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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: d1mkfa_

Fold library idFoldSuperfamilyFamily
d1mkfa_Viral chemokine binding protein m3Viral chemokine binding protein m3Viral chemokine binding protein m3


Added to library: Tue Mar 16 11:55:32 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEE
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Known secondary structure (DSSP)

S



TTTSTTSSS

SST
TTGGGGG
S
GG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LGQEIITGRLPFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYM
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Known secondary structure (DSSP) GT



SS



TTS




SS

SS



SS

GGGTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TVWMIDIPKSYVDVGMLTRATFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNS
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Known secondary structure (DSSP) GGGSSTT
SS

TT
TT
TTS

B

STTSSG
 .........220.........230.........240.........250.........260.........270.........280
Sequence ARYSTSKFCEVDGCTAETGMEKMSLLTPFGGPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLT
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Known secondary structure (DSSP) GGGSSSTTTTTTT

GGGTS


S
TTS
SS
ST
SS




S

GGG

 .........290.........300.........310.........320.........330.........340.........350
Sequence SPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTSTSSEQCPIRLVEGQSQNVLQVRVAPTSMPN
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Known secondary structure (DSSP) S






TTS



TT


SS


SSTT
GGGGGG
 .........360.........370.
Sequence LVGVSLMLEGQQYRLEYFGDH
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Known secondary structure (DSSP) TTSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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