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Job DescriptionA1A546
Confidence99.86%DateWed Jul 10 14:42:12 BST 2013
Rank2Aligned Residues84
% Identity26%Templatec2kt0A_
PDB info PDB header:transcription regulationChain: A: PDB Molecule:homeobox protein nanog; PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
ResolutionUNK
Model Dimensions (Å)X:44.783 Y:37.405 Z:30.945

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110......
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Query Sequence  TIPGSKLERPPQDQPQEEKKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRIN
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Template Sequence  SKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN
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   1........10.........20.........30.........40.........50.........60
 
   117..120.........130.........140
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Query Sequence  LPEARVQIWFQNQRAKWRKQEKSG
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Template Sequence  LSYKQVKTWFQNQRMKSKRWQKNN
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   61........70.........80....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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