Phyre 2 Results for P05706

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Email | l.a.kelley@imperial.ac.uk
Description | P05706
Date | Thu Jan 5 10:58:48 GMT 2012
Unique Job ID | f6e897e40f881088

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2f9ha1
Top template information
Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 93%
115 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

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Sequence |  | M | T | V | I | Y | Q | T | T | I | T | R | I | G | A | S | A | I | D | A | L | S | D | Q | M | L | I | T | F | R | E | G | A | P | A | D | L | E | E | Y | C | F | I | H | C | H | G | E | L | K | G | A | L | H | P | G | L | Q | F | S | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | Q | H | R | Y | P | V | T | A | V | G | S | V | A | E | D | N | L | R | E | L | G | H | V | T | L | R | F | D | G | L | N | E | A | E | F | P | G | T | V | H | V | A | G | P | V | P | D | D | I | A | P | G | S | V | L | K | F | E | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | .
Sequence |  | V | K | E
Secondary structure |  |  |  |
SS confidence |  |  |  |
Disorder |  | ? | ? | ?
Disorder confidence |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2f9ha1 |

### PDB 2f9h chain A domain 1

Region: 3 - 118
Aligned: 115
Modelled: 116
Confidence: 100.0%
Identity: 30%
Fold: PTSIIA/GutA-like
Superfamily: PTSIIA/GutA-like
Family: PTSIIA/GutA-like

Phyre2
2 |
| c2xdpA_ |

### PDB 2xdp chain A

Region: 5 - 109
Aligned: 93
Modelled: 105
Confidence: 74.9%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c

Phyre2
3 |
| d1k0ha_ |

### PDB 1k0h chain A

Region: 41 - 71
Aligned: 31
Modelled: 31
Confidence: 37.8%
Identity: 16%
Fold: Phage tail proteins
Superfamily: Phage tail proteins
Family: gpFII-like

Phyre2
4 |
| d2gp4a1 |

### PDB 2gp4 chain A domain 1

Region: 49 - 119
Aligned: 68
Modelled: 71
Confidence: 37.7%
Identity: 18%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: LeuD/IlvD-like
Family: IlvD/EDD C-terminal domain-like

Phyre2
5 |
| c2qqsB_ |

### PDB 2qqs chain B

Region: 4 - 97
Aligned: 82
Modelled: 94
Confidence: 30.4%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide

Phyre2
6 |
| d1p9ka_ |

### PDB 1p9k chain A

Region: 45 - 69
Aligned: 25
Modelled: 25
Confidence: 27.8%
Identity: 20%
Fold: Alpha-L RNA-binding motif
Superfamily: Alpha-L RNA-binding motif
Family: YbcJ-like

Phyre2
7 |
| c2jqlA_ |

### PDB 2jql chain A

Region: 83 - 118
Aligned: 36
Modelled: 36
Confidence: 27.1%
Identity: 17%
PDB header:cell cycle
Chain: A: PDB Molecule:dna damage response protein kinase dun1;
PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1

Phyre2
8 |
| c3vg8F_ |

### PDB 3vg8 chain F

Region: 76 - 92
Aligned: 17
Modelled: 17
Confidence: 26.1%
Identity: 41%
PDB header:unknown function
Chain: F: PDB Molecule:hypothetical protein tthb210;
PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8

Phyre2
9 |
| c3a5zF_ |

### PDB 3a5z chain F

Region: 50 - 70
Aligned: 21
Modelled: 21
Confidence: 26.0%
Identity: 29%
PDB header:ligase
Chain: F: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p

Phyre2
10 |
| d1ueba1 |

### PDB 1ueb chain A domain 1

Region: 50 - 70
Aligned: 21
Modelled: 21
Confidence: 23.9%
Identity: 14%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: eIF5a N-terminal domain-like

Phyre2
11 |
| c3cpfB_ |

### PDB 3cpf chain B

Region: 43 - 68
Aligned: 26
Modelled: 26
Confidence: 23.5%
Identity: 12%
PDB header:cell cycle
Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1;
PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a

Phyre2
12 |
| c2fhdA_ |

### PDB 2fhd chain A

Region: 65 - 118
Aligned: 49
Modelled: 54
Confidence: 22.9%
Identity: 22%
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains

Phyre2
13 |
| d2g50a1 |

### PDB 2g50 chain A domain 1

Region: 21 - 72
Aligned: 52
Modelled: 52
Confidence: 22.2%
Identity: 12%
Fold: PK beta-barrel domain-like
Superfamily: PK beta-barrel domain-like
Family: Pyruvate kinase beta-barrel domain

Phyre2
14 |
| d2vv5a1 |

### PDB 2vv5 chain A domain 1

Region: 48 - 71
Aligned: 24
Modelled: 24
Confidence: 20.9%
Identity: 21%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Mechanosensitive channel protein MscS (YggB), middle domain

Phyre2
15 |
| d1kzla2 |

### PDB 1kzl chain A domain 2

Region: 34 - 120
Aligned: 69
Modelled: 76
Confidence: 20.8%
Identity: 12%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin synthase domain-like
Family: Riboflavin synthase

Phyre2
16 |
| c1xtdA_ |

### PDB 1xtd chain A

Region: 43 - 70
Aligned: 28
Modelled: 28
Confidence: 20.5%
Identity: 18%
PDB header:translation
Chain: A: PDB Molecule:eukaryotic initiation factor 5a;
PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a

Phyre2
17 |
| d2pp6a1 |

### PDB 2pp6 chain A domain 1

Region: 55 - 70
Aligned: 16
Modelled: 16
Confidence: 20.5%
Identity: 25%
Fold: Phage tail proteins
Superfamily: Phage tail proteins
Family: gpFII-like

Phyre2
18 |
| d1k8ga2 |

### PDB 1k8g chain A domain 2

Region: 99 - 122
Aligned: 24
Modelled: 24
Confidence: 20.3%
Identity: 13%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Single strand DNA-binding domain, SSB

Phyre2
19 |
| d1i8da2 |

### PDB 1i8d chain A domain 2

Region: 34 - 120
Aligned: 69
Modelled: 76
Confidence: 19.2%
Identity: 12%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin synthase domain-like
Family: Riboflavin synthase

Phyre2
20 |
| c2fphX_ |

### PDB 2fph chain X

Region: 53 - 98
Aligned: 46
Modelled: 46
Confidence: 19.1%
Identity: 11%
PDB header:dna binding protein
Chain: X: PDB Molecule:ylmh;
PDBTitle: cell division protein ylmh from streptococcus pneumoniae

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2f9ha1 |
|  | 100.0 | 30 | Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like
2 | c2xdpA_ |
|  | 74.9 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c
3 | d1k0ha_ |
|  | 37.8 | 16 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like
4 | d2gp4a1 |
|  | 37.7 | 18 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like
5 | c2qqsB_ |
|  | 30.4 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
6 | d1p9ka_ |
|  | 27.8 | 20 | Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like
7 | c2jqlA_ |
|  | 27.1 | 17 | PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1
8 | c3vg8F_ |
|  | 26.1 | 41 | PDB header:unknown function Chain: F: PDB Molecule:hypothetical protein tthb210; PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8
9 | c3a5zF_ |
|  | 26.0 | 29 | PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
10 | d1ueba1 |
|  | 23.9 | 14 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
11 | c3cpfB_ |
|  | 23.5 | 12 | PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a
12 | c2fhdA_ |
|  | 22.9 | 22 | PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains
13 | d2g50a1 |
|  | 22.2 | 12 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
14 | d2vv5a1 |
|  | 20.9 | 21 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain
15 | d1kzla2 |
|  | 20.8 | 12 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase
16 | c1xtdA_ |
|  | 20.5 | 18 | PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a
17 | d2pp6a1 |
|  | 20.5 | 25 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like
18 | d1k8ga2 |
|  | 20.3 | 13 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
19 | d1i8da2 |
|  | 19.2 | 12 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase
20 | c2fphX_ |
|  | 19.1 | 11 | PDB header:dna binding protein Chain: X: PDB Molecule:ylmh; PDBTitle: cell division protein ylmh from streptococcus pneumoniae
21 | c3hksB_ |
| not modelled | 18.8 | 14 | PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana
22 | c1bkbA_ |
| not modelled | 18.3 | 19 | PDB header:translation Chain: A: PDB Molecule:translation initiation factor 5a; PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum
23 | d1liua1 |
| not modelled | 17.3 | 10 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
24 | c3treA_ |
| not modelled | 17.2 | 10 | PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii
25 | d1pkma1 |
| not modelled | 16.8 | 12 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
26 | c2v43A_ |
| not modelled | 16.7 | 12 | PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
27 | d1jb7a2 |
| not modelled | 16.7 | 13 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB
28 | c3degC_ |
| not modelled | 16.5 | 19 | PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
29 | c3er0A_ |
| not modelled | 16.4 | 7 | PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae
30 | d2cqaa1 |
| not modelled | 16.1 | 13 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain
31 | c2jkdB_ |
| not modelled | 15.8 | 22 | PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex
32 | d1a3xa1 |
| not modelled | 14.5 | 7 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
33 | d1mzka_ |
| not modelled | 14.4 | 11 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
34 | c2eifA_ |
| not modelled | 13.7 | 14 | PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii
35 | c3igzB_ |
| not modelled | 13.5 | 28 | PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration
36 | c2kzbA_ |
| not modelled | 13.5 | 18 | PDB header:protein transport Chain: A: PDB Molecule:autophagy-related protein 19; PDBTitle: solution structure of alpha-mannosidase binding domain of atg19
37 | d1udxa3 |
| not modelled | 13.1 | 11 | Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain
38 | d1bdoa_ |
| not modelled | 12.8 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
39 | c1r21A_ |
| not modelled | 12.7 | 11 | PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain
40 | d2c78a1 |
| not modelled | 12.3 | 22 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
41 | c2z14A_ |
| not modelled | 12.1 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:ef-hand domain-containing family member c2; PDBTitle: crystal structure of the n-terminal duf1126 in human ef-2 hand domain containing 2 protein
42 | d1e0ta1 |
| not modelled | 11.9 | 18 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
43 | d2dy1a1 |
| not modelled | 11.8 | 25 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
44 | d2affa1 |
| not modelled | 11.4 | 11 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
45 | c1uebB_ |
| not modelled | 11.2 | 14 | PDB header:rna binding protein Chain: B: PDB Molecule:elongation factor p; PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8
46 | c2vv5D_ |
| not modelled | 11.1 | 21 | PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs
47 | d1njjb1 |
| not modelled | 11.1 | 22 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like
48 | d1awwa_ |
| not modelled | 11.1 | 9 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
49 | c3gqsB_ |
| not modelled | 11.0 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis
50 | d1kzla1 |
| not modelled | 10.9 | 12 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase
51 | c2jpeA_ |
| not modelled | 10.9 | 25 | PDB header:transcription Chain: A: PDB Molecule:nuclear inhibitor of protein phosphatase 1; PDBTitle: fha domain of nipp1
52 | d1s04a_ |
| not modelled | 10.6 | 24 | Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain
53 | c3oyyA_ |
| not modelled | 10.5 | 5 | PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p
54 | d2phcb1 |
| not modelled | 10.5 | 29 | Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like
55 | d1gl4a1 |
| not modelled | 10.3 | 18 | Fold:GFP-like Superfamily:GFP-like Family:Domain G2 of nidogen-1
56 | c2phcB_ |
| not modelled | 10.3 | 29 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
57 | d1f60a1 |
| not modelled | 10.3 | 25 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
58 | d1o8ba1 |
| not modelled | 10.2 | 29 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
59 | c1i8dB_ |
| not modelled | 10.1 | 19 | PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of riboflavin synthase
60 | c1a3wB_ |
| not modelled | 9.7 | 7 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
61 | d1mkfa_ |
| not modelled | 9.6 | 21 | Fold:Viral chemokine binding protein m3 Superfamily:Viral chemokine binding protein m3 Family:Viral chemokine binding protein m3
62 | c3elsA_ |
| not modelled | 9.6 | 22 | PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204
63 | c1iz6B_ |
| not modelled | 9.6 | 14 | PDB header:biosynthetic protein Chain: B: PDB Molecule:initiation factor 5a; PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii
64 | c3poaA_ |
| not modelled | 9.5 | 28 | PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions
65 | d1yjma1 |
| not modelled | 9.0 | 35 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
66 | d2g1la1 |
| not modelled | 8.8 | 17 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
67 | c2kzkA_ |
| not modelled | 8.8 | 14 | PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein yol083w; PDBTitle: solution structure of alpha-mannosidase binding domain of atg34
68 | c1ybyB_ |
| not modelled | 8.6 | 24 | PDB header:translation Chain: B: PDB Molecule:translation elongation factor p; PDBTitle: conserved hypothetical protein cth-95 from clostridium2 thermocellum
69 | c3fm8A_ |
| not modelled | 8.3 | 29 | PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target)
70 | d1pkla1 |
| not modelled | 8.3 | 12 | Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain
71 | d1bkba1 |
| not modelled | 8.3 | 19 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
72 | d2qqra2 |
| not modelled | 8.2 | 17 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain
73 | c2zpmA_ |
| not modelled | 8.1 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b
74 | c3e20A_ |
| not modelled | 8.1 | 19 | PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-binding PDBTitle: crystal structure of s.pombe erf1/erf3 complex
75 | d2g82a1 |
| not modelled | 7.8 | 12 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
76 | c1h4uA_ |
| not modelled | 7.7 | 20 | PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1
77 | d1gtta1 |
| not modelled | 7.5 | 12 | Fold:FAH Superfamily:FAH Family:FAH
78 | d2zjrm1 |
| not modelled | 7.4 | 19 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19
79 | d3etja1 |
| not modelled | 7.4 | 44 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
80 | d2p13a1 |
| not modelled | 7.4 | 16 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
81 | d1o8bb1 |
| not modelled | 7.3 | 31 | Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
82 | c3gmgB_ |
| not modelled | 7.3 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis
83 | d2eifa1 |
| not modelled | 7.3 | 14 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
84 | c2p5dA_ |
| not modelled | 7.3 | 32 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0310 protein mjecl36; PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661
85 | c3gqjA_ |
| not modelled | 7.2 | 25 | PDB header:unknown function Chain: A: PDB Molecule:cell inhibiting factor (cif); PDBTitle: crystal structure of cell inhibiting factor (cif) from photorhabdus2 luminescens
86 | d2brfa1 |
| not modelled | 7.1 | 29 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain
87 | d1iz6a1 |
| not modelled | 7.0 | 14 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
88 | c3llbA_ |
| not modelled | 7.0 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
89 | d3deda1 |
| not modelled | 7.0 | 11 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
90 | c1yj5C_ |
| not modelled | 7.0 | 35 | PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
91 | d2cowa1 |
| not modelled | 6.9 | 29 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
92 | d1f3ta1 |
| not modelled | 6.7 | 22 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like
93 | c3hx1B_ |
| not modelled | 6.6 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a
94 | d2plia1 |
| not modelled | 6.5 | 16 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
95 | d2o3ga1 |
| not modelled | 6.5 | 17 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
96 | c3cfuA_ |
| not modelled | 6.5 | 28 | PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562
97 | d2toda1 |
| not modelled | 6.5 | 18 | Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like
98 | d2o1ra1 |
| not modelled | 6.4 | 11 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
99 | d2ff4a3 |
| not modelled | 6.4 | 19 | Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0