Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6Z1
DateThu Jan 5 11:04:16 GMT 2012
Unique Job IDfb3b2ad0c02c5d7c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2khoA_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
Confidence and coverage
Confidence:100.0% Coverage: 94%
577 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQ
Secondary structure 
SS confidence 
Disorder  ?????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIETA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  AGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  FDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNVAGWQGEISREQF
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSI
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  DPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARA
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  QDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGL
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVL
Secondary structure 
SS confidence 
Disorder 
?????
??????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  ESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRM
Secondary structure 
SS confidence 
Disorder 
???????
?
Disorder confidence 
 
   .........610......
Sequence  DQSVRRALKGHSVDEV
Secondary structure 
SS confidence 
Disorder 
?????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2kho chain A

3D model

Region: 21 - 599
Aligned: 577
Modelled: 579
Confidence: 100.0%
Identity: 43%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate

Phyre2

PDB 3d2f chain C

3D model

Region: 19 - 612
Aligned: 592
Modelled: 594
Confidence: 100.0%
Identity: 22%
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70

Phyre2

PDB 2v7y chain A

3D model

Region: 21 - 531
Aligned: 486
Modelled: 489
Confidence: 100.0%
Identity: 48%
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state

Phyre2

PDB 1dkg chain D

3D model

Region: 21 - 378
Aligned: 358
Modelled: 358
Confidence: 100.0%
Identity: 45%
PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak

Phyre2

PDB 1hpm chain A

3D model

Region: 21 - 378
Aligned: 358
Modelled: 358
Confidence: 100.0%
Identity: 39%
PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site

Phyre2

PDB 3iuc chain C

3D model

Region: 18 - 380
Aligned: 362
Modelled: 363
Confidence: 100.0%
Identity: 40%
PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp

Phyre2

PDB 2v7z chain A

3D model

Region: 17 - 379
Aligned: 363
Modelled: 363
Confidence: 100.0%
Identity: 39%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state

Phyre2

PDB 1jcg chain A

3D model

Region: 19 - 384
Aligned: 320
Modelled: 334
Confidence: 100.0%
Identity: 24%
PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp

Phyre2

PDB 3h1q chain B

3D model

Region: 1 - 374
Aligned: 263
Modelled: 284
Confidence: 100.0%
Identity: 25%
PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans

Phyre2

PDB 1u00 chain A

3D model

Region: 389 - 615
Aligned: 227
Modelled: 227
Confidence: 100.0%
Identity: 100%
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc

Phyre2

PDB 1e4g chain T

3D model

Region: 17 - 374
Aligned: 328
Modelled: 333
Confidence: 100.0%
Identity: 15%
PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima

Phyre2

PDB 2e8a chain A domain 1

3D model

Region: 18 - 197
Aligned: 180
Modelled: 180
Confidence: 100.0%
Identity: 41%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1dkg chain D domain 2

3D model

Region: 200 - 378
Aligned: 179
Modelled: 179
Confidence: 100.0%
Identity: 46%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1dkg chain D domain 1

3D model

Region: 21 - 197
Aligned: 177
Modelled: 177
Confidence: 100.0%
Identity: 44%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1bup chain A domain 2

3D model

Region: 198 - 378
Aligned: 181
Modelled: 181
Confidence: 100.0%
Identity: 39%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 1bup chain A domain 1

3D model

Region: 21 - 198
Aligned: 178
Modelled: 178
Confidence: 100.0%
Identity: 39%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 2d0o chain A

3D model

Region: 4 - 375
Aligned: 334
Modelled: 348
Confidence: 100.0%
Identity: 17%
PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+

Phyre2

PDB 1o1f chain 4

3D model

Region: 16 - 378
Aligned: 310
Modelled: 326
Confidence: 100.0%
Identity: 17%
PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle

Phyre2

PDB 2e8a chain A domain 2

3D model

Region: 198 - 379
Aligned: 182
Modelled: 182
Confidence: 100.0%
Identity: 41%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Actin/HSP70

Phyre2

PDB 3dpq chain E

3D model

Region: 386 - 597
Aligned: 203
Modelled: 212
Confidence: 100.0%
Identity: 40%
PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)

Phyre2

PDB 1zc6 chain A domain 1

3D model

Region: 16 - 40
Aligned: 25
Modelled: 25
Confidence: 90.5%
Identity: 24%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: BadF/BadG/BcrA/BcrD-like

Phyre2

PDB 3mcp chain A

3D model

Region: 12 - 41
Aligned: 30
Modelled: 27
Confidence: 87.2%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution

Phyre2

PDB 1bg3 chain A domain 1

3D model

Region: 6 - 37
Aligned: 32
Modelled: 32
Confidence: 67.2%
Identity: 16%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Hexokinase

Phyre2
1
c2khoA_
2
c3d2fC_
3
c2v7yA_
4
c1dkgD_
5
c1hpmA_
6
c3iucC_
7
c2v7zA_
8
c1jcgA_
9
c3h1qB_
10
c1u00A_
11
c1e4gT_
12
d2e8aa1
13
d1dkgd2
14
d1dkgd1
15
d1bupa2
16
d1bupa1
17
c2d0oA_
18
c1o1f4_
19
d2e8aa2
20
c3dpqE_
21
22
23
24
25
26
27
28
29
30
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d1zc6a1
121
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c3mcpA_
129
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d1bg3a1
163
164
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166
167
168
169
170
171
172
173
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175
176
177
178
179
180
181
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2khoA_
100.0 43 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
2c3d2fC_
100.0 22 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
3c2v7yA_
100.0 48 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
4c1dkgD_
100.0 45 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
5c1hpmA_
100.0 39 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
6c3iucC_
100.0 40 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
7c2v7zA_
100.0 39 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
8c1jcgA_
100.0 24 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
9c3h1qB_
100.0 25 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
10c1u00A_
100.0 100 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
11c1e4gT_
100.0 15 PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima
12d2e8aa1
100.0 41 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
13d1dkgd2
100.0 46 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
14d1dkgd1
100.0 44 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
15d1bupa2
100.0 39 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
16d1bupa1
100.0 39 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
17c2d0oA_
100.0 17 PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+
18c1o1f4_
100.0 17 PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle
19d2e8aa2
100.0 41 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
20c3dpqE_
100.0 40 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
21c3n8eA_
not modelled 99.9 43 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
22c1mwmA_
not modelled 99.9 16 PDB header:structural protein
Chain: A: PDB Molecule:parm;
PDBTitle: parm from plasmid r1 adp form
23c3dwlB_
not modelled 99.9 14 PDB header:structural protein
Chain: B: PDB Molecule:actin-related protein 3;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
24c2p9lA_
not modelled 99.9 14 PDB header:structural protein
Chain: A: PDB Molecule:actin-like protein 3;
PDBTitle: crystal structure of bovine arp2/3 complex
25c2fsnB_
not modelled 99.9 21 PDB header:structural protein
Chain: B: PDB Molecule:hypothetical protein ta0583;
PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp
26d1jcea2
not modelled 99.9 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
27c1bprA_
not modelled 99.9 42 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
28d1jcea1
not modelled 99.9 32 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
29c2op6A_
not modelled 99.9 39 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
30d1yuwa1
not modelled 99.9 42 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
31c2ychA_
not modelled 99.8 20 PDB header:cell cycle
Chain: A: PDB Molecule:competence protein pilm;
PDBTitle: pilm-piln type iv pilus biogenesis complex
32c3js6A_
not modelled 99.8 13 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized parm protein;
PDBTitle: crystal structure of apo psk41 parm protein
33d1e4ft2
not modelled 99.8 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
34c3qb0C_
not modelled 99.8 17 PDB header:structural protein
Chain: C: PDB Molecule:actin-related protein 4;
PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp
35d1u00a2
not modelled 99.7 99 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
36c3dqgC_
not modelled 99.7 46 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
37d1dkza2
not modelled 99.7 53 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
38d2zgya2
not modelled 99.6 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
39d1u00a1
not modelled 99.6 100 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
40d1huxa_
not modelled 99.5 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
41d2fsja1
not modelled 99.4 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ta0583-like
42d1nm1a2
not modelled 99.2 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
43d1dkza1
not modelled 99.2 24 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
44d2hf3a2
not modelled 99.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
45d2fxua2
not modelled 99.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
46d1dkyb1
not modelled 98.9 26 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
47d1yaga2
not modelled 98.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
48c2e2pA_
not modelled 98.8 16 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
49d1k8kb1
not modelled 98.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
50c2p9kB_
not modelled 98.7 15 PDB header:structural protein
Chain: B: PDB Molecule:actin-like protein 2;
PDBTitle: crystal structure of bovine arp2/3 complex co-crystallized2 with atp and crosslinked with glutaraldehyde
51d1k8ka2
not modelled 98.6 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
52c3hz6A_
not modelled 98.4 17 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
53c2p32B_
not modelled 98.4 10 PDB header:chaperone
Chain: B: PDB Molecule:heat shock 70 kda protein a;
PDBTitle: crystal structure of the c-terminal 10 kda subdomain from c. elegans2 hsp70
54c3lofF_
not modelled 98.4 14 PDB header:chaperone
Chain: F: PDB Molecule:heat shock 70 kda protein 1;
PDBTitle: c-terminal domain of human heat shock 70kda protein 1b.
55c3gg4B_
not modelled 98.3 14 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
56d1ud0a_
not modelled 98.3 10 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain
Family:Heat shock protein 70kD (HSP70), C-terminal subdomain
57c1ud0B_
not modelled 98.0 10 PDB header:chaperone
Chain: B: PDB Molecule:70 kda heat-shock-like protein;
PDBTitle: crystal structure of the c-terminal 10-kda subdomain of hsc70
58c2nlxA_
not modelled 97.9 16 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
59c2qm1D_
not modelled 97.9 18 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
60d1e4ft1
not modelled 97.8 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
61c1nbwA_
not modelled 97.8 26 PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
62d2p3ra2
not modelled 97.8 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
63c3ifrB_
not modelled 97.7 19 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
64d1r59o2
not modelled 97.7 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
65d2hf3a1
not modelled 97.7 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
66c3gbtA_
not modelled 97.6 14 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
67d2fxua1
not modelled 97.6 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
68c2dpnB_
not modelled 97.6 16 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
69d1c0fa1
not modelled 97.6 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
70c3flcX_
not modelled 97.6 18 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
71c2cgkB_
not modelled 97.6 11 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
72c3jvpA_
not modelled 97.6 18 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
73c2d4wA_
not modelled 97.6 17 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
74c3g25B_
not modelled 97.6 19 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
75c1glbG_
not modelled 97.5 13 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
76c2zf5O_
not modelled 97.5 17 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
77d2ewsa1
not modelled 97.5 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
78c3i8bA_
not modelled 97.5 24 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
79c3ezwD_
not modelled 97.5 17 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
80c1xupO_
not modelled 97.5 17 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
81c2w40C_
not modelled 97.5 16 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
82d1yaga1
not modelled 97.4 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
83c3htvA_
not modelled 97.4 18 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
84c2floA_
not modelled 97.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
85c2ivoC_
not modelled 97.3 21 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
86c1z6rC_
not modelled 97.3 15 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
87d1nbwa3
not modelled 97.2 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
88d2d0oa3
not modelled 97.1 26 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
89c1t6dB_
not modelled 97.1 15 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
90c1z05A_
not modelled 97.0 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
91d1k8ka1
not modelled 96.9 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
92c3cerD_
not modelled 96.9 17 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
93c2ch5D_
not modelled 96.8 12 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
94c3hi0B_
not modelled 96.8 18 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
95c3mdqA_
not modelled 96.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
96c2ap1A_
not modelled 96.5 20 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
97c3cetA_
not modelled 96.3 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63
98c1zc6A_
not modelled 96.3 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
99c3vgkB_
not modelled 96.2 21 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
100c3r8eA_
not modelled 95.7 15 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
101c2hoeA_
not modelled 95.5 17 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
102d1sz2a1
not modelled 95.5 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
103c1woqB_
not modelled 95.4 26 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
104c2q2rA_
not modelled 94.8 18 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
105d2p3ra1
not modelled 94.6 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
106d1t6ca2
not modelled 94.5 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
107c3enoB_
not modelled 94.3 20 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
108c3h6eB_
not modelled 94.2 9 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
109c1xc3A_
not modelled 93.8 13 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
110c2gupA_
not modelled 93.8 17 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
111c3cqyA_
not modelled 93.8 17 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
112d1u6za3
not modelled 93.5 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
113c3en9B_
not modelled 92.7 16 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
114c3eo3B_
not modelled 92.4 18 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
115c3tsuA_
not modelled 92.0 19 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
116c3hm8D_
not modelled 91.9 13 PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
117c3aapA_
not modelled 91.6 23 PDB header:hydrolase
Chain: A: PDB Molecule:ectonucleoside triphosphate diphosphohydrolase i;
PDBTitle: crystal structure of lp1ntpdase from legionella pneumophila
118d2ap1a1
not modelled 91.6 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
119d1czan1
not modelled 91.1 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
120d1zc6a1
90.5 24 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0