Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	V	I	Y	Q	T	T	I	T	R	I	G	A	S	A	I	D	A	L	S	D	Q	M	L	I	T	F	R	E	G	A	P	A	D	L	E	E	Y	C	F	I	H	C	H	G	E	L	K	G	A	L	H	P	G	L	Q	F	S	L
Secondary structure
SS confidence
Disorder		?	?																	?																												?	?	?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	Q	H	R	Y	P	V	T	A	V	G	S	V	A	E	D	N	L	R	E	L	G	H	V	T	L	R	F	D	G	L	N	E	A	E	F	P	G	T	V	H	V	A	G	P	V	P	D	D	I	A	P	G	S	V	L	K	F	E	S
Secondary structure
SS confidence
Disorder																																		?	?	?																		?
Disorder confidence
		.	.	.
Sequence		V	K	E
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2f9h chain A domain 1 Region: 3 - 118 Aligned: 115 Modelled: 116 Confidence: 100.0% Identity: 30% Fold: PTSIIA/GutA-like Superfamily: PTSIIA/GutA-like Family: PTSIIA/GutA-like Phyre2 PDB 2xdp chain A Region: 5 - 109 Aligned: 93 Modelled: 105 Confidence: 74.9% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c Phyre2 PDB 1k0h chain A Region: 41 - 71 Aligned: 31 Modelled: 31 Confidence: 37.8% Identity: 16% Fold: Phage tail proteins Superfamily: Phage tail proteins Family: gpFII-like Phyre2 PDB 2gp4 chain A domain 1 Region: 49 - 119 Aligned: 68 Modelled: 71 Confidence: 37.7% Identity: 18% Fold: The "swivelling" beta/beta/alpha domain Superfamily: LeuD/IlvD-like Family: IlvD/EDD C-terminal domain-like Phyre2 PDB 2qqs chain B Region: 4 - 97 Aligned: 82 Modelled: 94 Confidence: 30.4% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide Phyre2 PDB 1p9k chain A Region: 45 - 69 Aligned: 25 Modelled: 25 Confidence: 27.8% Identity: 20% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: YbcJ-like Phyre2 PDB 2jql chain A Region: 83 - 118 Aligned: 36 Modelled: 36 Confidence: 27.1% Identity: 17% PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 Phyre2 PDB 3vg8 chain F Region: 76 - 92 Aligned: 17 Modelled: 17 Confidence: 26.1% Identity: 41% PDB header:unknown function Chain: F: PDB Molecule:hypothetical protein tthb210; PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8 Phyre2 PDB 3a5z chain F Region: 50 - 70 Aligned: 21 Modelled: 21 Confidence: 26.0% Identity: 29% PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p Phyre2 PDB 1ueb chain A domain 1 Region: 50 - 70 Aligned: 21 Modelled: 21 Confidence: 23.9% Identity: 14% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 PDB 3cpf chain B Region: 43 - 68 Aligned: 26 Modelled: 26 Confidence: 23.5% Identity: 12% PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a Phyre2 PDB 2fhd chain A Region: 65 - 118 Aligned: 49 Modelled: 54 Confidence: 22.9% Identity: 22% PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains Phyre2 PDB 2g50 chain A domain 1 Region: 21 - 72 Aligned: 52 Modelled: 52 Confidence: 22.2% Identity: 12% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 2vv5 chain A domain 1 Region: 48 - 71 Aligned: 24 Modelled: 24 Confidence: 20.9% Identity: 21% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Mechanosensitive channel protein MscS (YggB), middle domain Phyre2 PDB 1kzl chain A domain 2 Region: 34 - 120 Aligned: 69 Modelled: 76 Confidence: 20.8% Identity: 12% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Riboflavin synthase Phyre2 PDB 1xtd chain A Region: 43 - 70 Aligned: 28 Modelled: 28 Confidence: 20.5% Identity: 18% PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a Phyre2 PDB 2pp6 chain A domain 1 Region: 55 - 70 Aligned: 16 Modelled: 16 Confidence: 20.5% Identity: 25% Fold: Phage tail proteins Superfamily: Phage tail proteins Family: gpFII-like Phyre2 PDB 1k8g chain A domain 2 Region: 99 - 122 Aligned: 24 Modelled: 24 Confidence: 20.3% Identity: 13% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Single strand DNA-binding domain, SSB Phyre2 PDB 1i8d chain A domain 2 Region: 34 - 120 Aligned: 69 Modelled: 76 Confidence: 19.2% Identity: 12% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Riboflavin synthase domain-like Family: Riboflavin synthase Phyre2 PDB 2fph chain X Region: 53 - 98 Aligned: 46 Modelled: 46 Confidence: 19.1% Identity: 11% PDB header:dna binding protein Chain: X: PDB Molecule:ylmh; PDBTitle: cell division protein ylmh from streptococcus pneumoniae Phyre2 1 d2f9ha1 2 c2xdpA_ 3 d1k0ha_ 4 d2gp4a1 5 c2qqsB_ 6 d1p9ka_ 7 c2jqlA_ 8 c3vg8F_ 9 c3a5zF_ 10 d1ueba1 11 c3cpfB_ 12 c2fhdA_ 13 d2g50a1 14 d2vv5a1 15 d1kzla2 16 c1xtdA_ 17 d2pp6a1 18 d1k8ga2 19 d1i8da2 20 c2fphX_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2f9ha1 100.0 30 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 2 c2xdpA_ 74.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 3 d1k0ha_ 37.8 16 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 4 d2gp4a1 37.7 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 5 c2qqsB_ 30.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 6 d1p9ka_ 27.8 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 7 c2jqlA_ 27.1 17 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 8 c3vg8F_ 26.1 41 PDB header:unknown function Chain: F: PDB Molecule:hypothetical protein tthb210; PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8 9 c3a5zF_ 26.0 29 PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p 10 d1ueba1 23.9 14 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 11 c3cpfB_ 23.5 12 PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a 12 c2fhdA_ 22.9 22 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 13 d2g50a1 22.2 12 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 14 d2vv5a1 20.9 21 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 15 d1kzla2 20.8 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 16 c1xtdA_ 20.5 18 PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a 17 d2pp6a1 20.5 25 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 18 d1k8ga2 20.3 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 19 d1i8da2 19.2 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 20 c2fphX_ 19.1 11 PDB header:dna binding protein Chain: X: PDB Molecule:ylmh; PDBTitle: cell division protein ylmh from streptococcus pneumoniae 21 c3hksB_ not modelled 18.8 14 PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana 22 c1bkbA_ not modelled 18.3 19 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 5a; PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum 23 d1liua1 not modelled 17.3 10 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 24 c3treA_ not modelled 17.2 10 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii 25 d1pkma1 not modelled 16.8 12 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 26 c2v43A_ not modelled 16.7 12 PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli 27 d1jb7a2 not modelled 16.7 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 28 c3degC_ not modelled 16.5 19 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 29 c3er0A_ not modelled 16.4 7 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae 30 d2cqaa1 not modelled 16.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 31 c2jkdB_ not modelled 15.8 22 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 32 d1a3xa1 not modelled 14.5 7 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 33 d1mzka_ not modelled 14.4 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 34 c2eifA_ not modelled 13.7 14 PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii 35 c3igzB_ not modelled 13.5 28 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 36 c2kzbA_ not modelled 13.5 18 PDB header:protein transport Chain: A: PDB Molecule:autophagy-related protein 19; PDBTitle: solution structure of alpha-mannosidase binding domain of atg19 37 d1udxa3 not modelled 13.1 11 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 38 d1bdoa_ not modelled 12.8 21 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 39 c1r21A_ not modelled 12.7 11 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 40 d2c78a1 not modelled 12.3 22 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 41 c2z14A_ not modelled 12.1 12 PDB header:signaling protein Chain: A: PDB Molecule:ef-hand domain-containing family member c2; PDBTitle: crystal structure of the n-terminal duf1126 in human ef-2 hand domain containing 2 protein 42 d1e0ta1 not modelled 11.9 18 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 43 d2dy1a1 not modelled 11.8 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 44 d2affa1 not modelled 11.4 11 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 45 c1uebB_ not modelled 11.2 14 PDB header:rna binding protein Chain: B: PDB Molecule:elongation factor p; PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8 46 c2vv5D_ not modelled 11.1 21 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 47 d1njjb1 not modelled 11.1 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 48 d1awwa_ not modelled 11.1 9 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 49 c3gqsB_ not modelled 11.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 50 d1kzla1 not modelled 10.9 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 51 c2jpeA_ not modelled 10.9 25 PDB header:transcription Chain: A: PDB Molecule:nuclear inhibitor of protein phosphatase 1; PDBTitle: fha domain of nipp1 52 d1s04a_ not modelled 10.6 24 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 53 c3oyyA_ not modelled 10.5 5 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p 54 d2phcb1 not modelled 10.5 29 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 55 d1gl4a1 not modelled 10.3 18 Fold:GFP-like Superfamily:GFP-like Family:Domain G2 of nidogen-1 56 c2phcB_ not modelled 10.3 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 57 d1f60a1 not modelled 10.3 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 58 d1o8ba1 not modelled 10.2 29 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 59 c1i8dB_ not modelled 10.1 19 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of riboflavin synthase 60 c1a3wB_ not modelled 9.7 7 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+ 61 d1mkfa_ not modelled 9.6 21 Fold:Viral chemokine binding protein m3 Superfamily:Viral chemokine binding protein m3 Family:Viral chemokine binding protein m3 62 c3elsA_ not modelled 9.6 22 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 63 c1iz6B_ not modelled 9.6 14 PDB header:biosynthetic protein Chain: B: PDB Molecule:initiation factor 5a; PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii 64 c3poaA_ not modelled 9.5 28 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 65 d1yjma1 not modelled 9.0 35 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 66 d2g1la1 not modelled 8.8 17 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 67 c2kzkA_ not modelled 8.8 14 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein yol083w; PDBTitle: solution structure of alpha-mannosidase binding domain of atg34 68 c1ybyB_ not modelled 8.6 24 PDB header:translation Chain: B: PDB Molecule:translation elongation factor p; PDBTitle: conserved hypothetical protein cth-95 from clostridium2 thermocellum 69 c3fm8A_ not modelled 8.3 29 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 70 d1pkla1 not modelled 8.3 12 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 71 d1bkba1 not modelled 8.3 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 72 d2qqra2 not modelled 8.2 17 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 73 c2zpmA_ not modelled 8.1 13 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 74 c3e20A_ not modelled 8.1 19 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-binding PDBTitle: crystal structure of s.pombe erf1/erf3 complex 75 d2g82a1 not modelled 7.8 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 76 c1h4uA_ not modelled 7.7 20 PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1 77 d1gtta1 not modelled 7.5 12 Fold:FAH Superfamily:FAH Family:FAH 78 d2zjrm1 not modelled 7.4 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 79 d3etja1 not modelled 7.4 44 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 80 d2p13a1 not modelled 7.4 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 81 d1o8bb1 not modelled 7.3 31 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 82 c3gmgB_ not modelled 7.3 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 83 d2eifa1 not modelled 7.3 14 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 84 c2p5dA_ not modelled 7.3 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0310 protein mjecl36; PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661 85 c3gqjA_ not modelled 7.2 25 PDB header:unknown function Chain: A: PDB Molecule:cell inhibiting factor (cif); PDBTitle: crystal structure of cell inhibiting factor (cif) from photorhabdus2 luminescens 86 d2brfa1 not modelled 7.1 29 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 87 d1iz6a1 not modelled 7.0 14 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 88 c3llbA_ not modelled 7.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1 89 d3deda1 not modelled 7.0 11 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 90 c1yj5C_ not modelled 7.0 35 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 91 d2cowa1 not modelled 6.9 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 92 d1f3ta1 not modelled 6.7 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 93 c3hx1B_ not modelled 6.6 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 94 d2plia1 not modelled 6.5 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 95 d2o3ga1 not modelled 6.5 17 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 96 c3cfuA_ not modelled 6.5 28 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 97 d2toda1 not modelled 6.5 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 98 d2o1ra1 not modelled 6.4 11 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 99 d2ff4a3 not modelled 6.4 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0