Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	P	D	A	H	Q	V	K	Q	F	L	L	N	L	Q	D	T	I	C	Q	Q	L	T	A	V	D	G	A	E	F	V	E	D	S	W	Q	R	E	A	G	G	G	G	R	S	R	V	L	R	N	G	G	V	F	E	Q	A	G	V
Secondary structure
SS confidence
Disorder		?	?	?	?																												?			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	F	S	H	V	H	G	E	A	M	P	A	S	A	T	A	H	R	P	E	L	A	G	R	S	F	E	A	M	G	V	S	L	V	V	H	P	H	N	P	Y	V	P	T	S	H	A	N	V	R	F	F	I	A	E	K	P	G	A	D
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?																																		?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	V	W	W	F	G	G	G	F	D	L	T	P	F	Y	G	F	E	E	D	A	I	H	W	H	R	T	A	R	D	L	C	L	P	F	G	E	D	V	Y	P	R	Y	K	K	W	C	D	E	Y	F	Y	L	K	H	R	N	E	Q	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	I	G	G	L	F	F	D	D	L	N	T	P	D	F	D	R	C	F	A	F	M	Q	A	V	G	K	G	Y	T	D	A	Y	L	P	I	V	E	R	R	K	A	M	A	Y	G	E	R	E	R	N	F	Q	L	Y	R	R	G	R	Y
Secondary structure
SS confidence
Disorder																																										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Sequence		V	E	F	N	L	V	W	D	R	G	T	L	F	G	L	Q	T	G	G	R	T	E	S	I	L	M	S	M	P	P	L	V	R	W	E	Y	D	Y	Q	P	K	D	G	S	P	E	A	A	L	S	E	F	I	K	V	R	D	W	V
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?										?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2aex chain A Region: 3 - 299 Aligned: 297 Modelled: 297 Confidence: 100.0% Identity: 48% PDB header:oxidoreductase Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial; PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria Phyre2 PDB 1tkl chain A Region: 2 - 299 Aligned: 298 Modelled: 298 Confidence: 100.0% Identity: 47% Fold: Coproporphyrinogen III oxidase Superfamily: Coproporphyrinogen III oxidase Family: Coproporphyrinogen III oxidase Phyre2 PDB 1vju chain A Region: 6 - 299 Aligned: 283 Modelled: 294 Confidence: 100.0% Identity: 66% Fold: Coproporphyrinogen III oxidase Superfamily: Coproporphyrinogen III oxidase Family: Coproporphyrinogen III oxidase Phyre2 PDB 1txn chain A Region: 2 - 244 Aligned: 243 Modelled: 243 Confidence: 100.0% Identity: 44% Fold: Coproporphyrinogen III oxidase Superfamily: Coproporphyrinogen III oxidase Family: Coproporphyrinogen III oxidase Phyre2 PDB 3lm3 chain A Region: 126 - 144 Aligned: 19 Modelled: 19 Confidence: 47.3% Identity: 42% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution Phyre2 PDB 1ci4 chain A Region: 137 - 170 Aligned: 34 Modelled: 34 Confidence: 35.3% Identity: 18% Fold: SAM domain-like Superfamily: Barrier-to-autointegration factor, BAF Family: Barrier-to-autointegration factor, BAF Phyre2 PDB 1kko chain A domain 2 Region: 181 - 190 Aligned: 10 Modelled: 10 Confidence: 28.7% Identity: 40% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 1kcz chain A domain 2 Region: 181 - 190 Aligned: 10 Modelled: 10 Confidence: 28.3% Identity: 50% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 3fub chain A Region: 127 - 148 Aligned: 22 Modelled: 22 Confidence: 27.9% Identity: 27% PDB header:hormone Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: crystal structure of gdnf-gfralpha1 complex Phyre2 PDB 2v5e chain A Region: 127 - 148 Aligned: 22 Modelled: 22 Confidence: 27.3% Identity: 27% PDB header:receptor/glycoprotein complex Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: the structure of the gdnf\:coreceptor complex\: insights2 into ret signalling and heparin binding. Phyre2 PDB 1y7p chain A domain 2 Region: 171 - 203 Aligned: 31 Modelled: 33 Confidence: 26.9% Identity: 26% Fold: Ferredoxin-like Superfamily: ACT-like Family: AF1403 N-terminal domain-like Phyre2 PDB 2r7t chain A Region: 47 - 62 Aligned: 16 Modelled: 16 Confidence: 21.7% Identity: 38% PDB header:transferase/rna Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of rotavirus sa11 vp1/rna (ugugaacc)2 complex Phyre2 PDB 2r39 chain A Region: 241 - 264 Aligned: 22 Modelled: 24 Confidence: 21.1% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus Phyre2 PDB 1kko chain B Region: 181 - 190 Aligned: 10 Modelled: 10 Confidence: 18.5% Identity: 40% PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Phyre2 PDB 1j2g chain A domain 1 Region: 8 - 62 Aligned: 55 Modelled: 55 Confidence: 16.7% Identity: 15% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: Urate oxidase (uricase) Phyre2 PDB 1bdf chain A domain 1 Region: 265 - 285 Aligned: 21 Modelled: 21 Confidence: 16.1% Identity: 33% Fold: DCoH-like Superfamily: RBP11-like subunits of RNA polymerase Family: RNA polymerase alpha subunit dimerisation domain Phyre2 PDB 1t9k chain A Region: 44 - 110 Aligned: 55 Modelled: 67 Confidence: 16.0% Identity: 18% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: IF2B-like Phyre2 PDB 1gg4 chain A domain 1 Region: 173 - 207 Aligned: 34 Modelled: 35 Confidence: 15.7% Identity: 21% Fold: MurD-like peptide ligases, peptide-binding domain Superfamily: MurD-like peptide ligases, peptide-binding domain Family: MurCDEF C-terminal domain Phyre2 PDB 2pby chain B Region: 54 - 102 Aligned: 17 Modelled: 17 Confidence: 14.9% Identity: 71% PDB header:hydrolase Chain: B: PDB Molecule:glutaminase; PDBTitle: probable glutaminase from geobacillus kaustophilus hta426 Phyre2 PDB 1yua chain A domain 1 Region: 168 - 187 Aligned: 15 Modelled: 20 Confidence: 13.1% Identity: 47% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Prokaryotic DNA topoisomerase I, a C-terminal fragment Phyre2 1 c2aexA_ 2 d1tkla_ 3 d1vjua_ 4 d1txna_ 5 c3lm3A_ 6 d1ci4a_ 7 d1kkoa2 8 d1kcza2 9 c3fubA_ 10 c2v5eA_ 11 d1y7pa2 12 c2r7tA_ 13 c2r39A_ 14 c1kkoB_ 15 d1j2ga1 16 d1bdfa1 17 d1t9ka_ 18 d1gg4a1 19 c2pbyB_ 20 d1yuaa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2aexA_ 100.0 48 PDB header:oxidoreductase Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial; PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria 2 d1tkla_ 100.0 47 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 3 d1vjua_ 100.0 66 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 4 d1txna_ 100.0 44 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 5 c3lm3A_ 47.3 42 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution 6 d1ci4a_ 35.3 18 Fold:SAM domain-like Superfamily:Barrier-to-autointegration factor, BAF Family:Barrier-to-autointegration factor, BAF 7 d1kkoa2 28.7 40 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 8 d1kcza2 28.3 50 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 9 c3fubA_ 27.9 27 PDB header:hormone Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: crystal structure of gdnf-gfralpha1 complex 10 c2v5eA_ 27.3 27 PDB header:receptor/glycoprotein complex Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: the structure of the gdnf\:coreceptor complex\: insights2 into ret signalling and heparin binding. 11 d1y7pa2 26.9 26 Fold:Ferredoxin-like Superfamily:ACT-like Family:AF1403 N-terminal domain-like 12 c2r7tA_ 21.7 38 PDB header:transferase/rna Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of rotavirus sa11 vp1/rna (ugugaacc)2 complex 13 c2r39A_ 21.1 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 14 c1kkoB_ 18.5 40 PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase 15 d1j2ga1 16.7 15 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 16 d1bdfa1 16.1 33 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 17 d1t9ka_ 16.0 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 18 d1gg4a1 15.7 21 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 19 c2pbyB_ 14.9 71 PDB header:hydrolase Chain: B: PDB Molecule:glutaminase; PDBTitle: probable glutaminase from geobacillus kaustophilus hta426 20 d1yuaa1 13.1 47 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 21 c3ccjU_ not modelled 13.0 29 PDB header:ribosome Chain: U: PDB Molecule:50s ribosomal protein l24e; PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u 22 d1vb5a_ not modelled 12.8 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 23 c2yvkA_ not modelled 12.7 16 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 24 c3llxA_ not modelled 12.5 12 PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution 25 d1vqou1 not modelled 12.3 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Ribosomal protein L24e 26 d1auna_ not modelled 12.0 38 Fold:Osmotin, thaumatin-like protein Superfamily:Osmotin, thaumatin-like protein Family:Osmotin, thaumatin-like protein 27 d2yzca1 not modelled 11.7 26 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 28 c2zkru_ not modelled 11.6 43 PDB header:ribosomal protein/rna Chain: U: PDB Molecule:rna expansion segment es41; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 29 d1wmxb_ not modelled 11.6 35 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 30 c1w2wJ_ not modelled 11.5 22 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 31 c3uo9B_ not modelled 11.3 14 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 32 c2d35A_ not modelled 11.1 60 PDB header:cell cycle Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure of cell division reactivation factor,2 ceda 33 c1yuaA_ not modelled 10.9 47 PDB header:dna binding protein Chain: A: PDB Molecule:topoisomerase i; PDBTitle: c-terminal domain of escherichia coli topoisomerase i 34 c2bn8A_ not modelled 10.9 60 PDB header:cell cycle protein Chain: A: PDB Molecule:cell division activator ceda; PDBTitle: solution structure and interactions of the e.coli cell2 division activator protein ceda 35 c2yk5A_ not modelled 10.7 13 PDB header:transferase Chain: A: PDB Molecule:cmp-n-acetylneuraminate-beta-galactosamide-alpha-2,3- PDBTitle: structure of neisseria los-specific sialyltransferase (nst),2 in complex with cmp. 36 c3n2bD_ not modelled 10.5 17 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 37 d2fkla1 not modelled 10.0 33 Fold:Dodecin subunit-like Superfamily:Amyloid beta a4 protein copper binding domain (domain 2) Family:Amyloid beta a4 protein copper binding domain (domain 2) 38 c3ecsD_ not modelled 9.9 24 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 39 c4a1eT_ not modelled 9.6 29 PDB header:ribosome Chain: T: PDB Molecule:rpl24; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 40 d1ccwb_ not modelled 9.5 23 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Glutamate mutase, large subunit 41 c1u2zC_ not modelled 9.4 14 PDB header:transferase Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 PDBTitle: crystal structure of histone k79 methyltransferase dot1p2 from yeast 42 c2ebsB_ not modelled 9.2 21 PDB header:hydrolase Chain: B: PDB Molecule:oligoxyloglucan reducing end-specific PDBTitle: crystal structure anaalysis of oligoxyloglucan reducing-end-2 specific cellobiohydrolase (oxg-rcbh) d465n mutant3 complexed with a xyloglucan heptasaccharide 43 c3f42A_ not modelled 9.2 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 44 c3izcZ_ not modelled 9.1 29 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 45 d1e88a3 not modelled 9.1 38 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 46 d2piaa2 not modelled 9.1 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 47 d1uc8a1 not modelled 8.8 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 48 d1tvca2 not modelled 8.8 22 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 49 d1u5la_ not modelled 8.6 10 Fold:Prion-like Superfamily:Prion-like Family:Prion-like 50 d1tz9a_ not modelled 8.3 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 51 d1tzpa_ not modelled 8.2 35 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:MepA-like 52 d2a0ua1 not modelled 8.1 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 53 d1gff1_ not modelled 7.9 67 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 54 d1qfja2 not modelled 7.9 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 55 c3iz5Z_ not modelled 7.7 29 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 d1pzra_ not modelled 7.7 86 Fold:HLH-like Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS) Family:Docking domain B of the erythromycin polyketide synthase (DEBS) 57 d1ulva3 not modelled 7.7 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:CBD9-like Family:Glucodextranase, domain C 58 d2ibaa1 not modelled 7.5 16 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 59 d3be7a1 not modelled 7.4 27 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Zn-dependent arginine carboxypeptidase-like 60 c3cxjB_ not modelled 7.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 61 c2jv4A_ not modelled 7.4 25 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis/trans isomerase; PDBTitle: structure characterisation of pina ww domain and comparison2 with other group iv ww domains, pin1 and ess1 62 c2xdyA_ not modelled 7.4 20 PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid domain 63 d2d6fc2 not modelled 7.4 44 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 64 d2bi0a1 not modelled 7.3 46 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 65 d1edta_ not modelled 7.3 30 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 66 d1ny722 not modelled 7.3 27 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 67 d1pcva_ not modelled 7.3 38 Fold:Osmotin, thaumatin-like protein Superfamily:Osmotin, thaumatin-like protein Family:Osmotin, thaumatin-like protein 68 d1ddga2 not modelled 7.2 25 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 69 c2rhfA_ not modelled 7.2 13 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 70 c3n8bB_ not modelled 7.1 14 PDB header:nucleic acid binding protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 71 c1i7wB_ not modelled 7.1 50 PDB header:cell adhesion Chain: B: PDB Molecule:epithelial-cadherin; PDBTitle: beta-catenin/phosphorylated e-cadherin complex 72 d1e8ga1 not modelled 7.0 10 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like 73 c3nzpA_ not modelled 7.0 22 PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 74 c3nm7C_ not modelled 7.0 14 PDB header:nucleic acid binding protein Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 75 d1pgl22 not modelled 6.9 36 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 76 c2j3zA_ not modelled 6.9 18 PDB header:toxin Chain: A: PDB Molecule:c2 toxin component i; PDBTitle: crystal structure of the enzymatic component c2-i of the2 c2-toxin from clostridium botulinum at ph 6.1 77 c3nzqB_ not modelled 6.8 41 PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600 78 c3nm7D_ not modelled 6.7 14 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 79 c3n8bA_ not modelled 6.7 14 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 80 d1ehsa_ not modelled 6.6 19 Fold:Toxic hairpin Superfamily:Heat-stable enterotoxin B Family:Heat-stable enterotoxin B 81 c3ik2A_ not modelled 6.5 6 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase a; PDBTitle: crystal structure of a glycoside hydrolase family 44 endoglucanase2 produced by clostridium acetobutylium atcc 824 82 c3aagA_ not modelled 6.3 44 PDB header:transferase Chain: A: PDB Molecule:general glycosylation pathway protein; PDBTitle: crystal structure of c. jejuni pglb c-terminal domain 83 c1tvcA_ not modelled 6.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) 84 c2j10B_ not modelled 6.2 58 PDB header:transcription Chain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 85 c2ahnA_ not modelled 6.2 38 PDB header:allergen Chain: A: PDB Molecule:thaumatin-like protein; PDBTitle: high resolution structure of a cherry allergen pru av 2 86 d1qt1a_ not modelled 6.2 19 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 87 c2j10D_ not modelled 6.1 58 PDB header:transcription Chain: D: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 88 c2j10A_ not modelled 6.1 58 PDB header:transcription Chain: A: PDB Molecule:cellular tumor antigen p53; PDBTitle: p53 tetramerization domain mutant t329f q331k 89 c3a11D_ not modelled 6.1 20 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 90 c3ic8D_ not modelled 6.0 19 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein; PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a 91 d1rqwa_ not modelled 5.9 38 Fold:Osmotin, thaumatin-like protein Superfamily:Osmotin, thaumatin-like protein Family:Osmotin, thaumatin-like protein 92 c2k5dA_ not modelled 5.8 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sag0934; PDBTitle: solution nmr structure of sag0934 from streptococcus2 agalactiae. northeast structural genomics target sar32[1-3 108]. 93 d2aama1 not modelled 5.8 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:TM1410-like 94 c2aamA_ not modelled 5.8 12 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein tm1410; PDBTitle: crystal structure of a putative glycosidase (tm1410) from thermotoga2 maritima at 2.20 a resolution 95 d1ry7a_ not modelled 5.8 16 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 96 d1qqha_ not modelled 5.8 8 Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain 97 c3mt1B_ not modelled 5.7 15 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 98 c1s1iS_ not modelled 5.6 29 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l24-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 99 d1t3la1 not modelled 5.6 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0