Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	T	Q	W	P	S	P	A	K	L	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	T	L	Q	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	P	V	E	G	V
Secondary structure
SS confidence
Disorder		?	?																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	H	E	D	N	L	I	V	R	A	A	R	L	L	M	K	T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	M	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	W	Q	C	G	L	S	M	D	E	L	A	E	M	G	L	T	L	G	A	D	V	P	V	F	V	R	G	H	A	A	F	A	E	G	V	G	E	I	L	T	P	V	D	P	P	E	K	W	Y	L	V	A	H	P	G	V	S	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	P	V	I	F	K	D	P	E	L	P	R	N	T	P	K	R	S	I	E	T	L	L	K	C	E	F	S	N	D	C	E	V	I	A	R	K	R	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	P	S	R	L	T	G	T
Secondary structure
SS confidence
Disorder												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		G	A	C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W	L	N	G	F	V	A	K	G	A	N	L	S	P	L	H	R	A	M	L
Secondary structure
SS confidence
Disorder																																						?	?	?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oj4 chain B Region: 1 - 283 Aligned: 283 Modelled: 282 Confidence: 100.0% Identity: 98% PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol PDBTitle: ternary complex of2 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase Phyre2 PDB 1uek chain A Region: 3 - 271 Aligned: 255 Modelled: 263 Confidence: 100.0% Identity: 36% PDB header:transferase Chain: A: PDB Molecule:4-(cytidine 5'-diphospho)-2c-methyl-d-erythritol PDBTitle: crystal structure of 4-(cytidine 5'-diphospho)-2c-methyl-d-2 erythritol kinase Phyre2 PDB 2v34 chain B Region: 3 - 271 Aligned: 257 Modelled: 269 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2c-methyl-d-erythritol kinase; PDBTitle: ispe in complex with cytidine and ligand Phyre2 PDB 1oj4 chain A domain 1 Region: 1 - 163 Aligned: 163 Modelled: 162 Confidence: 100.0% Identity: 97% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: GHMP Kinase, N-terminal domain Phyre2 PDB 1fwl chain D Region: 1 - 274 Aligned: 256 Modelled: 261 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: D: PDB Molecule:homoserine kinase; PDBTitle: crystal structure of homoserine kinase Phyre2 PDB 1uek chain A domain 1 Region: 3 - 163 Aligned: 147 Modelled: 155 Confidence: 100.0% Identity: 44% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: GHMP Kinase, N-terminal domain Phyre2 PDB 3hul chain A Region: 2 - 276 Aligned: 251 Modelled: 262 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:homoserine kinase; PDBTitle: structure of putative homoserine kinase thrb from listeria2 monocytogenes Phyre2 PDB 2gs8 chain A Region: 3 - 272 Aligned: 260 Modelled: 249 Confidence: 100.0% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: structure of mevalonate pyrophosphate decarboxylase from streptococcus2 pyogenes Phyre2 PDB 2hfu chain B Region: 6 - 276 Aligned: 266 Modelled: 271 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate Phyre2 PDB 1kkh chain A Region: 2 - 274 Aligned: 264 Modelled: 269 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of the methanococcus jannaschii2 mevalonate kinase Phyre2 PDB 2x7i chain A Region: 2 - 270 Aligned: 258 Modelled: 265 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252 Phyre2 PDB 2hk3 chain A Region: 2 - 277 Aligned: 268 Modelled: 276 Confidence: 100.0% Identity: 15% PDB header:lyase Chain: A: PDB Molecule:diphosphomevalonate decarboxylase; PDBTitle: crystal structure of mevalonate diphosphate decarboxylase2 from staphylococcus aureus (orthorhombic form) Phyre2 PDB 2oi2 chain A Region: 2 - 273 Aligned: 248 Modelled: 268 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate Phyre2 PDB 2cz9 chain A Region: 3 - 271 Aligned: 257 Modelled: 264 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:probable galactokinase; PDBTitle: crystal structure of galactokinase from pyrococcus horikoshi Phyre2 PDB 3k17 chain A Region: 2 - 264 Aligned: 258 Modelled: 259 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:lin0012 protein; PDBTitle: crystal structure of a lin0012 protein from listeria innocua Phyre2 PDB 3lto chain B Region: 4 - 266 Aligned: 256 Modelled: 263 Confidence: 100.0% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:mevalonate diphosphate decarboxylase; PDBTitle: crystal structure of a mevalonate diphosphate decarboxylase2 from legionella pneumophila Phyre2 PDB 3k85 chain B Region: 3 - 277 Aligned: 261 Modelled: 265 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron Phyre2 PDB 2r42 chain A Region: 1 - 272 Aligned: 266 Modelled: 272 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: the biochemical and structural basis for feedback2 inhibition of mevalonate kinase and isoprenoid metabolism Phyre2 PDB 1pie chain A Region: 5 - 265 Aligned: 253 Modelled: 257 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:galactokinase; PDBTitle: crystal structure of lactococcus lactis galactokinase2 complexed with galactose Phyre2 PDB 1k47 chain F Region: 1 - 273 Aligned: 262 Modelled: 270 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: F: PDB Molecule:phosphomevalonate kinase; PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk) Phyre2 1 c1oj4B_ 2 c1uekA_ 3 c2v34B_ 4 d1oj4a1 5 c1fwlD_ 6 d1ueka1 7 c3hulA_ 8 c2gs8A_ 9 c2hfuB_ 10 c1kkhA_ 11 c2x7iA_ 12 c2hk3A_ 13 c2oi2A_ 14 c2cz9A_ 15 c3k17A_ 16 c3ltoB_ 17 c3k85B_ 18 c2r42A_ 19 c1pieA_ 20 c1k47F_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1oj4B_ 100.0 98 PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol PDBTitle: ternary complex of2 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase 2 c1uekA_ 100.0 36 PDB header:transferase Chain: A: PDB Molecule:4-(cytidine 5'-diphospho)-2c-methyl-d-erythritol PDBTitle: crystal structure of 4-(cytidine 5'-diphospho)-2c-methyl-d-2 erythritol kinase 3 c2v34B_ 100.0 30 PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2c-methyl-d-erythritol kinase; PDBTitle: ispe in complex with cytidine and ligand 4 d1oj4a1 100.0 97 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 5 c1fwlD_ 100.0 20 PDB header:transferase Chain: D: PDB Molecule:homoserine kinase; PDBTitle: crystal structure of homoserine kinase 6 d1ueka1 100.0 44 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 7 c3hulA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:homoserine kinase; PDBTitle: structure of putative homoserine kinase thrb from listeria2 monocytogenes 8 c2gs8A_ 100.0 14 PDB header:lyase Chain: A: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: structure of mevalonate pyrophosphate decarboxylase from streptococcus2 pyogenes 9 c2hfuB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 10 c1kkhA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of the methanococcus jannaschii2 mevalonate kinase 11 c2x7iA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252 12 c2hk3A_ 100.0 15 PDB header:lyase Chain: A: PDB Molecule:diphosphomevalonate decarboxylase; PDBTitle: crystal structure of mevalonate diphosphate decarboxylase2 from staphylococcus aureus (orthorhombic form) 13 c2oi2A_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate 14 c2cz9A_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:probable galactokinase; PDBTitle: crystal structure of galactokinase from pyrococcus horikoshi 15 c3k17A_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:lin0012 protein; PDBTitle: crystal structure of a lin0012 protein from listeria innocua 16 c3ltoB_ 100.0 16 PDB header:lyase Chain: B: PDB Molecule:mevalonate diphosphate decarboxylase; PDBTitle: crystal structure of a mevalonate diphosphate decarboxylase2 from legionella pneumophila 17 c3k85B_ 100.0 16 PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron 18 c2r42A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: the biochemical and structural basis for feedback2 inhibition of mevalonate kinase and isoprenoid metabolism 19 c1pieA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:galactokinase; PDBTitle: crystal structure of lactococcus lactis galactokinase2 complexed with galactose 20 c1k47F_ 100.0 16 PDB header:transferase Chain: F: PDB Molecule:phosphomevalonate kinase; PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk) 21 c1wuuA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:galactokinase; PDBTitle: crystal structure of human galactokinase complexed with2 mgamppnp and galactose 22 c2a2cA_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:n-acetylgalactosamine kinase; PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate 23 c2aj4B_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:galactokinase; PDBTitle: crystal structure of saccharomyces cerevisiae galactokinase2 in complex with galactose and mg:amppnp 24 d1oj4a2 not modelled 100.0 98 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE 25 d1h72c1 not modelled 100.0 20 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 26 d1kkha1 not modelled 99.9 20 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 27 c2hkeB_ not modelled 99.9 18 PDB header:lyase Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative; PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei 28 d1fi4a1 not modelled 99.9 17 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 29 d1piea1 not modelled 99.9 24 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 30 d1k47a1 not modelled 99.9 18 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 31 d1wuua1 not modelled 99.9 23 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 32 d1ueka2 not modelled 99.9 24 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE 33 d1s4ea1 not modelled 99.8 22 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 34 d1kvka1 not modelled 99.8 25 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:GHMP Kinase, N-terminal domain 35 d1h72c2 not modelled 99.7 14 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Homoserine kinase 36 c1fi4A_ not modelled 99.5 15 PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. 37 c3f0nB_ not modelled 99.1 15 PDB header:lyase Chain: B: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: mus musculus mevalonate pyrophosphate decarboxylase 38 d1kvka2 not modelled 98.6 14 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 39 d1k47a2 not modelled 98.6 12 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 40 d1kkha2 not modelled 98.4 17 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 41 d1s4ea2 not modelled 97.8 21 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 42 d1wuua2 not modelled 97.5 18 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 43 d1piea2 not modelled 97.4 15 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 44 c3mnfA_ not modelled 20.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pac2 family protein; PDBTitle: crystal structure of pac2 family protein from streptomyces avermitilis2 ma 45 d1xxaa_ not modelled 18.5 13 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 46 d1b4ba_ not modelled 15.8 17 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 47 c3gaaB_ not modelled 15.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ta1441; PDBTitle: the crystal structure of the protein with unknown function from2 thermoplasma acidophilum 48 d2p90a1 not modelled 14.4 10 Fold:Phosphorylase/hydrolase-like Superfamily:Cgl1923-like Family:Cgl1923-like 49 c2p90B_ not modelled 13.4 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 50 c3cagF_ not modelled 12.6 11 PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines. 51 c3fuxB_ not modelled 11.2 21 PDB header:transferase Chain: B: PDB Molecule:dimethyladenosine transferase; PDBTitle: t. thermophilus 16s rrna a1518 and a1519 methyltransferase (ksga) in2 complex with 5'-methylthioadenosine in space group p212121 52 c2wamB_ not modelled 10.9 21 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical alanine and leucine rich PDBTitle: crystal structure of mycobacterium tuberculosis unknown2 function protein rv2714 53 d2p5ma1 not modelled 10.9 13 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 54 c3e0dA_ not modelled 10.7 17 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 55 d1yrxa1 not modelled 10.2 11 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:BLUF domain 56 d1a6qa1 not modelled 8.5 35 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 57 d2byca1 not modelled 8.5 10 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:BLUF domain 58 c2hnhA_ not modelled 8.3 25 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii 59 c2diuA_ not modelled 8.1 13 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rrm domain of kiaa0430 protein 60 c3m05A_ not modelled 8.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 61 d1o51a_ not modelled 8.1 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:DUF190/COG1993 62 c2hfnJ_ not modelled 7.8 13 PDB header:electron transport Chain: J: PDB Molecule:synechocystis photoreceptor (slr1694); PDBTitle: crystal structures of the synechocystis photoreceptor slr1694 reveal2 distinct structural states related to signaling 63 d1mwqa_ not modelled 6.2 24 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YciI-like 64 c3v4gA_ not modelled 5.8 13 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 65 d1vkra_ not modelled 5.6 14 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 66 c1vkrA_ not modelled 5.6 14 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 67 d8ohma2 not modelled 5.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 68 d2gdwa1 not modelled 5.4 26 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Peptidyl carrier domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0