Email l.a.kelley@imperial.ac.uk Description P25907 Date Thu Jan 5 11:42:46 GMT 2012 Unique Job ID f8b7c037cfce4f3a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1hf2a1 42.4 32 Fold:Single-stranded right-handed beta-helix Superfamily:Cell-division inhibitor MinC, C-terminal domain Family:Cell-division inhibitor MinC, C-terminal domain 2 d1jqga1 23.7 20 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Pancreatic carboxypeptidases 3 c3st1A_ 23.4 21 PDB header:toxin Chain: A: PDB Molecule:necrosis-and ethylene-inducing protein; PDBTitle: crystal structure of necrosis and ethylene inducing protein 2 from the2 causal agent of cocoa's witches broom disease 4 c3f6oB_ 22.1 8 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 5 d1vjta1 19.3 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 6 c1bdgA_ 18.3 20 PDB header:hexokinase Chain: A: PDB Molecule:hexokinase; PDBTitle: hexokinase from schistosoma mansoni complexed with glucose 7 d1vi1a_ 17.2 19 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like 8 d1w36c1 16.3 42 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 9 c2e72A_ 14.2 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pogo transposable element with znf domain; PDBTitle: solution structure of the zinc finger domain of human2 kiaa0461 10 c3u80A_ 13.3 23 PDB header:unknown function Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii; PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum 11 c2wycB_ 12.9 15 PDB header:hydrolase Chain: B: PDB Molecule:acyl-homoserine lactone acylase pvdq subunit PDBTitle: the quorum quenching n-acyl homoserine lactone acylase pvdq2 in complex with 3-oxo-lauric acid 12 d1ls9a_ 12.5 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 13 c3bvsA_ 12.2 28 PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd 14 d1ef4a_ 11.5 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 15 d2q1ma1 10.9 15 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 16 c2ei5B_ 10.7 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ttha0061; PDBTitle: crystal structure of hypothetical protein(ttha0061) from thermus2 thermophilus 17 c1hf2A_ 10.3 19 PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima 18 d2k7ia1 10.1 27 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 19 c2k7iB_ 10.1 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0339 protein atu0232; PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223. 20 d1g3wa2 9.7 17 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 21 c1vjtA_ not modelled 9.0 19 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution 22 c3lwzC_ not modelled 8.8 32 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 23 c2dxbR_ not modelled 8.7 32 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 24 c2pmzN_ not modelled 8.5 50 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 25 d1uqra_ not modelled 8.4 36 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 26 c3s29C_ not modelled 8.4 22 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 27 d1bu8a1 not modelled 8.2 25 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Colipase-binding domain 28 d2fm9a1 not modelled 8.1 47 Fold:SipA N-terminal domain-like Superfamily:SipA N-terminal domain-like Family:SipA N-terminal domain-like 29 d2defa_ not modelled 8.1 19 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 30 d1twfj_ not modelled 8.1 50 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 31 d2isya2 not modelled 7.9 11 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 32 c3kipU_ not modelled 7.9 32 PDB header:lyase Chain: U: PDB Molecule:3-dehydroquinase, type ii; PDBTitle: crystal structure of type-ii 3-dehydroquinase from c. albicans 33 c2odlA_ not modelled 7.8 25 PDB header:cell adhesion Chain: A: PDB Molecule:adhesin; PDBTitle: crystal structure of the hmw1 secretion domain from2 haemophilus influenzae 34 c3on9B_ not modelled 7.8 33 PDB header:viral protein Chain: B: PDB Molecule:tumour necrosis factor receptor; PDBTitle: the secret domain from ectromelia virus 35 c2w91A_ not modelled 7.6 18 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase d; PDBTitle: structure of a streptococcus pneumoniae family 85 glycoside2 hydrolase, endo-d. 36 c2uygF_ not modelled 7.6 23 PDB header:lyase Chain: F: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus 37 d1h05a_ not modelled 7.5 23 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 38 d1vi0a1 not modelled 7.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 39 c2rngA_ not modelled 7.5 100 PDB header:antimicrobial protein Chain: A: PDB Molecule:big defensin; PDBTitle: solution structure of big defensin 40 d1gmua2 not modelled 7.4 47 Fold:Ferredoxin-like Superfamily:Urease metallochaperone UreE, C-terminal domain Family:Urease metallochaperone UreE, C-terminal domain 41 d2p7ja1 not modelled 7.3 13 Fold:Profilin-like Superfamily:Sensory domain-like Family:YkuI C-terminal domain-like 42 d1s57a_ not modelled 7.3 17 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 43 d2k49a1 not modelled 7.3 25 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 44 c3n8kG_ not modelled 6.9 23 PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid 45 d1h3ga1 not modelled 6.8 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 46 d2fm8c1 not modelled 6.8 47 Fold:SipA N-terminal domain-like Superfamily:SipA N-terminal domain-like Family:SipA N-terminal domain-like 47 d1mzha_ not modelled 6.8 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 48 c3gioA_ not modelled 6.6 45 PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the tnf-alpha inducing protein (tip2 alpha) from helicobacter pylori 49 d2jmua1 not modelled 6.6 45 Fold:CYTH-like phosphatases Superfamily:CYTH-like phosphatases Family:CYTH domain 50 c3e0zB_ not modelled 6.6 23 PDB header:unknown function Chain: B: PDB Molecule:protein of unknown function; PDBTitle: crystal structure of a putative imidazole glycerol phosphate synthase2 homolog (eubrec_1070) from eubacterium rectale at 1.75 a resolution 51 c3gdbA_ not modelled 6.6 17 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein spr0440; PDBTitle: crystal structure of spr0440 glycoside hydrolase domain,2 endo-d from streptococcus pneumoniae r6 52 d1sg5a1 not modelled 6.5 20 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:Rof-like 53 d1bdga2 not modelled 6.5 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 54 c1qhaA_ not modelled 6.4 24 PDB header:transferase Chain: A: PDB Molecule:protein (hexokinase); PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp 55 c2po4A_ not modelled 6.4 29 PDB header:transferase Chain: A: PDB Molecule:virion rna polymerase; PDBTitle: x-ray crystal structure of polymerase domain of the2 bacteriophage n4 virion rna polymerase 56 c2l5rA_ not modelled 6.3 100 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide alyteserin-1c; PDBTitle: conformational and membrane interactins studies of antimicrobial2 peptide alyteserin-1c 57 c1s1iA_ not modelled 6.3 15 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 58 c2zkr5_ not modelled 6.3 33 PDB header:ribosomal protein/rna Chain: 5: PDB Molecule:60s ribosomal protein l10a; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 59 d1eara2 not modelled 6.3 27 Fold:Ferredoxin-like Superfamily:Urease metallochaperone UreE, C-terminal domain Family:Urease metallochaperone UreE, C-terminal domain 60 d1lmea_ not modelled 6.2 26 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 61 d1g47a2 not modelled 6.2 32 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 62 d3bbba1 not modelled 6.2 15 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 63 c3sojA_ not modelled 6.1 58 PDB header:cell adhesion Chain: A: PDB Molecule:pile; PDBTitle: francisella tularensis pilin pile 64 c2w3tA_ not modelled 6.0 19 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: chloro complex of the ni-form of e.coli deformylase 65 d2az3a1 not modelled 6.0 17 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 66 c3dgpA_ not modelled 6.0 30 PDB header:transcription Chain: A: PDB Molecule:rna polymerase ii transcription factor b subunit 2; PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2 67 d1gtza_ not modelled 5.8 40 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 68 d1c6ra_ not modelled 5.8 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 69 d1txla_ not modelled 5.8 21 Fold:Lipocalins Superfamily:Lipocalins Family:Hypothetical protein YodA 70 c1txlA_ not modelled 5.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:metal-binding protein yoda; PDBTitle: crystal structure of metal-binding protein yoda from e.2 coli, pfam duf149 71 d3bl2a1 not modelled 5.7 31 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 72 d1u7na_ not modelled 5.7 18 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like 73 d1pd0a1 not modelled 5.7 27 Fold:ERP29 C domain-like Superfamily:Helical domain of Sec23/24 Family:Helical domain of Sec23/24 74 d1rlra1 not modelled 5.7 16 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 75 c1v4sA_ not modelled 5.6 22 PDB header:transferase Chain: A: PDB Molecule:glucokinase isoform 2; PDBTitle: crystal structure of human glucokinase 76 d3c07a1 not modelled 5.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 77 d2c4va1 not modelled 5.6 25 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 78 c2i5nH_ not modelled 5.6 40 PDB header:photosynthesis Chain: H: PDB Molecule:reaction center protein h chain; PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique 79 d1rzhh1 not modelled 5.5 53 Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain 80 c1eysH_ not modelled 5.5 24 PDB header:electron transport Chain: H: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 81 c3i3lA_ not modelled 5.5 37 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 82 c2ew7A_ not modelled 5.5 23 PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of helicobacter pylori peptide deformylase 83 d1ufya_ not modelled 5.5 16 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 84 d1wlfa1 not modelled 5.5 63 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 85 c3h43F_ not modelled 5.5 33 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 86 c3c8iA_ not modelled 5.5 27 PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: crystal structure of a putative membrane protein from corynebacterium2 diphtheriae 87 c3fk2B_ not modelled 5.4 13 PDB header:signaling protein, hydrolase activator Chain: B: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: crystal structure of the rhogap domain of human2 glucocorticoid receptor dna-binding factor 1 88 d2ctda1 not modelled 5.4 29 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 89 c3kboB_ not modelled 5.4 18 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxylate/hydroxypyruvate reductase a; PDBTitle: 2.14 angstrom crystal structure of putative oxidoreductase (ycdw) from2 salmonella typhimurium in complex with nadp 90 d1t33a1 not modelled 5.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 91 d1v0ea2 not modelled 5.3 40 Fold:Triple-stranded beta-helix Superfamily:Phage fibre proteins Family:Endo-alpha-sialidase 92 d1l5ja3 not modelled 5.3 17 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 93 c3fn2A_ not modelled 5.3 22 PDB header:transferase Chain: A: PDB Molecule:putative sensor histidine kinase domain; PDBTitle: crystal structure of a putative sensor histidine kinase domain from2 clostridium symbiosum atcc 14940 94 d1gqoa_ not modelled 5.3 27 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 95 d1dwua_ not modelled 5.3 23 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 96 d2fbqa1 not modelled 5.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 97 d1ix1a_ not modelled 5.3 23 Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase 98 d1fqva1 not modelled 5.2 55 Fold:F-box domain Superfamily:F-box domain Family:F-box domain 99 c3gnzP_ not modelled 5.2 22 PDB header:toxin Chain: P: PDB Molecule:25 kda protein elicitor; PDBTitle: toxin fold for microbial attack and plant defense