVQIWFQNQRAKWRKQEKSG
Query Conservation  .....
    
  



 
 
        
Alig confidence  .....























Template Conservation       


  
  





 
 
      
Template Sequence  LGSNLVTEVRVYNWFANRRKEEAFRHKLA
Template Known Secondary structure  GGGG


S
Template Predicted Secondary structure 








Template SS confidence 




























   64.....70.........80.........90..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D