Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	I	S	D	A	A	Q	A	H	F	A	K	L	L	A	N	Q	E	E	G	T	Q	I	R	V	F	V	I	N	P	G	T	P	N	A	E	C	G	V	S	Y	C	P	P	D	A	V	E	A	T	D	T	A	L	K	F	D	L
Secondary structure
SS confidence
Disorder		?																		?	?	?	?	?																							?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	T	A	Y	V	D	E	L	S	A	P	Y	L	E	D	A	E	I	D	F	V	T	D	Q	L	G	S	Q	L	T	L	K	A	P	N	A	K	M	R	K	V	A	D	D	A	P	L	M	E	R	V	E	Y	M	L	Q	S	Q	I	N
Secondary structure
SS confidence
Disorder																										?	?	?	?			?	?	?		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	Q	L	A	G	H	G	G	R	V	S	L	M	E	I	T	E	D	G	Y	A	I	L	Q	F	G	G	G	C	N	G	C	S	M	V	D	V	T	L	K	E	G	I	E	K	Q	L	L	N	E	F	P	E	L	K	G	V	R	D	L
Secondary structure
SS confidence
Disorder																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.
Sequence		T	E	H	Q	R	G	E	H	S	Y	Y
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2k4z chain A Region: 1 - 101 Aligned: 98 Modelled: 101 Confidence: 100.0% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 Phyre2 PDB 1veh chain A Region: 100 - 186 Aligned: 86 Modelled: 87 Confidence: 100.0% Identity: 29% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 1xhj chain A Region: 101 - 188 Aligned: 86 Modelled: 88 Confidence: 100.0% Identity: 31% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 1s98 chain A Region: 2 - 99 Aligned: 96 Modelled: 98 Confidence: 100.0% Identity: 26% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 2d2a chain A Region: 2 - 99 Aligned: 96 Modelled: 98 Confidence: 99.9% Identity: 21% PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters Phyre2 PDB 1nwb chain A Region: 1 - 94 Aligned: 92 Modelled: 94 Confidence: 99.9% Identity: 26% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 1x0g chain A Region: 1 - 98 Aligned: 89 Modelled: 98 Confidence: 99.9% Identity: 20% PDB header:metal binding protein Chain: A: PDB Molecule:isca; PDBTitle: crystal structure of isca with the [2fe-2s] cluster Phyre2 PDB 2jnv chain A Region: 109 - 186 Aligned: 76 Modelled: 78 Confidence: 99.9% Identity: 34% PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa Phyre2 PDB 2apn chain A Region: 2 - 98 Aligned: 95 Modelled: 97 Confidence: 99.9% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure Phyre2 PDB 2z51 chain A Region: 108 - 186 Aligned: 77 Modelled: 79 Confidence: 99.9% Identity: 35% PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis Phyre2 PDB 1th5 chain A domain 1 Region: 108 - 181 Aligned: 68 Modelled: 74 Confidence: 99.8% Identity: 25% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 2p2e chain A domain 1 Region: 2 - 96 Aligned: 93 Modelled: 95 Confidence: 97.7% Identity: 16% Fold: HesB-like domain Superfamily: HesB-like domain Family: HesB-like domain Phyre2 PDB 2qgo chain A Region: 2 - 94 Aligned: 85 Modelled: 93 Confidence: 97.6% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus Phyre2 PDB 3lno chain A Region: 104 - 189 Aligned: 85 Modelled: 86 Confidence: 96.1% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis Phyre2 PDB 2cu6 chain A domain 1 Region: 106 - 189 Aligned: 81 Modelled: 84 Confidence: 93.9% Identity: 19% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: PaaD-like Phyre2 PDB 1uwd chain A Region: 108 - 189 Aligned: 80 Modelled: 82 Confidence: 91.4% Identity: 14% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: PaaD-like Phyre2 PDB 3qau chain A Region: 75 - 189 Aligned: 113 Modelled: 115 Confidence: 63.9% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: 3-hydroxy-3-methylglutaryl-coenzyme a reductase from streptococcus2 pneumoniae Phyre2 PDB 1r7i chain B Region: 75 - 187 Aligned: 112 Modelled: 113 Confidence: 59.5% Identity: 7% PDB header:oxidoreductase Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: hmg-coa reductase from p. mevalonii, native structure at 2.2 angstroms2 resolution. Phyre2 PDB 2c42 chain A domain 2 Region: 145 - 182 Aligned: 32 Modelled: 38 Confidence: 56.1% Identity: 25% Fold: Thiamin diphosphate-binding fold (THDP-binding) Superfamily: Thiamin diphosphate-binding fold (THDP-binding) Family: PFOR PP module Phyre2 PDB 1xg8 chain A Region: 148 - 173 Aligned: 25 Modelled: 26 Confidence: 50.6% Identity: 12% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: YuzD-like Phyre2 1 c2k4zA_ 2 d1veha_ 3 d1xhja_ 4 d1s98a_ 5 c2d2aA_ 6 d1nwba_ 7 c1x0gA_ 8 c2jnvA_ 9 c2apnA_ 10 c2z51A_ 11 d1th5a1 12 d2p2ea1 13 c2qgoA_ 14 c3lnoA_ 15 d2cu6a1 16 d1uwda_ 17 c3qauA_ 18 c1r7iB_ 19 d2c42a2 20 d1xg8a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k4zA_ 100.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 2 d1veha_ 100.0 29 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 3 d1xhja_ 100.0 31 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 4 d1s98a_ 100.0 26 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 5 c2d2aA_ 99.9 21 PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters 6 d1nwba_ 99.9 26 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 7 c1x0gA_ 99.9 20 PDB header:metal binding protein Chain: A: PDB Molecule:isca; PDBTitle: crystal structure of isca with the [2fe-2s] cluster 8 c2jnvA_ 99.9 34 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 9 c2apnA_ 99.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 10 c2z51A_ 99.9 35 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis 11 d1th5a1 99.8 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 12 d2p2ea1 97.7 16 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 13 c2qgoA_ 97.6 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative fe-s biosynthesis protein; PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus 14 c3lnoA_ 96.1 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 15 d2cu6a1 93.9 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 16 d1uwda_ 91.4 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 17 c3qauA_ 63.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: 3-hydroxy-3-methylglutaryl-coenzyme a reductase from streptococcus2 pneumoniae 18 c1r7iB_ 59.5 7 PDB header:oxidoreductase Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: hmg-coa reductase from p. mevalonii, native structure at 2.2 angstroms2 resolution. 19 d2c42a2 56.1 25 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR PP module 20 d1xg8a_ 50.6 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like 21 d1t82a_ not modelled 43.6 22 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:PaaI/YdiI-like 22 c3lwaA_ not modelled 40.2 20 PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a 23 c2c3yA_ not modelled 33.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 24 d2a0sa1 not modelled 32.5 16 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:6-pyruvoyl tetrahydropterin synthase 25 d1xn7a_ not modelled 31.6 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 26 d1wp0a1 not modelled 29.4 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 27 d1qxha_ not modelled 29.2 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 28 c2rmlA_ not modelled 28.3 28 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 29 c1yjrA_ not modelled 26.0 32 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 30 d1e2ya_ not modelled 22.9 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 31 d1y13a_ not modelled 21.7 15 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:6-pyruvoyl tetrahydropterin synthase 32 d1j2ga2 not modelled 20.4 24 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 33 c1bcrA_ not modelled 20.1 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:serine carboxypeptidase ii; PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature 34 c2dhmA_ not modelled 19.7 20 PDB header:protein binding Chain: A: PDB Molecule:protein bola; PDBTitle: solution structure of the bola protein from escherichia coli 35 d1s6ua_ not modelled 19.7 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 36 c2rogA_ not modelled 19.1 35 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 37 c3e8pA_ not modelled 18.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the protein q8e9m7 from shewanella2 oneidensis related to thioesterase superfamily. northeast3 structural genomics consortium target sor246. 38 d2ibaa2 not modelled 18.6 20 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 39 c3ixrA_ not modelled 18.2 9 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant 40 c2rliA_ not modelled 17.7 8 PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 41 c2k5eA_ not modelled 16.8 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 42 c1y8oA_ not modelled 16.5 15 PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex 43 d2yzca2 not modelled 15.7 12 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 44 c1gjvA_ not modelled 15.7 19 PDB header:transferase Chain: A: PDB Molecule:[3-methyl-2-oxobutanoate dehydrogenase PDBTitle: branched-chain alpha-ketoacid dehydrogenase kinase (bck)2 complxed with atp-gamma-s 45 c2npbA_ not modelled 15.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 46 c1gxsC_ not modelled 14.8 16 PDB header:lyase Chain: C: PDB Molecule:p-(s)-hydroxymandelonitrile lyase chain a; PDBTitle: crystal structure of hydroxynitrile lyase from sorghum2 bicolor in complex with inhibitor benzoic acid: a novel3 cyanogenic enzyme 47 c2kt2A_ not modelled 14.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 48 c2q8fA_ not modelled 14.0 15 PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1 49 d1r9fa_ not modelled 13.8 21 Fold:Tombusvirus P19 core protein, VP19 Superfamily:Tombusvirus P19 core protein, VP19 Family:Tombusvirus P19 core protein, VP19 50 d1q8la_ not modelled 13.7 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 51 c2b7kD_ not modelled 13.6 11 PDB header:metal binding protein Chain: D: PDB Molecule:sco1 protein; PDBTitle: crystal structure of yeast sco1 52 d2b7ka1 not modelled 13.4 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 53 c2k53A_ not modelled 13.2 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:a3dk08 protein; PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9 54 d1rpua_ not modelled 13.0 21 Fold:Tombusvirus P19 core protein, VP19 Superfamily:Tombusvirus P19 core protein, VP19 Family:Tombusvirus P19 core protein, VP19 55 c1rpuA_ not modelled 13.0 21 PDB header:rna binding protein/rna Chain: A: PDB Molecule:19 kda protein; PDBTitle: crystal structure of cirv p19 bound to sirna 56 c3lgbB_ not modelled 12.7 14 PDB header:transferase Chain: B: PDB Molecule:dna primase large subunit; PDBTitle: crystal structure of the fe-s domain of the yeast dna primase 57 c3cynC_ not modelled 12.6 20 PDB header:oxidoreductase Chain: C: PDB Molecule:probable glutathione peroxidase 8; PDBTitle: the structure of human gpx8 58 c1j2gC_ not modelled 12.6 24 PDB header:oxidoreductase Chain: C: PDB Molecule:uricase; PDBTitle: crystal structure of urate oxidase from bacillus sp. tb-90 co-2 crystallized with 8-azaxanthine 59 c2jszA_ not modelled 12.6 7 PDB header:oxidoreductase Chain: A: PDB Molecule:probable thiol peroxidase; PDBTitle: solution structure of tpx in the reduced state 60 c2v1mA_ not modelled 12.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase; PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase 61 d1owxa_ not modelled 12.2 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 62 c3gknA_ not modelled 12.1 7 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures 63 c1zyeL_ not modelled 12.0 9 PDB header:oxidoreductase Chain: L: PDB Molecule:thioredoxin-dependent peroxide reductase; PDBTitle: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii 64 c3qq5A_ not modelled 12.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:small gtp-binding protein; PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf 65 c1r56H_ not modelled 11.9 20 PDB header:oxidoreductase Chain: H: PDB Molecule:uricase; PDBTitle: uncomplexed urate oxidase from aspergillus flavus 66 c2yzbA_ not modelled 11.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:uricase; PDBTitle: crystal structure of uricase from arthrobacter globiformis2 in complex with uric acid (substrate) 67 d1q98a_ not modelled 11.5 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 68 d1afia_ not modelled 11.1 23 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 69 d1o73a_ not modelled 10.5 31 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 70 d2aw0a_ not modelled 10.4 35 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 71 c2gvsA_ not modelled 10.2 21 PDB header:lipid binding protein Chain: A: PDB Molecule:chemosensory protein csp-sg4; PDBTitle: nmr solution structure of cspsg4 72 d1kx9b_ not modelled 9.9 17 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 73 c3me5A_ not modelled 9.7 22 PDB header:transferase Chain: A: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 301 74 c2kyzA_ not modelled 9.7 30 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 75 c2ga7A_ not modelled 9.6 31 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 76 d2cx4a1 not modelled 9.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 77 d2ggpb1 not modelled 9.3 29 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 78 d1n8va_ not modelled 9.2 17 Fold:alpha-alpha superhelix Superfamily:Chemosensory protein Csp2 Family:Chemosensory protein Csp2 79 d1osda_ not modelled 9.1 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 80 d2a4va1 not modelled 9.1 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 81 c3dwvB_ not modelled 9.0 12 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase-like protein; PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase,2 oxidized form 82 d1dosa_ not modelled 8.8 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 83 d1xzoa1 not modelled 8.6 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 84 d1gp1a_ not modelled 8.5 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 85 d1p6ta1 not modelled 8.3 29 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 86 d1rutx3 not modelled 8.2 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 87 c2l9wA_ not modelled 7.8 12 PDB header:splicing, rna binding protein Chain: A: PDB Molecule:u4/u6 snrna-associated-splicing factor prp24; PDBTitle: solution structure of the c-terminal domain of prp24 88 c2ywiA_ not modelled 7.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus 89 c2he3A_ not modelled 7.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2) 90 d1u9ya1 not modelled 7.6 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 91 d1yexa1 not modelled 7.6 8 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 92 c3kebB_ not modelled 7.4 9 PDB header:oxidoreductase Chain: B: PDB Molecule:probable thiol peroxidase; PDBTitle: thiol peroxidase from chromobacterium violaceum 93 c3l9qB_ not modelled 7.3 19 PDB header:transferase Chain: B: PDB Molecule:dna primase large subunit; PDBTitle: crystal structure of human polymerase alpha-primase p58 iron-sulfur2 cluster domain 94 c2gcfA_ not modelled 7.1 26 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 95 c3i24B_ not modelled 7.1 20 PDB header:hydrolase Chain: B: PDB Molecule:hit family hydrolase; PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176 96 c3dxsX_ not modelled 7.0 19 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 97 c3ha9A_ not modelled 7.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized thioredoxin-like protein; PDBTitle: the 1.7a crystal structure of a thioredoxin-like protein from2 aeropyrum pernix 98 d1xvwa1 not modelled 7.0 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 99 c3eurA_ not modelled 6.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the c-terminal domain of uncharacterized protein2 from bacteroides fragilis nctc 9343

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0