Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15070
DateThu Jan 5 11:34:34 GMT 2012
Unique Job IDf48f842527985c7d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1o6aa_
Top template information
Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
Confidence and coverage
Confidence: 99.9% Coverage: 63%
86 residues ( 63% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI
Secondary structure 
SS confidence 
Disorder  ???????????????????????????????????????????????????????
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........130.......
Sequence  RITDIITPSERMRRLSR
Secondary structure 
SS confidence 
Disorder 
?
?
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1o6a chain A

3D model

Region: 52 - 137
Aligned: 86
Modelled: 86
Confidence: 99.9%
Identity: 55%
Fold: Surface presentation of antigens (SPOA)
Superfamily: Surface presentation of antigens (SPOA)
Family: Surface presentation of antigens (SPOA)

Phyre2

PDB 1o9y chain A

3D model

Region: 57 - 126
Aligned: 70
Modelled: 70
Confidence: 99.8%
Identity: 27%
Fold: Surface presentation of antigens (SPOA)
Superfamily: Surface presentation of antigens (SPOA)
Family: Surface presentation of antigens (SPOA)

Phyre2

PDB 2k5f chain A

3D model

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 58.6%
Identity: 29%
PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron transport protein a;
PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121

Phyre2

PDB 2gcx chain A domain 1

3D model

Region: 79 - 109
Aligned: 31
Modelled: 31
Confidence: 56.8%
Identity: 23%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2

PDB 2k5l chain A

3D model

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 46.5%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:feoa;
PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17

Phyre2

PDB 2k4y chain A

3D model

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 46.1%
Identity: 23%
PDB header:metal transport
Chain: A: PDB Molecule:feoa-like protein;
PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178

Phyre2

PDB 3mhx chain B

3D model

Region: 79 - 109
Aligned: 30
Modelled: 31
Confidence: 32.6%
Identity: 27%
PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor

Phyre2

PDB 2k5i chain A

3D model

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 32.1%
Identity: 19%
PDB header:metal transport
Chain: A: PDB Molecule:iron transport protein;
PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131

Phyre2

PDB 3gt2 chain A

3D model

Region: 80 - 114
Aligned: 35
Modelled: 35
Confidence: 29.5%
Identity: 17%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 96 - 129
Aligned: 34
Modelled: 34
Confidence: 26.5%
Identity: 21%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1m5q chain 1

3D model

Region: 88 - 125
Aligned: 38
Modelled: 38
Confidence: 26.3%
Identity: 13%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

Phyre2

PDB 1wmx chain B

3D model

Region: 70 - 106
Aligned: 37
Modelled: 37
Confidence: 24.4%
Identity: 11%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 96 - 111
Aligned: 16
Modelled: 16
Confidence: 24.0%
Identity: 31%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3ddy chain A

3D model

Region: 78 - 137
Aligned: 54
Modelled: 60
Confidence: 23.5%
Identity: 19%
PDB header:luminescent protein
Chain: A: PDB Molecule:lumazine protein;
PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria

Phyre2

PDB 2h3j chain A domain 1

3D model

Region: 79 - 107
Aligned: 29
Modelled: 29
Confidence: 23.3%
Identity: 17%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2

PDB 2glv chain A

3D model

Region: 82 - 114
Aligned: 33
Modelled: 33
Confidence: 22.0%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-acyl carrier protein
PDBTitle: crystal structure of (3r)-hydroxyacyl-acyl carrier protein2 dehydratase(fabz) mutant(y100a) from helicobacter pylori

Phyre2

PDB 2e63 chain A

3D model

Region: 78 - 107
Aligned: 30
Modelled: 30
Confidence: 20.8%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1787 protein;
PDBTitle: solution structure of the neuz domain in kiaa1787 protein

Phyre2

PDB 2fg0 chain B

3D model

Region: 80 - 125
Aligned: 45
Modelled: 46
Confidence: 20.3%
Identity: 11%
PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution

Phyre2

PDB 2evr chain A domain 2

3D model

Region: 80 - 125
Aligned: 45
Modelled: 46
Confidence: 20.1%
Identity: 11%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: NlpC/P60

Phyre2

PDB 3e19 chain D

3D model

Region: 79 - 109
Aligned: 31
Modelled: 31
Confidence: 19.2%
Identity: 26%
PDB header:transcription regulator, metal binding p
Chain: D: PDB Molecule:feoa;
PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group

Phyre2
1
d1o6aa_
2
d1o9ya_
3
c2k5fA_
4
d2gcxa1
5
c2k5lA_
6
c2k4yA_
7
c3mhxB_
8
c2k5iA_
9
c3gt2A_
10
d3bwud1
11
d1m5q1_
12
d1wmxb_
13
d1zdva1
14
c3ddyA_
15
d2h3ja1
16
c2glvA_
17
c2e63A_
18
c2fg0B_
19
d2evra2
20
c3e19D_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1o6aa_
99.9 55 Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
2d1o9ya_
99.8 27 Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
3c2k5fA_
58.6 29 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron transport protein a;
PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121
4d2gcxa1
56.8 23 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
5c2k5lA_
46.5 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:feoa;
PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17
6c2k4yA_
46.1 23 PDB header:metal transport
Chain: A: PDB Molecule:feoa-like protein;
PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178
7c3mhxB_
32.6 27 PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
8c2k5iA_
32.1 19 PDB header:metal transport
Chain: A: PDB Molecule:iron transport protein;
PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131
9c3gt2A_
29.5 17 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c
10d3bwud1
26.5 21 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
11d1m5q1_
26.3 13 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
12d1wmxb_
24.4 11 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
13d1zdva1
24.0 31 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
14c3ddyA_
23.5 19 PDB header:luminescent protein
Chain: A: PDB Molecule:lumazine protein;
PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria
15d2h3ja1
23.3 17 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
16c2glvA_
22.0 21 PDB header:lyase
Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-acyl carrier protein
PDBTitle: crystal structure of (3r)-hydroxyacyl-acyl carrier protein2 dehydratase(fabz) mutant(y100a) from helicobacter pylori
17c2e63A_
20.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1787 protein;
PDBTitle: solution structure of the neuz domain in kiaa1787 protein
18c2fg0B_
20.3 11 PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
19d2evra2
20.1 11 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
20c3e19D_
19.2 26 PDB header:transcription regulator, metal binding p
Chain: D: PDB Molecule:feoa;
PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group
21d2isba1
not modelled 19.0 33 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:FumA C-terminal domain-like
Family:FumA C-terminal domain-like
22c2kytA_
not modelled 17.9 7 PDB header:hydrolase
Chain: A: PDB Molecule:group xvi phospholipase a2;
PDBTitle: solution struture of the h-rev107 n-terminal domain
23d1zdxa1
not modelled 17.8 26 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
24c3pbiA_
not modelled 17.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:invasion protein;
PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
25c2xivA_
not modelled 15.9 19 PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis
26c1i8dB_
not modelled 15.3 18 PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase;
PDBTitle: crystal structure of riboflavin synthase
27c3hruA_
not modelled 15.2 16 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
28c3cw1D_
not modelled 14.9 16 PDB header:splicing
Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3;
PDBTitle: crystal structure of human spliceosomal u1 snrnp
29c2gl0A_
not modelled 14.9 22 PDB header:transferase
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of pae2307 in complex with adenosine
30d1u1za_
not modelled 14.7 6 Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:FabZ-like
31d1vgga_
not modelled 14.6 16 Fold:Ta1353-like
Superfamily:Ta1353-like
Family:Ta1353-like
32c2d16B_
not modelled 14.3 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph1918;
PDBTitle: crystal structure of ph1918 protein from pyrococcus horikoshii ot3
33c2ekmC_
not modelled 14.2 23 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein st1511;
PDBTitle: structure of st1219 protein from sulfolobus tokodaii
34c3swnC_
not modelled 13.6 10 PDB header:rna binding protein
Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
35d1i4k1_
not modelled 13.2 14 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
36d1vyua1
not modelled 12.6 6 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
37c3cw15_
not modelled 12.0 19 PDB header:splicing
Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g;
PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp
38d2je8a4
not modelled 11.8 15 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
39d1t0ha_
not modelled 11.7 12 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
40c2glwA_
not modelled 11.5 14 PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
41d4fiva_
not modelled 10.9 27 Fold:Acid proteases
Superfamily:Acid proteases
Family:Retroviral protease (retropepsin)
42c2pn0D_
not modelled 10.6 31 PDB header:transcription
Chain: D: PDB Molecule:prokaryotic transcription elongation factor
PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea
43d2as0a1
not modelled 10.6 23 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical RNA methyltransferase domain (HRMD)
44d1n9ra_
not modelled 10.3 13 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
45c1b34A_
not modelled 10.2 16 PDB header:rna binding protein
Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1);
PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
46d1b34a_
not modelled 10.2 16 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
47c3a35B_
not modelled 9.9 17 PDB header:luminescent protein
Chain: B: PDB Molecule:lumazine protein;
PDBTitle: crystal structure of lump complexed with riboflavin
48d2axwa1
not modelled 9.7 19 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
49d1d3ba_
not modelled 9.6 16 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
50c3d37A_
not modelled 9.5 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tail protein, 43 kda;
PDBTitle: the crystal structure of the tail protein from neisseria meningitidis2 mc58
51d1t3la1
not modelled 9.2 12 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
52d2fwka1
not modelled 8.9 13 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
53d1eika_
not modelled 8.9 14 Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
54c3f3bA_
not modelled 8.9 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage-like element pbsx protein xkdh;
PDBTitle: structure of the phage-like element pbsx protein xkdh from2 bacillus subtilus. northeast structural genomics3 consortium target sr352.
55c1n9sH_
not modelled 8.6 13 PDB header:translation
Chain: H: PDB Molecule:small nuclear ribonucleoprotein f;
PDBTitle: crystal structure of yeast smf in spacegroup p43212
56c1t0jA_
not modelled 8.5 12 PDB header:signaling protein
Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a;
PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
57d1hmja_
not modelled 8.4 16 Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
58d1wmxa_
not modelled 8.1 8 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
59d1i8fa_
not modelled 8.1 11 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
60c3fcgB_
not modelled 8.1 27 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
61c3swnA_
not modelled 7.7 18 PDB header:rna binding protein
Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
62d1h641_
not modelled 7.6 8 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
63c1fx7C_
not modelled 7.5 6 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
64c1wruA_
not modelled 7.4 14 PDB header:structural protein
Chain: A: PDB Molecule:43 kda tail protein;
PDBTitle: structure of central hub elucidated by x-ray analysis of gene product2 44; baseplate component of bacteriophage mu
65c3butA_
not modelled 7.3 38 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein af_0446;
PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus
66d1dzfa2
not modelled 7.3 25 Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
67d1d1na_
not modelled 7.1 26 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
68d1jz8a3
not modelled 6.8 17 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
69c3h41A_
not modelled 6.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60 family protein;
PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution
70c3h0gE_
not modelled 6.6 25 PDB header:transcription
Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
71c2fwkB_
not modelled 6.4 14 PDB header:dna binding protein
Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5;
PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5
72d2pw9a1
not modelled 6.4 25 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:FdhD/NarQ
73c2fvnA_
not modelled 6.3 19 PDB header:cell adhesion
Chain: A: PDB Molecule:protein afad;
PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins
74d1n9sc_
not modelled 6.3 13 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
75c2dlpA_
not modelled 6.2 27 PDB header:structural protein
Chain: A: PDB Molecule:kiaa1783 protein;
PDBTitle: solution structure of the sh3 domain of human kiaa17832 protein
76c3cw1Z_
not modelled 6.2 22 PDB header:splicing
Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f;
PDBTitle: crystal structure of human spliceosomal u1 snrnp
77d1mgqa_
not modelled 6.2 16 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
78c2yueA_
not modelled 6.0 7 PDB header:rna binding protein
Chain: A: PDB Molecule:protein neuralized;
PDBTitle: solution structure of the neuz (nhr) domain in neuralized2 from drosophila melanogaster
79c3swnT_
not modelled 6.0 11 PDB header:rna binding protein
Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6;
PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
80d1jbma_
not modelled 5.9 16 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
81d1o91a_
not modelled 5.7 17 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
82c1o91B_
not modelled 5.7 17 PDB header:collagen
Chain: B: PDB Molecule:collagen alpha 1(viii) chain;
PDBTitle: crystal structure of a collagen viii nc1 domain trimer
83d1ljoa_
not modelled 5.6 13 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
84d1d3bb_
not modelled 5.6 8 Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
85c3d6xA_
not modelled 5.5 27 PDB header:lyase
Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase;
PDBTitle: crystal structure of campylobacter jejuni fabz
86d1p9ka_
not modelled 5.5 24 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
87c3dzoA_
not modelled 5.3 16 PDB header:transferase
Chain: A: PDB Molecule:rhoptry kinase domain;
PDBTitle: crystal structure of a rhoptry kinase from toxoplasma gondii
88d1yq2a3
not modelled 5.3 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
89c3cnrA_
not modelled 5.2 23 PDB header:unknown function
Chain: A: PDB Molecule:type iv fimbriae assembly protein;
PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri
90c1zyiA_
not modelled 5.2 11 PDB header:translation
Chain: A: PDB Molecule:methylosome subunit picln;
PDBTitle: solution structure of icln, a multifunctional protein2 involved in regulatory mechanisms as different as cell3 volume regulation and rna splicing
91d2cnda1
not modelled 5.2 33 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
92d2bmwa1
not modelled 5.0 33 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0