Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP16919
DateWed Jan 25 15:20:40 GMT 2012
Unique Job IDf54722af1d87bd4f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2oy7A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
Confidence and coverage
Confidence: 96.5% Coverage: 19%
269 residues ( 19% of your sequence) have been modelled with 96.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPG
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Disorder  ??????????????????

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   .........70.........80.........90.........100.........110.........120
Sequence  ETDLALPGPLPFILSRTYSSYRTKTPAPVGVFGPGWKAPSDIRLQLRDDGLILNDNGGRS
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   .........130.........140.........150.........160.........170.........180
Sequence  IHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQ
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   .........190.........200.........210.........220.........230.........240
Sequence  GPWWILGWSERVPGAEDVLPAPLPPYRVLTGMADRFGRTLTYRREAAGDLAGEITGVTDG
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   .........250.........260.........270.........280.........290.........300
Sequence  AGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSASAFPDTLPGTEYGPDRGIRLSAVWL
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   .........310.........320.........330.........340.........350.........360
Sequence  MHDPAYPESLPAAPLVRYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPE
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   .........370.........380.........390.........400.........410.........420
Sequence  MRYRYDDTGRVVEQLNPAGLSYRYLYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELA
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   .........430.........440.........450.........460.........470.........480
Sequence  DGSVTRSGYDAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTA
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   .........490.........500.........510.........520.........530.........540
Sequence  VVSPDGLESRREYDEPGRLVSETSRSGETVRYRYDDAHSELPATTTDATGSTRQMTWSRY
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   .........550.........560.........570.........580.........590.........600
Sequence  GQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRRYDNRGRLTSVKDAQGRETRYEY
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   .........610.........620.........630.........640.........650.........660
Sequence  NAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSVF
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   .........670.........680.........690.........700.........710.........720
Sequence  SYDALDRLVQQGGFDGRTQRYHYDLTGKLTQSEDEGLVILWYYDESDRITHRTVNGEPAE
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   .........730.........740.........750.........760.........770.........780
Sequence  QWQYDGHGWLTDISHLSEGHRVAVHYGYDDKGRLTGECQTVENPETGELLWQHETKHAYN
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   .........790.........800.........810.........820.........830.........840
Sequence  EQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETVRSFGSMAGSNA
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   .........850.........860.........870.........880.........890.........900
Sequence  AYELTSTYTPAGQLQSQHLNSLVYDRDYGWSDNGDLVRISGPRQTREYGYSATGRLESVR
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   .........910.........920.........930.........940.........950.........960
Sequence  TLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKT
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  DRIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRE
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  RDLTGWMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKA
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  QRRSLAETLQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQL
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  ARQVEPEYTPARKAHLYHCDHRGLPLALISEDGNTAWSAEYDEWGNQLNEENPHHVYQPY
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  RLPGQQHDEESGLYYNRHRYYDPLQGRYITQDPMGLKGGWNLYQYPLNPLQQIDPMGLLQ
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  TWDDARSGACTGGVCGVLSRIIGPSKFDSTADAALDALKETQNRSLCNDMEYSGIVCKDT
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  NGKYFASKAETDNLRKESYPLKRKCPTGTDRVAAYHTHGADSHGDYVDEFFSSSDKNLVR
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   .........1390.........1400.........1410.........1420......
Sequence  SKDNNLEAFYLATPDGRFEALNNKGEYIFIRNSVPGLSSVCIPYHD
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2oy7 chain A

3D model

Region: 389 - 666
Aligned: 269
Modelled: 278
Confidence: 96.5%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant

Phyre2

PDB 1ryp chain I

3D model

Region: 1250 - 1352
Aligned: 102
Modelled: 103
Confidence: 46.2%
Identity: 20%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Proteasome subunits

Phyre2

PDB 1x3z chain A domain 1

3D model

Region: 1220 - 1253
Aligned: 33
Modelled: 34
Confidence: 46.0%
Identity: 18%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 1iru chain A

3D model

Region: 1250 - 1330
Aligned: 81
Modelled: 81
Confidence: 43.0%
Identity: 16%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Proteasome subunits

Phyre2

PDB 3nqh chain A

3D model

Region: 1118 - 1350
Aligned: 213
Modelled: 233
Confidence: 42.9%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution

Phyre2

PDB 1j5q chain B

3D model

Region: 1200 - 1297
Aligned: 73
Modelled: 81
Confidence: 37.5%
Identity: 25%
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.

Phyre2

PDB 1n7d chain A

3D model

Region: 474 - 680
Aligned: 207
Modelled: 207
Confidence: 36.6%
Identity: 10%
PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor

Phyre2

PDB 1j2p chain A

3D model

Region: 1250 - 1330
Aligned: 81
Modelled: 81
Confidence: 33.2%
Identity: 19%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Proteasome subunits

Phyre2

PDB 1m4x chain C

3D model

Region: 1239 - 1297
Aligned: 41
Modelled: 42
Confidence: 30.7%
Identity: 29%
PDB header:virus
Chain: C: PDB Molecule:pbcv-1 virus capsid;
PDBTitle: pbcv-1 virus capsid, quasi-atomic model

Phyre2

PDB 3esw chain A

3D model

Region: 1220 - 1253
Aligned: 33
Modelled: 34
Confidence: 30.5%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.

Phyre2

PDB 2ivz chain D

3D model

Region: 390 - 630
Aligned: 237
Modelled: 241
Confidence: 30.3%
Identity: 11%
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain

Phyre2

PDB 2f4m chain A domain 1

3D model

Region: 1220 - 1253
Aligned: 34
Modelled: 34
Confidence: 28.5%
Identity: 26%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 1wc9 chain A

3D model

Region: 1230 - 1299
Aligned: 65
Modelled: 70
Confidence: 27.0%
Identity: 22%
Fold: Ligand-binding domain in the NO signalling and Golgi transport
Superfamily: Ligand-binding domain in the NO signalling and Golgi transport
Family: TRAPP components

Phyre2

PDB 3e5z chain A

3D model

Region: 430 - 707
Aligned: 256
Modelled: 262
Confidence: 26.8%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.

Phyre2

PDB 1m3y chain A domain 2

3D model

Region: 1239 - 1297
Aligned: 41
Modelled: 42
Confidence: 26.1%
Identity: 29%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Group II dsDNA viruses VP
Family: Major capsid protein vp54

Phyre2

PDB 3msw chain A

3D model

Region: 936 - 986
Aligned: 35
Modelled: 35
Confidence: 24.3%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution

Phyre2

PDB 2cfh chain A

3D model

Region: 1243 - 1299
Aligned: 52
Modelled: 57
Confidence: 23.9%
Identity: 25%
PDB header:transport
Chain: A: PDB Molecule:trafficking protein particle complex subunit 3;
PDBTitle: structure of the bet3-tpc6b core of trapp

Phyre2

PDB 1rz2 chain A

3D model

Region: 1315 - 1399
Aligned: 79
Modelled: 79
Confidence: 22.9%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein ba4783;
PDBTitle: 1.6a crystal structure of the protein ba4783/q81l49 (similar to2 sortase b) from bacillus anthracis.

Phyre2

PDB 3ifz chain A

3D model

Region: 1352 - 1398
Aligned: 36
Modelled: 47
Confidence: 22.7%
Identity: 25%
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution

Phyre2

PDB 2x12 chain A

3D model

Region: 1158 - 1183
Aligned: 26
Modelled: 26
Confidence: 22.4%
Identity: 27%
PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae

Phyre2
1

c2oy7A_
2

d1rypi_
3

d1x3za1
4

d1irua_
5

c3nqhA_
6

c1j5qB_
7

c1n7dA_
8

d1j2pa_
9

c1m4xC_
10

c3eswA_
11

c2ivzD_
12

d2f4ma1
13

d1wc9a_
14

c3e5zA_
15

d1m3ya2
16

c3mswA_
17

c2cfhA_
18

c1rz2A_
19

c3ifzA_
20

c2x12A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2oy7A_



96.5 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
2d1rypi_



46.2 20 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
3d1x3za1



46.0 18 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
4d1irua_



43.0 16 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
5c3nqhA_



42.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution
6c1j5qB_



37.5 25 PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.
7c1n7dA_



36.6 10 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
8d1j2pa_



33.2 19 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
9c1m4xC_



30.7 29 PDB header:virus
Chain: C: PDB Molecule:pbcv-1 virus capsid;
PDBTitle: pbcv-1 virus capsid, quasi-atomic model
10c3eswA_



30.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
11c2ivzD_



30.3 11 PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
12d2f4ma1



28.5 26 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
13d1wc9a_



27.0 22 Fold:Ligand-binding domain in the NO signalling and Golgi transport
Superfamily:Ligand-binding domain in the NO signalling and Golgi transport
Family:TRAPP components
14c3e5zA_



26.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
15d1m3ya2



26.1 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Major capsid protein vp54
16c3mswA_



24.3 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution
17c2cfhA_



23.9 25 PDB header:transport
Chain: A: PDB Molecule:trafficking protein particle complex subunit 3;
PDBTitle: structure of the bet3-tpc6b core of trapp
18c1rz2A_



22.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein ba4783;
PDBTitle: 1.6a crystal structure of the protein ba4783/q81l49 (similar to2 sortase b) from bacillus anthracis.
19c3ifzA_



22.7 25 PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution
20c2x12A_



22.4 27 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae
21c3rwxA_



not modelled 22.2 18 PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution
22c2zcyM_



not modelled 20.2 16 PDB header:hydrolase
Chain: M: PDB Molecule:proteasome component pre4;
PDBTitle: yeast 20s proteasome:syringolin a-complex
23d1ryp2_



not modelled 20.2 16 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
24c1bqfA_



not modelled 20.1 70 PDB header:hormone/growth factor
Chain: A: PDB Molecule:protein (growth-blocking peptide);
PDBTitle: growth-blocking peptide (gbp) from pseudaletia separata
25d1rype_



not modelled 19.9 17 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
26c2kijA_



not modelled 19.1 23 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a
27c2oryA_



not modelled 18.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of m37 lipase
28c3bmxB_



not modelled 17.8 38 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis
29d1ri9a_



not modelled 17.3 24 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
30c1ri9A_



not modelled 17.3 24 PDB header:signaling protein
Chain: A: PDB Molecule:fyn-binding protein;
PDBTitle: structure of a helically extended sh3 domain of the t cell2 adapter protein adap
31d1pk6c_



not modelled 17.0 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
32d1qwza_



not modelled 16.4 18 Fold:Sortase
Superfamily:Sortase
Family:Sortase
33c2ka3C_



not modelled 15.7 36 PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
34d1rh1a1



not modelled 15.4 20 Fold:Cloacin translocation domain
Superfamily:Cloacin translocation domain
Family:Cloacin translocation domain
35c3nzwH_



not modelled 15.3 20 PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:proteasome component pup1;
PDBTitle: crystal structure of the yeast 20s proteasome in complex with 2b
36d2oqza1



not modelled 15.1 15 Fold:Sortase
Superfamily:Sortase
Family:Sortase
37d1bcga_



not modelled 15.1 35 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
38c2gacA_



not modelled 15.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
39c3h4pB_



not modelled 15.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:proteasome subunit alpha;
PDBTitle: proteasome 20s core particle from methanocaldococcus2 jannaschii
40d1bcoa1



not modelled 14.8 17 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
41c3lk6A_



not modelled 14.7 38 PDB header:hydrolase
Chain: A: PDB Molecule:lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis
42d1pk6b_



not modelled 14.7 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
43d1iruc_



not modelled 14.6 21 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
44c3ilwA_



not modelled 14.4 45 PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: structure of dna gyrase subunit a n-terminal domain
45d1xata_



not modelled 14.2 23 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
46c2kkyA_



not modelled 14.1 53 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ecs2156;
PDBTitle: solution structure of c-terminal domain of oxidized nleg2-3 (residue2 90-191) from pathogenic e. coli o157:h7. northeast structural3 genomics consortium and midwest center for structural genomics target4 et109a
47d1rypc_



not modelled 13.8 22 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
48c3ghpA_



not modelled 13.7 36 PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: structure of the second type ii cohesin module from the2 adaptor scaa scaffoldin of acetivibrio cellulolyticus3 (including long c-terminal linker)
49c1t3dB_



not modelled 13.7 32 PDB header:transferase
Chain: B: PDB Molecule:serine acetyltransferase;
PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a
50d1c3ha_



not modelled 13.5 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
51c2novD_



not modelled 13.4 19 PDB header:isomerase
Chain: D: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target
52c2b59A_



not modelled 13.2 24 PDB header:hydrolase/structural protein
Chain: A: PDB Molecule:cog1196: chromosome segregation atpases;
PDBTitle: the type ii cohesin dockerin complex
53d1rypj_



not modelled 13.0 15 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
54c3vh0C_



not modelled 12.9 9 PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna
55c1zvuA_



not modelled 12.9 24 PDB header:isomerase
Chain: A: PDB Molecule:topoisomerase iv subunit a;
PDBTitle: structure of the full-length e. coli parc subunit
56c2gtjA_



not modelled 12.7 18 PDB header:signaling protein
Chain: A: PDB Molecule:fyn-binding protein;
PDBTitle: reduced form of adap hsh3-n-domain
57d1tyja1



not modelled 12.6 27 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
58d1zv9a1



not modelled 12.6 36 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family III
59d1irug_



not modelled 12.5 12 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
60c2xetB_



not modelled 12.4 5 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
61d1xaka_



not modelled 12.4 44 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Accessory protein X4 (ORF8, ORF7a)
Family:Accessory protein X4 (ORF8, ORF7a)
62c2w8bB_



not modelled 12.4 11 PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal
63c2e5pA_



not modelled 12.3 23 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
64c3qx3B_



not modelled 12.2 50 PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
65d1ng5a_



not modelled 12.1 18 Fold:Sortase
Superfamily:Sortase
Family:Sortase
66d1m7xa2



not modelled 12.0 13 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
67c2wl2B_



not modelled 11.8 22 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
68c2iu9C_



not modelled 11.7 23 PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine
PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
69d1ab4a_



not modelled 11.5 22 Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
70c1p4vA_



not modelled 11.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase
PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine
71c2wlgA_



not modelled 11.4 24 PDB header:transferase
Chain: A: PDB Molecule:polysialic acid o-acetyltransferase;
PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy
72d2jdqd1



not modelled 11.4 15 Fold:PB2 C-terminal domain-like
Superfamily:PB2 C-terminal domain-like
Family:PB2 C-terminal domain-like
73c2hc8A_



not modelled 11.4 29 PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
74c2xkjE_



not modelled 11.3 36 PDB header:isomerase
Chain: E: PDB Molecule:topoisomerase iv;
PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate)
75c3fnkA_



not modelled 11.3 25 PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus
76d1bjta_



not modelled 11.2 60 Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
77c1bjtA_



not modelled 11.2 60 PDB header:topoisomerase
Chain: A: PDB Molecule:topoisomerase ii;
PDBTitle: topoisomerase ii residues 409-1201
78d1t3da_



not modelled 11.2 32 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Serine acetyltransferase
79c2vtwF_



not modelled 11.2 27 PDB header:viral protein
Chain: F: PDB Molecule:fiber protein 2;
PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre
80c1yo4A_



not modelled 11.1 47 PDB header:viral protein
Chain: A: PDB Molecule:hypothetical protein x4;
PDBTitle: solution structure of the sars coronavirus orf 7a coded x42 protein
81c1hrlA_



not modelled 11.0 60 PDB header:toxin
Chain: A: PDB Molecule:paralytic peptide i;
PDBTitle: structure of a paralytic peptide from an insect, manduca2 sexta
82d1iruh_



not modelled 10.9 12 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
83d1j2qh_



not modelled 10.8 25 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
84d1iruk_



not modelled 10.8 22 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
85d1pk6a_



not modelled 10.7 22 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
86d1w7pd2



not modelled 10.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
87c3dr2A_



not modelled 10.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:exported gluconolactonase;
PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways
88d1x38a2



not modelled 10.5 25 Fold:Flavodoxin-like
Superfamily:Beta-D-glucan exohydrolase, C-terminal domain
Family:Beta-D-glucan exohydrolase, C-terminal domain
89c2wh7A_



not modelled 10.4 30 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-phage associated;
PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2
90d1rypd_



not modelled 10.0 13 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
91d1eaic_



not modelled 9.9 25 Fold:Serine protease inhibitors
Superfamily:Serine protease inhibitors
Family:ATI-like
92c2xk0A_



not modelled 9.9 27 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
93c2hh9A_



not modelled 9.9 28 PDB header:transferase
Chain: A: PDB Molecule:thiamin pyrophosphokinase;
PDBTitle: thiamin pyrophosphokinase from candida albicans
94d1krra_



not modelled 9.8 21 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
95d1o5ua_



not modelled 9.8 11 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
96d1o91a_



not modelled 9.7 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
97c1o91B_



not modelled 9.7 31 PDB header:collagen
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
98d1jnpa_



not modelled 9.7 26 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
99c7apiB_



not modelled 9.6 6 PDB header:proteinase inhibitor
Chain: B: PDB Molecule:alpha 1-antitrypsin;
PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0