BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (137 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Pro...   275   4e-73
UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=En...   253   1e-66
UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n...   177   1e-43
UniRef50_Q47I10 Type III secretion system outer membrane O prote...   150   2e-35
UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Pro...   144   1e-33
UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathwa...   140   1e-32
UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Pro...   140   1e-32
UniRef50_Q2NX05 Flagellar motor switch protein FliN n=5 Tax=Ente...   138   4e-32
UniRef50_Q31FQ0 Flagellar motor switch protein FliN n=5 Tax=Gamm...   129   4e-29
UniRef50_Q8D3E9 FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8...   127   1e-28
UniRef50_B5YIZ3 Flagellar motor switch protein FliN n=1 Tax=Ther...   120   2e-26
UniRef50_Q2LT02 Flagellar motor switch protein n=2 Tax=Deltaprot...   118   5e-26
UniRef50_Q0AA08 Flagellar motor switch protein FliN n=49 Tax=cel...   114   7e-25
UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Pro...   114   7e-25
UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Ther...   113   2e-24
UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Delt...   112   4e-24
UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion...   111   6e-24
UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmi...   111   7e-24
UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halot...   110   9e-24
UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion...   110   1e-23
UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathwa...   110   1e-23
UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desul...   110   1e-23
UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein ...   108   4e-23
UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicute...   108   5e-23
UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Pro...   108   6e-23
UniRef50_B8FK37 Flagellar motor switch protein FliN n=3 Tax=Bact...   107   8e-23
UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Therm...   107   9e-23
UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion...   107   1e-22
UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=...   106   2e-22
UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion...   106   2e-22
UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion...   105   4e-22
UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion...   105   4e-22
UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms Rep...   105   5e-22
UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=...   105   5e-22
UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clost...   104   7e-22
UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pp...   103   1e-21
UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Therm...   103   2e-21
UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Ther...   103   2e-21
UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion...   103   2e-21
UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brev...   103   2e-21
UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion...   102   3e-21
UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspi...   102   3e-21
UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema...   101   7e-21
UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria ...   101   7e-21
UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clos...   101   7e-21
UniRef50_A4A5Y8 Flagellar motor switch protein fliN n=3 Tax=uncl...   100   2e-20
UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Deth...    99   3e-20
UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridiu...    98   8e-20
UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion...    98   9e-20
UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion...    97   1e-19
UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lact...    97   2e-19
UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridi...    97   2e-19
UniRef50_B2V6S4 Flagellar motor switch protein FliN n=3 Tax=Sulf...    96   3e-19
UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=...    96   3e-19
UniRef50_Q89AZ3 Flagellar motor switch protein fliN n=1 Tax=Buch...    96   3e-19
UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kine...    96   4e-19
UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobaci...    96   4e-19
UniRef50_B9KJD9 Flagellar switch protein n=5 Tax=Rhodobacter sph...    96   4e-19
UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Spha...    95   6e-19
UniRef50_Q4JMS2 Predicted flagellar motor switch protein n=3 Tax...    95   7e-19
UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clos...    94   1e-18
UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion...    94   1e-18
UniRef50_Q1NP93 Surface presentation of antigens (SPOA) protein ...    94   1e-18
UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotro...    93   2e-18
UniRef50_Q6AJS8 Probable flagellar motor switch protein (FliN) n...    92   4e-18
UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pp...    92   4e-18
UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydo...    92   5e-18
UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax...    91   8e-18
UniRef50_Q7ULU7 Flagellar motor switch protein fliN n=1 Tax=Rhod...    91   1e-17
UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 T...    91   1e-17
UniRef50_Q1Q6T3 Strong similar to flagellar motor switch protein...    91   1e-17
UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella the...    91   2e-17
UniRef50_B4U6V5 Flagellar motor switch protein FliN n=1 Tax=Hydr...    90   2e-17
UniRef50_Q44903 Flagellar motor switch protein fliN n=21 Tax=Spi...    90   3e-17
UniRef50_C0QPC5 Flagellar motor switch protein FliN n=2 Tax=Aqui...    89   5e-17
UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jone...    89   6e-17
UniRef50_A1QZ73 Flagellar motor switch protein FliN n=7 Tax=Spir...    88   7e-17
UniRef50_C0C1N9 Putative uncharacterized protein n=1 Tax=Clostri...    88   7e-17
UniRef50_A0LDK9 Flagellar motor switch protein FliN n=1 Tax=Magn...    87   1e-16
UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacte...    87   1e-16
UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobac...    87   2e-16
UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acid...    86   3e-16
UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Acti...    86   4e-16
UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion...    86   5e-16
UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Plan...    85   6e-16
UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhod...    85   7e-16
UniRef50_P57183 Flagellar motor switch protein fliN n=3 Tax=Buch...    84   1e-15
UniRef50_A8RWD0 Putative uncharacterized protein n=3 Tax=Clostri...    84   1e-15
UniRef50_C2KZ02 Possible flagellar motor switch protein FliY n=1...    84   1e-15
UniRef50_C0GJF1 Flagellar motor switch protein FliN n=1 Tax=Deth...    84   1e-15
UniRef50_D2S982 Flagellar motor switch protein FliN n=1 Tax=Geod...    84   2e-15
UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moore...    83   3e-15
UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Plan...    83   3e-15
UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Noca...    83   3e-15
UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobi...    83   3e-15
UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitr...    82   4e-15
UniRef50_C7M222 Flagellar motor switch protein FliN n=1 Tax=Acid...    82   5e-15
UniRef50_D2R538 Flagellar motor switch protein FliN n=2 Tax=Plan...    82   5e-15
UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arth...    81   8e-15
UniRef50_A4SI07 Lateral flagellar motor switch protein, lfiN n=2...    81   8e-15
UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerot...    81   1e-14
UniRef50_C6NYG7 Flagellar motor switch protein FliN n=1 Tax=Acid...    81   1e-14
UniRef50_Q04RL4 Endoflagellar motor switch protein n=6 Tax=Lepto...    80   2e-14
UniRef50_A5V6A7 Flagellar motor switch protein FliN n=4 Tax=Sphi...    80   2e-14
UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacte...    80   3e-14
UniRef50_C1A552 Flagellar motor switch protein FliN n=1 Tax=Gemm...    79   3e-14
UniRef50_A4Y0Q2 Flagellar motor switch protein FliN n=1 Tax=Pseu...    79   4e-14
UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobi...    79   6e-14
UniRef50_Q2RZE3 Possible flagellar motor switch FliN n=1 Tax=Sal...    79   6e-14
UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas...    78   7e-14
UniRef50_Q058C3 Flagellar motor switch protein, C-ring protein n...    78   7e-14
UniRef50_D0I457 Flagellar motor switch protein FliN n=2 Tax=Vibr...    78   1e-13
UniRef50_Q0G104 Flagellar motor switch FliN protein:Surface pres...    78   1e-13
UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Deni...    77   2e-13
UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sang...    77   2e-13
UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivir...    77   2e-13
UniRef50_A1RF65 Flagellar motor switch protein FliN n=8 Tax=Shew...    76   3e-13
UniRef50_A6F9R7 Flagellar motor switch protein n=1 Tax=Moritella...    75   5e-13
UniRef50_B6QZA8 Flagellar motor switch protein n=1 Tax=Pseudovib...    75   6e-13
UniRef50_A5P6I8 Flagellar motor switch protein n=1 Tax=Erythroba...    74   1e-12
UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Cand...    74   1e-12
UniRef50_Q2WA21 Flagellar motor switch/type III secretory pathwa...    74   1e-12
UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Hel...    74   1e-12
UniRef50_B1I5E1 Surface presentation of antigens (SPOA) protein ...    74   2e-12
UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campyloba...    74   2e-12
UniRef50_A4THZ3 Flagellar switch protein n=26 Tax=Enterobacteria...    74   2e-12
UniRef50_A7K1M2 Flagellar motor switch protein FliN n=17 Tax=Vib...    73   2e-12
UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion...    73   3e-12
UniRef50_Q0EZ61 Flagellar protein n=1 Tax=Mariprofundus ferrooxy...    73   3e-12
UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding...    73   3e-12
UniRef50_Q1GNY9 Flagellar motor switch FliN n=2 Tax=Sphingomonad...    72   4e-12
UniRef50_B1ZL53 Flagellar motor switch protein FliN n=6 Tax=Rhiz...    72   5e-12
UniRef50_Q03593 Flagellar motor switch protein fliN n=21 Tax=Alp...    72   5e-12
UniRef50_Q11LL6 Flagellar motor switch protein FliN n=3 Tax=Phyl...    72   5e-12
UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibac...    72   7e-12
UniRef50_B9Z4S4 Flagellar motor switch protein FliN n=1 Tax=Luti...    72   7e-12
UniRef50_B1ZR34 Flagellar motor switch protein FliN n=3 Tax=Verr...    71   8e-12
UniRef50_B8EL08 Flagellar motor switch protein FliN n=2 Tax=Beij...    71   9e-12
UniRef50_B1LV08 Flagellar motor switch protein FliN n=1 Tax=Meth...    71   1e-11
UniRef50_A1UTV7 Flagellar motor switch protein fliY n=35 Tax=Rhi...    71   1e-11
UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Heli...    71   1e-11
UniRef50_A8AKJ4 Putative uncharacterized protein n=1 Tax=Citroba...    71   1e-11
UniRef50_A1T0L0 Surface presentation of antigens (SPOA) protein ...    71   1e-11
UniRef50_B6R821 Flagellar motor switch protein FliN n=2 Tax=Rhod...    70   2e-11
UniRef50_O54245 Flagellar motor switch protein fliN n=15 Tax=Rhi...    70   2e-11
UniRef50_B9JRN7 Flagellar motor switch protein FliN n=2 Tax=Rhiz...    70   2e-11
UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundi...    70   2e-11
UniRef50_Q18D12 Putative flagellar motor switch protein n=3 Tax=...    70   2e-11
UniRef50_Q57259 Flagellar motor switch protein fliN n=2 Tax=Rhiz...    70   2e-11
UniRef50_B6IW97 Flagellar motor switch protein FliN n=1 Tax=Rhod...    70   2e-11
UniRef50_C5JB71 Flagellar motor switch/type III secretory pathwa...    69   3e-11
UniRef50_C9PEF6 Flagellar motor switch protein FliN n=1 Tax=Vibr...    69   3e-11
UniRef50_A9HHD1 Flagellar motor switch protein FliN n=2 Tax=Rhod...    69   4e-11
UniRef50_A5FYJ9 Flagellar motor switch protein FliN n=17 Tax=Alp...    69   4e-11
UniRef50_A5D0I4 Flagellar motor switch/type III secretory pathwa...    69   5e-11
UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulf...    69   6e-11
UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiob...    68   7e-11
UniRef50_C8W1G7 Surface presentation of antigens (SPOA) protein ...    68   9e-11
UniRef50_A8RWA3 Putative uncharacterized protein n=3 Tax=Clostri...    68   1e-10
UniRef50_Q07SI0 Flagellar motor switch protein FliN n=7 Tax=Alph...    67   1e-10
UniRef50_C6XFK8 Putative flagellar motor switch protein n=1 Tax=...    66   4e-10
UniRef50_C0GJH0 Surface presentation of antigens (SPOA) protein ...    66   4e-10
UniRef50_A5KY22 Flagellar motor switch protein n=2 Tax=Vibrional...    66   4e-10
UniRef50_A3NFV2 Flagellar motor switch/type III secretory pathwa...    65   5e-10
UniRef50_Q5DY32 Lateral flagellar export/assembly protein (FliN-...    65   5e-10
UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arco...    65   6e-10
UniRef50_Q8KA38 Flagellar motor switch protein fliN n=1 Tax=Buch...    65   7e-10
UniRef50_A3SFT8 Surface presentation of antigens (SPOA) protein ...    64   1e-09
UniRef50_B6IQ95 Flagellar motor switch protein FliN n=1 Tax=Rhod...    64   2e-09
UniRef50_Q2CGH8 Flagellar motor switch protein FliN n=3 Tax=Rhod...    64   2e-09
UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyph...    63   3e-09
UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein ...    63   3e-09
UniRef50_A3WGR5 Flagellar motor switch protein n=1 Tax=Erythroba...    62   7e-09
UniRef50_A6Q2N5 Flagellar motor switch protein FliN/FliY n=1 Tax...    61   8e-09
UniRef50_B1K3A4 Flagellar motor switch protein FliN n=1 Tax=Burk...    61   9e-09
UniRef50_Q01PQ3 Surface presentation of antigens (SPOA) protein ...    61   1e-08
UniRef50_A7H064 Flagellar motor switch protein FliN n=8 Tax=Epsi...    61   1e-08
UniRef50_A4J755 Surface presentation of antigens (SPOA) protein ...    60   1e-08
UniRef50_A3ZT50 Probable flagellar motor switch protein fliN n=1...    60   2e-08
UniRef50_D1R7U0 Putative type III secretion system protein n=1 T...    60   2e-08
UniRef50_C7DF35 Flagellar motor switch protein FliN n=1 Tax=Thal...    59   3e-08
UniRef50_C1SLE0 Flagellar motor switch/type III secretory pathwa...    59   5e-08
UniRef50_C1F999 Putative flagellar motor switch protein FliN n=1...    59   5e-08
UniRef50_D1AZW0 Surface presentation of antigens (SPOA) protein ...    59   6e-08
UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein ...    58   1e-07
UniRef50_B1TBB1 Surface presentation of antigens (SPOA) protein ...    58   1e-07
UniRef50_D2LD12 Surface presentation of antigens (SPOA) protein ...    57   2e-07
UniRef50_O67495 Flagellar motor switch protein fliN n=1 Tax=Aqui...    57   3e-07
UniRef50_Q2SEZ2 Flagellar motor switch protein n=1 Tax=Hahella c...    56   3e-07
UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ...    56   3e-07
UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carb...    56   3e-07
UniRef50_Q6MBC5 Putative flagellar motor switch protein (= type ...    56   4e-07
UniRef50_C3KNB2 Type III secretion system translocation protein,...    55   5e-07
UniRef50_Q0C5L8 Putative flagellar motor switch protein FliN n=1...    55   8e-07
UniRef50_Q0ANV1 Surface presentation of antigens (SPOA) protein ...    55   9e-07
UniRef50_UPI0001AF390C type III secretion component, putative n=...    54   1e-06
UniRef50_Q2RPI0 Surface presentation of antigens (SPOA) protein ...    54   1e-06
UniRef50_Q1CTU2 Flagellar switch protein n=20 Tax=Helicobacterac...    54   1e-06
UniRef50_A9DR59 Flagellar motor switch protein n=1 Tax=Oceanibul...    54   1e-06
UniRef50_C0QPA3 Flagellar motor switch phosphatase FliY n=1 Tax=...    54   2e-06
UniRef50_B1LY10 Surface presentation of antigens (SPOA) protein ...    53   3e-06
UniRef50_Q1IR63 Flagellar motor switch FliN n=1 Tax=Candidatus K...    53   3e-06
UniRef50_C6N6Z9 Putative surface presentation of antigens (SPOA)...    52   4e-06
UniRef50_A8EW59 Flagellar motor switch protein FliN n=1 Tax=Arco...    51   9e-06
UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Ta...    51   1e-05
UniRef50_C1ZEH8 Flagellar motor switch/type III secretory pathwa...    50   2e-05
UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clo...    50   2e-05
UniRef50_A0NWB8 Putative uncharacterized protein n=3 Tax=Rhodoba...    49   5e-05
UniRef50_C5CYF0 Surface presentation of antigens (SPOA) protein ...    49   5e-05
UniRef50_D2R2R8 Surface presentation of antigens (SPOA) protein ...    49   5e-05
UniRef50_A4U4R5 Surface presentation of antigens (SPOA) protein ...    49   5e-05
UniRef50_Q7UIS4 Probable flagellar motor switch protein fliN [Fr...    49   5e-05
UniRef50_C3XFR2 Flagellar motor switch protein FliN n=1 Tax=Heli...    49   6e-05
UniRef50_B6IT07 Flagellar motor switch protein FliN n=2 Tax=Rhod...    49   6e-05
UniRef50_Q48IQ1 Type III secretion component, putative n=1 Tax=P...    49   7e-05
UniRef50_A6CBY5 Probable flagellar motor switch protein fliN n=1...    48   9e-05
UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria...    48   1e-04
UniRef50_D2TZ40 Type III secretion apparatus protein YscQ,HrcQ,S...    48   1e-04
UniRef50_B4R925 FliN family protein n=8 Tax=Alphaproteobacteria ...    47   1e-04
UniRef50_A8LMS4 Flagellar motor switch protein FliN n=5 Tax=Rhod...    47   1e-04
UniRef50_UPI00016C4201 hypothetical protein GobsU_09164 n=1 Tax=...    47   1e-04
UniRef50_Q1IR54 Surface presentation of antigens (SPOA) protein ...    47   2e-04
UniRef50_Q18CW8 Flagellar motor switch protein n=5 Tax=Clostridi...    47   2e-04
UniRef50_A0RC99 Flagellar motor switch protein N n=71 Tax=Bacill...    47   2e-04
UniRef50_A7K019 Type III secretion inner membrane protein YscQ n...    46   3e-04
UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halo...    46   3e-04
UniRef50_A7HWV0 Surface presentation of antigens (SPOA) protein ...    46   4e-04
UniRef50_Q2SH51 Flagellar motor switch/type III secretory pathwa...    45   5e-04
UniRef50_B1I5G4 CheC, inhibitor of MCP methylation n=1 Tax=Candi...    45   5e-04
UniRef50_B6WRL8 Putative uncharacterized protein n=1 Tax=Desulfo...    45   6e-04
UniRef50_A9APA9 Type III secretion system apparatus protein YscQ...    45   0.001
UniRef50_Q11M61 Surface presentation of antigens (SPOA) protein ...    44   0.001
UniRef50_Q2NR65 Type III secretion apparatus SpaO n=2 Tax=Sodali...    44   0.001
UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Baci...    44   0.001
UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desul...    44   0.001
UniRef50_C4PNI3 Type III secretion component, basal body n=13 Ta...    44   0.002
UniRef50_P74860 Secretion system apparatus protein ssaQ n=37 Tax...    43   0.003
UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natr...    43   0.003
UniRef50_A3VS57 Putative uncharacterized protein n=1 Tax=Parvula...    43   0.003
UniRef50_UPI0001744A0D type III secretion system protein n=1 Tax...    43   0.003
UniRef50_B1FB78 Type III secretion system apparatus protein YscQ...    43   0.003
UniRef50_B2V6Q2 Surface presentation of antigens (SPOA) protein ...    42   0.005
UniRef50_Q3SBB5 EpaO n=13 Tax=Escherichia RepID=Q3SBB5_ECOLX           42   0.006
UniRef50_A0AGF3 Complete genome n=15 Tax=Listeria RepID=A0AGF3_L...    42   0.007
UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobac...    42   0.008
UniRef50_D0FW27 Hrp/hrc Type III secretion system-Hrp/hrc secret...    42   0.008
UniRef50_C1DW32 Flagellar motor switch protein FliN/FliY n=1 Tax...    41   0.011
UniRef50_Q02KI5 Translocation protein in type III secretion n=5 ...    41   0.014
UniRef50_B3Q297 Type III secretion system translocation protein ...    41   0.014
UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhod...    41   0.015

>UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Proteobacteria
           RepID=FLIN_ECOLI
          Length = 137

 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI
Sbjct: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
           RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


>UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=Enterobacteriaceae
           RepID=FLIN_SALTY
          Length = 137

 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/137 (89%), Positives = 133/137 (97%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSDMNNP+D+N GA+DDLWA+AL+EQK+T++KSAA+ VFQQ GGGDVSG +QDIDLIMDI
Sbjct: 1   MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
           RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


>UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n=77
           Tax=Proteobacteria RepID=FLIN_PECCC
          Length = 106

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/106 (83%), Positives = 95/106 (89%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           +   E +F+   G D  G LQDIDLI+DIPVKLTVELGRT+MTIKELLRLTQGSVVALDG
Sbjct: 1   RPTTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDG 60

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           LAGEPLDILINGYLIAQGEVVVV+DKYGVRITDIITPSERMRRLSR
Sbjct: 61  LAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLSR 106


>UniRef50_Q47I10 Type III secretion system outer membrane O protein n=57
           Tax=Proteobacteria RepID=Q47I10_DECAR
          Length = 147

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 103/136 (75%), Gaps = 5/136 (3%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAET----VFQQFGG-GDVSGTLQDIDLIMDIP 61
           P +D+    +D WA A+SEQ  + + +A       +F  FGG    +G + ++D+I+DIP
Sbjct: 12  PVEDDGQISEDDWAAAMSEQAISDAPAAMAAQPADIFPSFGGNAGNAGMMNELDMILDIP 71

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V++TVELGRT++TIK LL+L  GSVV LD +AGEP+D+++NG LIAQGEVVVV DK+G+R
Sbjct: 72  VQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVNDKFGIR 131

Query: 122 ITDIITPSERMRRLSR 137
           +TDIITPSERMR+L+R
Sbjct: 132 LTDIITPSERMRKLNR 147


>UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Proteobacteria
           RepID=Q0AEF2_NITEC
          Length = 157

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 90/106 (84%), Gaps = 1/106 (0%)

Query: 33  SAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           +   +VF+QF   +V + T  DID+I+DIPV+LTVELGRTR+ IK LL+L QGSV+ LDG
Sbjct: 52  TKPSSVFEQFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDG 111

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +AGEP+D+L+NG LIAQGEVVVV +K+G+R+TDIITPSER+R+L+R
Sbjct: 112 MAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRKLNR 157


>UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathway protein FliN n=17
           Tax=Proteobacteria RepID=Q3SIG7_THIDA
          Length = 132

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 85/101 (84%), Gaps = 1/101 (0%)

Query: 38  VFQQFGGGDVS-GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           +F++F G   S G   DID I+DIPV LTVELGRT++ IK LL+L QGSVV LDGLAGEP
Sbjct: 32  IFKEFSGSASSTGLANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEP 91

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +D+L+NG LIAQGEVVVV DK+GVR+TDIITP+ER+R+L++
Sbjct: 92  MDVLVNGCLIAQGEVVVVNDKFGVRLTDIITPAERIRKLNK 132


>UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Proteobacteria
           RepID=A1WGY8_VEREI
          Length = 163

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 102/155 (65%), Gaps = 31/155 (20%)

Query: 7   PADDNNGAMDDL--WAEALSEQKSTSSKSAAETVFQQFGGGDVSG--------------- 49
           PAD  N A D    WAEAL EQK +    A     QQ  GG +SG               
Sbjct: 15  PAD--NAADDPFNGWAEALKEQKRSDEPPAE---GQQ--GGPLSGEPVRPPLAGAASGAS 67

Query: 50  -------TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                   + DI+ ++DIPV+L+VELGRT++ IK +L+L QGSVV LD LAGEP+D+L+N
Sbjct: 68  AVNGGEQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVN 127

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           GYLIAQGEVVVV DK+G+R+TD++TPSER+RR+SR
Sbjct: 128 GYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSR 162


>UniRef50_Q2NX05 Flagellar motor switch protein FliN n=5 Tax=Enterobacteriaceae
           RepID=Q2NX05_SODGM
          Length = 134

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 79/86 (91%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +D+ LI+DIPVK+TVELGRTRMTI+ELL L+Q +VV L+G AGEPLDILINGYLIA+GEV
Sbjct: 49  EDLSLILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEV 108

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
           VV+ ++YGVRI DI+TP+ERMRRLSR
Sbjct: 109 VVMGEQYGVRIADIVTPAERMRRLSR 134


>UniRef50_Q31FQ0 Flagellar motor switch protein FliN n=5 Tax=Gammaproteobacteria
           RepID=Q31FQ0_THICR
          Length = 153

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 98/139 (70%), Gaps = 7/139 (5%)

Query: 3   DMNNPADDNNGAMDDLWAEALSEQKS-TSSKSAAETVFQQF-----GGGDVSGTLQDIDL 56
           D    A+ ++ A DD W  ALSEQ + TSS ++ E     F     G GD S  + D+D+
Sbjct: 15  DEQAEAEGSDAAGDDPWGAALSEQAAETSSNNSDEIDAASFDALEKGRGDSSEKV-DLDV 73

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DIPV L +E+GR +++I+ LL  TQGSV+ +D LAGEPLD+L+NG LIA GEVVV+ D
Sbjct: 74  LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133

Query: 117 KYGVRITDIITPSERMRRL 135
           K+GVR+TD+++P ER+++L
Sbjct: 134 KFGVRLTDVVSPQERIKKL 152


>UniRef50_Q8D3E9 FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8D3E9_WIGBR
          Length = 135

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 97/138 (70%), Gaps = 4/138 (2%)

Query: 1   MSDMNN-PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           M+D+   P    N +++DL  +   ++   +S+   E    +     +S   +DI+LI+D
Sbjct: 1   MNDIKKEPEKIKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKNKKLS---EDINLILD 57

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IP+K+T+ELGRT+MTI++LL L + S+V LDG  GEPLDILIN YL+A+GEVVV+ ++YG
Sbjct: 58  IPIKMTIELGRTKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKERYG 117

Query: 120 VRITDIITPSERMRRLSR 137
           ++I DIITP ER+RRL+R
Sbjct: 118 IKILDIITPEERIRRLNR 135


>UniRef50_B5YIZ3 Flagellar motor switch protein FliN n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YIZ3_THEYD
          Length = 139

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 88/118 (74%), Gaps = 1/118 (0%)

Query: 19  WAEALSEQKSTSSKSAAETV-FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
            A+AL  +K+  +K   ++    +F   +     +DID I+DIP++L V +GRTR+ ++E
Sbjct: 21  MAKALEMEKAMKAKEEVQSPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRILVQE 80

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           LL+LTQGSVVALD LAGEP+++ +NG L+ +GEVVVV +K+G+RITDII+P ER+++L
Sbjct: 81  LLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNEKFGIRITDIISPQERVKQL 138


>UniRef50_Q2LT02 Flagellar motor switch protein n=2 Tax=Deltaproteobacteria
           RepID=Q2LT02_SYNAS
          Length = 163

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 85/128 (66%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
           +DD+N   +D+  E    Q  T     +   F++   G       D+D I+DIP+ L+VE
Sbjct: 35  SDDDNFGWEDVKEELAQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVE 94

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LGR RM I ELL+L QGS++ L  LAGEP+D+ +N  LIA+GEVVVV +K+G+R+TDI++
Sbjct: 95  LGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNEKFGIRLTDIVS 154

Query: 128 PSERMRRL 135
           P+ER+ +L
Sbjct: 155 PAERVNKL 162


>UniRef50_Q0AA08 Flagellar motor switch protein FliN n=49 Tax=cellular organisms
           RepID=Q0AA08_ALHEH
          Length = 226

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 74/83 (89%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++D+IMDIPV L++E+GRT+++I+ LL+L QGSVV LD LAGEPLD+++NG LIA GEVV
Sbjct: 143 NLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVV 202

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           VV +++G+R+TD+I+ +ER+++L
Sbjct: 203 VVNERFGIRLTDVISAAERVKKL 225


>UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Proteobacteria
           RepID=FLIN_PSEAE
          Length = 157

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 82/111 (73%), Gaps = 5/111 (4%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQ-----DIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
           +  S      ++FG    + T+      ++D+I+DIPV +++E+G T ++I+ LL+L QG
Sbjct: 46  AEPSTPRAPMEEFGASPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIRNLLQLNQG 105

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           SV+ LD LAGEPLD+L+NG LIA GEVVVV +K+G+R+TD+I+PSER+++L
Sbjct: 106 SVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 156


>UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6B2_THEAS
          Length = 375

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 77/97 (79%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F   GG +V+ +   IDLI DIPV++TVELGRTR TI E+L ++ GSVV L+ +AGEP+D
Sbjct: 277 FAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVD 336

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +L+NG LIA+GEVVV+ + +GVR+T+I++ +ER+R +
Sbjct: 337 VLVNGKLIARGEVVVIDENFGVRVTEIVSRAERIRSM 373


>UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria
           RepID=Q6MI47_BDEBA
          Length = 122

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 85/120 (70%), Gaps = 9/120 (7%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           D L AEA    +S+  K+++E    +          +++ LI+DIP+K++VELGRT+M +
Sbjct: 11  DQLVAEAAGMAESSGRKASSEMPTHKD---------RNLSLILDIPLKVSVELGRTKMPV 61

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
            ELL LTQGSV+ L  LAGEP+++ +N  LIA+GE VVV +K+GVR+TDII+P+ER+ +L
Sbjct: 62  SELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPAERVEQL 121


>UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion protein n=3
           Tax=Clostridiales RepID=C7ILI0_9CLOT
          Length = 400

 Score =  111 bits (278), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 76/107 (71%)

Query: 26  QKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           Q+  S  S     FQ F  G  +   ++I LIMD+P+++TVELGRT+  IK++L    GS
Sbjct: 294 QRQRSPVSVQPVQFQAFDDGLSATEKKNISLIMDLPLQVTVELGRTQKLIKDILEFGSGS 353

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           V+ LD LAGEP+DIL+NG  IA+GEVVV+ + +GVRITDII PS+R+
Sbjct: 354 VIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400


>UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes
           RepID=Q0AYM4_SYNWW
          Length = 398

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 71/84 (84%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           Q++DLIMD+P+ ++VELG+T+ TI E+L L QG+++ LD LAGEP+D+L+NG LIA+GEV
Sbjct: 314 QNLDLIMDVPLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEV 373

Query: 112 VVVADKYGVRITDIITPSERMRRL 135
           VV+ + YG+RIT II+P +RM +L
Sbjct: 374 VVIDENYGIRITTIISPIDRMNKL 397


>UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halothermothrix orenii H
           168 RepID=B8CYQ5_HALOH
          Length = 375

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 75/97 (77%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F  F  G+ +   Q+++LI D+P+++TV LG+TRMTIK++L L +GS+V L+ LAGEP+D
Sbjct: 279 FPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVD 338

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +L+NG LIA+GEVVV+ + +G R+ DII+P ER+  +
Sbjct: 339 LLVNGKLIAKGEVVVIDENFGFRVKDIISPMERLNNI 375


>UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Bacillus cellulosilyticus DSM 2522
           RepID=D2LSG7_BACS4
          Length = 398

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 83/111 (74%), Gaps = 6/111 (5%)

Query: 27  KSTSSKSAAETVFQ--QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
           +S   + AA + F+  Q G  +     +++D+++DIP+++TVELGRT+ +IK++L LTQG
Sbjct: 292 RSAEVQPAAFSNFETPQLGNNEA----KNLDMLLDIPLEVTVELGRTKRSIKDILELTQG 347

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           S++ LD LAGEP+DIL+N  LIA+GEVVV+ + +GVR+TDI++  ER+  L
Sbjct: 348 SIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSKRERLNNL 398


>UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathway protein FliN n=9
           Tax=Xanthomonas RepID=Q3BU42_XANC5
          Length = 112

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 71/83 (85%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++D+I+D+PV L++E+GR R+ I+ LL+L QGSVV L+  AGEPLD+ +NG LIA GEVV
Sbjct: 29  NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVV 88

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           V+ D++G+R+TD+++PSER+RRL
Sbjct: 89  VINDRFGIRLTDVVSPSERIRRL 111


>UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desulfotomaculum
           reducens MI-1 RepID=A4J737_DESRM
          Length = 411

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 73/86 (84%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++DLI+DIP+K++V LGRT+  IK++L++  GSVV LD LA EP+DIL+NG L+A GEV
Sbjct: 324 RNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEV 383

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
           VVV + +G+RIT+II+P ER++RLS+
Sbjct: 384 VVVNENFGIRITNIISPMERVKRLSK 409


>UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein n=4
           Tax=Deltaproteobacteria RepID=Q30VB8_DESDG
          Length = 175

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 71/84 (84%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++D I+DIP+ ++ ELGRTR+ I ELL+L QGSVV L+ LAGEPL+I +NG L+A+GE 
Sbjct: 91  RELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEA 150

Query: 112 VVVADKYGVRITDIITPSERMRRL 135
           VV+ +K+GVR+TDII+P ER+++L
Sbjct: 151 VVINEKFGVRLTDIISPIERVKQL 174


>UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicutes
           RepID=A4IMA6_GEOTN
          Length = 393

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGT-LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
           E++S + +      F +F    ++ T  ++++L+ D+P+++TVELGRT+ +++E+L+L+ 
Sbjct: 281 EEESVAERHIQAADFAEFDDPPLAATEARNLELLFDVPLQVTVELGRTKRSVQEILQLSA 340

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           GS++ LD LAGEP+DI +N  LIA+GEVVV+ + +GVRITDI++ ++R++RL
Sbjct: 341 GSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVRITDIVSQNDRLKRL 392


>UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Proteobacteria
           RepID=C6BUR6_DESAD
          Length = 229

 Score =  108 bits (270), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 14/132 (10%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVS--------------GTLQDIDLIMDIPVKL 64
           WA AL+E      +   E  F +    D                G+ +D+D I+DIP+ +
Sbjct: 98  WAAALAEDTGDDIRKEKEQEFLRTQTRDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDV 157

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           + ELGR +M I ELL+L  GSVV L  LAGEPL+I +NG L+A+GE VV+ +K+G+R+TD
Sbjct: 158 SAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINEKFGIRLTD 217

Query: 125 IITPSERMRRLS 136
           II+P ER++ L+
Sbjct: 218 IISPIERVKHLA 229


>UniRef50_B8FK37 Flagellar motor switch protein FliN n=3 Tax=Bacteria
           RepID=B8FK37_DESAA
          Length = 119

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 68/82 (82%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +D I+DIP+ +TVELGRT M IK+LL+L QG+VV L  LAGEP++I +NG L A+GEVVV
Sbjct: 37  LDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVV 96

Query: 114 VADKYGVRITDIITPSERMRRL 135
           V +K+GVR+TDI++P ER++ L
Sbjct: 97  VNEKFGVRLTDIVSPQERIKSL 118


>UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Thermotogaceae
           RepID=A5IJA7_THEP1
          Length = 346

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 70/84 (83%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L++DIP+++TVELGRTRMT+K +L +  GS++ LD L GEP+DIL+NG LIA+GEVVV
Sbjct: 263 LELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVV 322

Query: 114 VADKYGVRITDIITPSERMRRLSR 137
           + + +GVRIT+I++P ER+  L+ 
Sbjct: 323 IDENFGVRITEIVSPKERLELLNE 346


>UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion protein n=5
           Tax=Bacteria RepID=B2A359_NATTJ
          Length = 422

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 71/87 (81%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
           G   +I+LIMD+P+++TVELG+T+  I+E+L L  GS++ LD +AGEP+DI +NG LIA+
Sbjct: 335 GENSNIELIMDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAK 394

Query: 109 GEVVVVADKYGVRITDIITPSERMRRL 135
           GEVVV+ + +G+RIT+II+P ER+ +L
Sbjct: 395 GEVVVIDENFGIRITEIISPVERINKL 421


>UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria
           RepID=FLIY_BACSU
          Length = 378

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 75/98 (76%), Gaps = 1/98 (1%)

Query: 39  FQQFGGGD-VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
           F  F   + V   + ++D+++DIP+ +TVELGRT+ ++KE+L L+ GS++ LD LAGEP+
Sbjct: 280 FSAFDPNEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPV 339

Query: 98  DILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           DIL+N  ++A+GEVVV+ + +GVR+TDI++ +ER+  L
Sbjct: 340 DILVNQRIVAKGEVVVIEENFGVRVTDILSQAERINNL 377


>UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Ammonifex degensii KC4 RepID=C9R9W6_AMMDK
          Length = 360

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 69/84 (82%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++LI+DIP+K++V LGRTR  IKE+L L  GS++ LD LA EP++IL+NG L+A+GEVVV
Sbjct: 273 LELILDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVV 332

Query: 114 VADKYGVRITDIITPSERMRRLSR 137
           V + +GVRIT I+TP ER+R L+R
Sbjct: 333 VEENFGVRITSIVTPQERLRYLAR 356


>UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Exiguobacterium RepID=B1YI92_EXIS2
          Length = 376

 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
           EA  EQK       +   F QF      G   +I ++ D+P+ +TVELGRTR +++++L 
Sbjct: 263 EAPPEQKK-EPVGVSPVQFGQFSEVQQEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILE 321

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133
           LTQGS++ LD LAGEP+D+ +N  LIA GEVVV+ + +GVRIT+I+   ER+R
Sbjct: 322 LTQGSIIELDKLAGEPVDVFVNNTLIATGEVVVIEENFGVRITEIVNTKERLR 374


>UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion protein n=15
           Tax=Bacteria RepID=C6D2V9_PAESJ
          Length = 421

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 72/83 (86%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           +++L++DIP+K+TVELGRT+  IK++L L+QGS++ LD LAGEP+DIL+N  LIA+GEVV
Sbjct: 338 NLNLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVV 397

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           V+ + +GVR+TDI++  +R+++L
Sbjct: 398 VIDENFGVRVTDIVSQWDRIQKL 420


>UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms RepID=B9PA59_POPTR
          Length = 284

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 69/84 (82%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + ID ++D+P+ ++V +G  RM IK+LL+L QGSVV LD LAGEP++ILIN  L+A+GEV
Sbjct: 201 ESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEV 260

Query: 112 VVVADKYGVRITDIITPSERMRRL 135
           V+V DKYGVR+TDI++P ER++ L
Sbjct: 261 VMVNDKYGVRLTDIVSPIERIKSL 284


>UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=5 Tax=Bacteria
           RepID=B0THB7_HELMI
          Length = 375

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 70/83 (84%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++ LIMD+P+++TVELG++R TI+++L L  GSV+ LD LAGEP+DIL+NG LIA+GEVV
Sbjct: 292 NLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVV 351

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           V+ + +GVRITDI++P ER+  L
Sbjct: 352 VIDENFGVRITDIVSPIERIGNL 374


>UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clostridium thermocellum
           RepID=A3DCN7_CLOTH
          Length = 406

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 72/95 (75%), Gaps = 1/95 (1%)

Query: 39  FQQFG-GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
           F+ F  G  +S   ++I LIMD+P+++TVELGRT   IK++L    GS++ LD LAGEP+
Sbjct: 312 FEAFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPV 371

Query: 98  DILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           DIL+NG +IA GEVVV+ + +GVRITDI+ PS+R+
Sbjct: 372 DILVNGKVIAIGEVVVIDESFGVRITDILHPSKRL 406


>UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) n=1
           Tax=Coprothermobacter proteolyticus DSM 5265
           RepID=B5Y7F0_COPPD
          Length = 287

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 71/89 (79%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
           GD+    ++++L++D+ V ++VELGR+R++IK+LL L  GS++ LD LAGEP+DIL+NG 
Sbjct: 196 GDIQPLPRNLELLLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGK 255

Query: 105 LIAQGEVVVVADKYGVRITDIITPSERMR 133
            IA+GEVVV+ + +GVRI DII P ER++
Sbjct: 256 PIAKGEVVVIDESFGVRILDIIAPKERLK 284


>UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae
           RepID=A6LMJ7_THEM4
          Length = 370

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 80/117 (68%), Gaps = 4/117 (3%)

Query: 23  LSEQKSTSSKSAAETVFQQF-GGGDVSGT---LQDIDLIMDIPVKLTVELGRTRMTIKEL 78
           +SE    +  S +   FQ F  GG V  T    + I  ++DIP+ + VELG+T++T+K++
Sbjct: 253 MSENIQKNPVSVSPVQFQSFESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQV 312

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           + L+ GS++ LD L GEP+DI++NG LIA+GEVVV+ + +GVRIT+I++P ER   L
Sbjct: 313 MELSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVSPQERFYTL 369


>UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Thermotoga
           RepID=A8F896_THELT
          Length = 343

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 67/79 (84%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L++D+P+K+ VELGR +MT+K++L +  GS++ LD L GEP+DIL+NG LIA+GEVVV
Sbjct: 256 LELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVV 315

Query: 114 VADKYGVRITDIITPSERM 132
           V + +GVRIT+I+TP +R+
Sbjct: 316 VDENFGVRITEIVTPKQRI 334


>UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion protein n=4
           Tax=Bacteria RepID=B8FTQ8_DESHD
          Length = 417

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 72/96 (75%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F     GD     ++++LI+D+P++++VELG+ + TIKE+L L  GSV+ LD LAGEP+D
Sbjct: 317 FVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVD 376

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           +++NG LIA+ EVVV+ + +G+RITDI+ P ERM +
Sbjct: 377 MIVNGKLIAKCEVVVINETFGIRITDIVQPGERMTK 412


>UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZF88_BREBN
          Length = 455

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 39  FQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
           F   GG  + +G +Q+++L+ DIP+++TVELGRT+  I+E+L L+ GS++ LD LAGE +
Sbjct: 357 FAPLGGAPMYTGDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHV 416

Query: 98  DILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           DIL+N  LIA+GEVVV+ + +GVR+TDII+  +R+++L
Sbjct: 417 DILVNNKLIAKGEVVVIDENFGVRVTDIISQIDRVQKL 454


>UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion protein n=5
           Tax=Thermoanaerobacterales RepID=B0K9T5_THEP3
          Length = 375

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 73/101 (72%), Gaps = 3/101 (2%)

Query: 38  VFQQFGGGDVSGTLQD---IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           VFQ F     S   +D   +DLI+D+P+ +TVELG+T+  IK++L L++GS++ LD LAG
Sbjct: 274 VFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIELDKLAG 333

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           EP+DIL NG  IA+GEVVV+ + +GVRI DI+  S+R+  +
Sbjct: 334 EPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRISNI 374


>UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspira
           RepID=C0R179_BRAHW
          Length = 360

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 1/92 (1%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           DV GT  +I L+MD+ + +TVELGR  MTI+++L L +GS++ L  LAGEP+D+L+NG L
Sbjct: 270 DVQGT-GNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKL 328

Query: 106 IAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           IA+GEVVV+ + +GVR+TDII P +R+    R
Sbjct: 329 IAKGEVVVIDENFGVRVTDIINPMDRLTNKPR 360


>UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema pallidum
           RepID=B2S3V9_TREPS
          Length = 348

 Score =  101 bits (252), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
           S S +S      Q   GG   G   +I LIMD+ +++TVELGRTRM IK++L + +G ++
Sbjct: 244 SPSVQSVQFHPLQNAAGGAEQG---NIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHII 300

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
            LD LAGEP+DIL+N  LIA+GEVVV+ + +GVR+T+I++P ER+
Sbjct: 301 ELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVTEILSPGERI 345


>UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria RepID=A5D0K1_PELTS
          Length = 422

 Score =  101 bits (252), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 65/84 (77%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +DLI+DIP+K+TV LGRTR  IK++L LT GSVV L  L  EP+++L+NG L+A GEVVV
Sbjct: 339 LDLILDIPLKVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVV 398

Query: 114 VADKYGVRITDIITPSERMRRLSR 137
           V + +GVRIT II P ER++ L R
Sbjct: 399 VNENFGVRITSIIGPEERLQNLRR 422


>UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clostridia
           RepID=A6TRP4_ALKMQ
          Length = 393

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           FQ F      G  ++I LI D+P+ +TVELGRT   I E+L    G+++ L+ + GEPLD
Sbjct: 297 FQSFDQQSNRGLPENIALIQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLD 356

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           IL+NG  +A+GEVVV+ + YG+RITDI+ P++R+ ++
Sbjct: 357 ILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRLSKI 393


>UniRef50_A4A5Y8 Flagellar motor switch protein fliN n=3 Tax=unclassified
           Gammaproteobacteria RepID=A4A5Y8_9GAMM
          Length = 117

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 69/84 (82%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D+DL+MD+ V L+VE+GRT++ IK+LL L QGS+V+LD    EPLD+++NG LIA+GEVV
Sbjct: 34  DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVV 93

Query: 113 VVADKYGVRITDIITPSERMRRLS 136
             A ++G+R+ D+++PSER+++L 
Sbjct: 94  ESAGQFGLRLIDVVSPSERLKKLK 117


>UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Dethiosulfovibrio
           peptidovorans DSM 11002 RepID=C1TKI4_9BACT
          Length = 384

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 66/83 (79%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           +I LI DIPV++TVELGRTR ++ E+L    GSV+ LD +AGEP+D+L+NG LIA+GEVV
Sbjct: 300 NIGLIADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVV 359

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           V+ + +GVR+T+I+   E+++ +
Sbjct: 360 VIDENFGVRVTEILNVGEKIQSI 382


>UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I888_9CLOT
          Length = 370

 Score = 98.2 bits (243), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 74/97 (76%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F+    G V  + ++IDLI+D+P++++V LGRT+ +IK++L L+ GS++ LD LA EP++
Sbjct: 273 FEPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVE 332

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +LING  IA GEVVVV + +GVRIT I++ ++R+R L
Sbjct: 333 VLINGKKIAYGEVVVVDENFGVRITSIVSGADRIRTL 369


>UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BEY5_PETMO
          Length = 372

 Score = 97.8 bits (242), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 68/85 (80%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           L  ++L++D+P++L VELG T++ ++E+L L +GS++ L+ LAGEPLDI  NG LIA+GE
Sbjct: 287 LSKLELLLDVPLELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGE 346

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VVV+ + +G+R+T+I++  ERM+ L
Sbjct: 347 VVVIDENFGIRVTEIVSLRERMKTL 371


>UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W1I6_DESAS
          Length = 572

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 66/82 (80%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           I+LI+D+P+ +TV LG+T+  IK++L LT GSVV L  L  EP+++L+NG L+A+GEVVV
Sbjct: 488 INLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVARGEVVV 547

Query: 114 VADKYGVRITDIITPSERMRRL 135
           V + +GVRIT++ITP ER++ L
Sbjct: 548 VNENFGVRITNVITPQERIQYL 569


>UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lactobacillus ruminis
           ATCC 25644 RepID=C2ED81_9LACO
          Length = 409

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 70/98 (71%), Gaps = 3/98 (3%)

Query: 39  FQQF-GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
           FQ   G   V G   ++DL+MDIP+ L+V LG ++ +++E+L    GSV+ L+ L  EPL
Sbjct: 313 FQTLDGHAQVEG--DNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPL 370

Query: 98  DILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           DIL+NG LIAQGEVVV+ D +GVRIT+I++ S+R+  +
Sbjct: 371 DILLNGKLIAQGEVVVINDNFGVRITNILSQSQRINNM 408


>UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridiales
           RepID=C4ZAN3_EUBR3
          Length = 404

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 62/76 (81%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           ++IDLIMD+P+++TVELGRT+ +I E+L    G ++ L+ LAGEP+DIL+NG  +A+GEV
Sbjct: 320 ENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEV 379

Query: 112 VVVADKYGVRITDIIT 127
           VV+ + +GVRIT+I+ 
Sbjct: 380 VVIEESFGVRITEIVN 395


>UniRef50_B2V6S4 Flagellar motor switch protein FliN n=3 Tax=Sulfurihydrogenibium
           RepID=B2V6S4_SULSY
          Length = 194

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 89/146 (60%), Gaps = 11/146 (7%)

Query: 2   SDMNNPADDNNGAMDDL---WAEALSEQKSTS-SKSAAETVFQQ------FGGGDVSGT- 50
           S+M N +    G+ +DL   W+E L E+KS S   +  +T  ++      F   + S   
Sbjct: 44  SEMLNESGKKEGSQEDLAAQWSEMLHEEKSESVDANTHQTPLKESEKKESFTKEEFSPEI 103

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           L  +D+++DIP+ +TVE+G   M+I+E+L+L   SV+ LD    EP+D+ +NG L+A+GE
Sbjct: 104 LNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGE 163

Query: 111 VVVVADKYGVRITDIITPSERMRRLS 136
           +  V D + ++IT+I+T  ER+R +S
Sbjct: 164 LYQVDDNFAIKITEILTKEERVRLVS 189


>UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=Clostridium
           botulinum D str. 1873 RepID=C5VT98_CLOBO
          Length = 394

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 71/97 (73%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F      +++G  Q+IDLI+D+P++++V LG+T+ +IK++L L  GS++ LD LA EP++
Sbjct: 296 FAPLQESNINGAPQNIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVE 355

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           I +NG  IA GEVVVV + +GVRI +I++  ER++ L
Sbjct: 356 IYVNGKKIAYGEVVVVDENFGVRIVNIVSGEERVKSL 392


>UniRef50_Q89AZ3 Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola
           (Baizongia pistaciae) RepID=FLIN_BUCBP
          Length = 134

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           +D+      E K   SK+  +         D+S  ++    IMD+PV LT+E+G  ++TI
Sbjct: 19  EDIKKSCEIEDKIFHSKTVNDVDLNLNSKNDISSKMK---FIMDVPVHLTIEVGTVKITI 75

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           K+LL L   S++ LD  AG+PL+IL+NGY+IA GE+VV  +KYG+RI +II  S
Sbjct: 76  KDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTENKYGIRIINIIDNS 129


>UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kineococcus
           radiotolerans SRS30216 RepID=A6W8L1_KINRD
          Length = 249

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 65/90 (72%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F   G    +G  + +DL+ D+ + +TVELGRT MT+++LL LT GSVV LD  AG P D
Sbjct: 156 FAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPAD 215

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITP 128
           +L+NG LIA+GEVVVV + Y +RIT+I+TP
Sbjct: 216 VLVNGQLIARGEVVVVDEDYAIRITEIVTP 245


>UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobacillales
           RepID=A8U602_9LACT
          Length = 360

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 71/98 (72%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           FQ+        T +++DLIMD+P++ +V LG ++ TIK++L L  GSVV L+ +  EPL+
Sbjct: 263 FQELTHAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLE 322

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           I +NG LIA+GEVVV+ + +G+RIT+I++  +R++ L+
Sbjct: 323 IYVNGKLIAEGEVVVINESFGIRITNILSKEQRIKHLN 360


>UniRef50_B9KJD9 Flagellar switch protein n=5 Tax=Rhodobacter sphaeroides
           RepID=B9KJD9_RHOSK
          Length = 98

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 66/80 (82%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++ L+ +I V+LTVE+GRT MTI++LLRL++GSVV LD LAG+PLD+L+NG  IA+GEV
Sbjct: 15  ENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEV 74

Query: 112 VVVADKYGVRITDIITPSER 131
           V+V +++G+R   II P +R
Sbjct: 75  VMVGERFGIRFGQIIEPEKR 94


>UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C1A4_SPHTD
          Length = 144

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 67/111 (60%)

Query: 22  ALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRL 81
           A  EQ    + S     F        SG  Q I+ + D+ V+LT ELG  RM IK +L L
Sbjct: 31  APGEQAGGEAASVHPAAFMALSQETQSGGPQSIEFLRDVEVELTAELGTARMQIKHILGL 90

Query: 82  TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
             GSVV L+ LAGEP+DI++N  LIA+GEVVVV +K+ VR+ +I+ P  R+
Sbjct: 91  RPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDEKFAVRVVEIVPPERRL 141


>UniRef50_Q4JMS2 Predicted flagellar motor switch protein n=3 Tax=Bacteria
           RepID=Q4JMS2_9BACT
          Length = 110

 Score = 95.1 bits (235), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 78/110 (70%), Gaps = 3/110 (2%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +SE+   +  +A ET+  +     VS   +++ L+ +I V LTVE+G+  + I++LLRL 
Sbjct: 1   MSEETELAEDAATETMDAE-TAARVSA--ENMRLLENIDVALTVEVGKAEIKIRDLLRLN 57

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           +GSV+ LD LAG+PLDIL NG +IA+GEVV+V +++G+R T+I+ P+ RM
Sbjct: 58  EGSVIELDRLAGDPLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARM 107


>UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clostridium
           RepID=A6M1D2_CLOB8
          Length = 398

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 69/85 (81%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           +++IDLI+D+P+ ++V LGRT+ +I+++L L  GS++ LD LA EP++IL+NG  IA GE
Sbjct: 313 IKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGE 372

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VVVV + +G+RIT+I++  ER++RL
Sbjct: 373 VVVVDENFGIRITNIVSSVERIKRL 397


>UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Bacteria RepID=A9KNE6_CLOPH
          Length = 401

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 35  AETVFQQF-GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
           A   FQ F   G      ++IDL++D+P+++TVELGRT  +I+E+L    G++V L+ LA
Sbjct: 308 APAQFQPFVNTGSPLLQTENIDLLLDVPLEVTVELGRTSKSIREILDFAPGTIVELNRLA 367

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           GEP+D+L+NG  +A+GEVVV+ + +G+R+TDII
Sbjct: 368 GEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDII 400


>UniRef50_Q1NP93 Surface presentation of antigens (SPOA) protein n=2
           Tax=Deltaproteobacteria RepID=Q1NP93_9DELT
          Length = 136

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 68/84 (80%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           Q++D ++D+P+++TVELGRT M I +LL+LTQGSVV LD  AG  ++I +N  L+ +GEV
Sbjct: 52  QNLDFLLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEV 111

Query: 112 VVVADKYGVRITDIITPSERMRRL 135
           VVV +++G+R+T+II+ ++R++ +
Sbjct: 112 VVVNERFGIRVTEIISQADRIKSI 135


>UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G689_ABIDE
          Length = 370

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 62/75 (82%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           ++I LIMD+P+++TVELGRT  TIKE+L  + G+++ L+ LAGE +D+L+NG  +A+GEV
Sbjct: 295 ENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEV 354

Query: 112 VVVADKYGVRITDII 126
           VV+ D +G+RIT+I+
Sbjct: 355 VVIEDNFGIRITEIV 369


>UniRef50_Q6AJS8 Probable flagellar motor switch protein (FliN) n=1 Tax=Desulfotalea
           psychrophila RepID=Q6AJS8_DESPS
          Length = 123

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 69/86 (80%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + +D + D+P++++VE+GR+++ IK+LL + +G V+ L+ +AG+PLD+ +N  LIA+GE 
Sbjct: 38  RSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEA 97

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
           V++ DK+G+R+TD+++ S+R+ RL +
Sbjct: 98  VMIGDKFGIRLTDVVSASDRLERLGK 123


>UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) n=1
           Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5A1_THERP
          Length = 128

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 5/117 (4%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGD-----VSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           + L+  +  SS    ET  Q+    D     +    Q ID + D+ V+LT ELG  RM I
Sbjct: 6   DTLNRGQEPSSVRPPETPIQEARFVDLRDQPIGNGRQGIDFLRDVEVELTAELGSARMRI 65

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           K +L L  GSVV LD LAGEP+++ IN  LIA+GEVVVV +K+ VRIT+I++P +R+
Sbjct: 66  KHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDEKFAVRITEIVSPEKRL 122


>UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ
          Length = 347

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 77/118 (65%), Gaps = 4/118 (3%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           +  E L   K+T+ +   E   +QF    V  T + ++LI+DIP+K+ V LGRTR  IKE
Sbjct: 234 MAHEMLEGAKATNIEKKVEKAEEQF----VLPTDEKLELILDIPLKVEVVLGRTRRPIKE 289

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +L    G+++ LD L  E +++L+NG L+A+GE+VVV + +G++I  I++P ER+ ++
Sbjct: 290 ILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILSPKERLSKI 347


>UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax=Bacteria
           RepID=C4Z5H2_EUBE2
          Length = 437

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 68/94 (72%), Gaps = 3/94 (3%)

Query: 35  AETVFQQFGGGDVSGTLQ--DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92
           A   FQ F   DV+   Q  +I+LI D+P+++TVELGRT  +IK++L    G++V L+ +
Sbjct: 344 APAAFQPFAT-DVNPISQKENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKI 402

Query: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           AGE +D+L+NG  +A+GEVVV+ + +GVRIT+II
Sbjct: 403 AGESVDVLVNGKYVAKGEVVVIEESFGVRITEII 436


>UniRef50_Q7ULU7 Flagellar motor switch protein fliN n=1 Tax=Rhodopirellula baltica
           RepID=Q7ULU7_RHOBA
          Length = 141

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 71/103 (68%), Gaps = 5/103 (4%)

Query: 32  KSAAETVFQQFGGGDVSGT-----LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
           +S    V + F  GD+S         D+DL+ ++ + L +ELGRT+M ++E+LRL  GSV
Sbjct: 38  ESTERDVPRPFALGDLSPNSLGEAAHDVDLLGEVEMDLRIELGRTQMRLEEVLRLRAGSV 97

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           VALD LAG+P+DI +NG LIA+GEV+V+ D + VR+T+++  S
Sbjct: 98  VALDKLAGDPVDIYVNGRLIARGEVLVMNDNFCVRVTELVGAS 140


>UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 Tax=Conexibacter woesei DSM
           14684 RepID=UPI0001C312B0
          Length = 130

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 59/75 (78%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
            D+  + D+PV+L VE+GRTRMT+ E L L  GS+V L+ +AGEP+D+L+NG  IA GEV
Sbjct: 24  NDLGRLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEV 83

Query: 112 VVVADKYGVRITDII 126
           VV+ +++G+RITD++
Sbjct: 84  VVIDEEFGLRITDVL 98


>UniRef50_Q1Q6T3 Strong similar to flagellar motor switch protein FliN n=1
           Tax=Candidatus Kuenenia stuttgartiensis
           RepID=Q1Q6T3_9BACT
          Length = 120

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 78/120 (65%), Gaps = 11/120 (9%)

Query: 24  SEQKSTSSKSAAETVFQQF--------GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           +EQK  +  +     F Q          GG+    + ++DLI+D+ V ++VELGR  M I
Sbjct: 3   TEQKDDAQPTIESVEFSQLIPEEMDSQKGGE---GMPNLDLILDVTVPVSVELGRANMLI 59

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           K++L L+QGS+V L+ +AG P+++L+ G L+A+GEVVVV +++G++IT I  P +R+R L
Sbjct: 60  KDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVVVVEERFGLKITAICGPQDRVRNL 119


>UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKD7_MOOTA
          Length = 124

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 57/87 (65%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F         G   D   I D+P++L  ELGRTRMT+KE+L L  GSV+ LD LAGEP+D
Sbjct: 29  FAPLQPAPAPGVTADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVD 88

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDI 125
           +L+N   +A+GEVVV+ D +GVRI  +
Sbjct: 89  LLVNDIPLAKGEVVVINDAFGVRINSL 115


>UniRef50_B4U6V5 Flagellar motor switch protein FliN n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U6V5_HYDS0
          Length = 149

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 5/130 (3%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTV 66
           P   N+  +  LW EA+  Q  T  +S+AE    Q    D+S   +D+  I+DIP+ +TV
Sbjct: 23  PTPQNDEDLMKLWEEAIQAQAQT--ESSAENQQAQATTQDIS---KDLQRILDIPLSITV 77

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
            +G T +TIKELL L  GSV+ALD      + +  NG LIA+ E+VVV + +G+RI +II
Sbjct: 78  VIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEII 137

Query: 127 TPSERMRRLS 136
              ER++ L+
Sbjct: 138 EKEERVKSLA 147


>UniRef50_Q44903 Flagellar motor switch protein fliN n=21 Tax=Spirochaetales
           RepID=FLIN_BORBU
          Length = 113

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 61/71 (85%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L+MD+ ++LTVELGRT   IK++L +++G+++ LD LAGEP+DIL+NG ++A+GEVVV+ 
Sbjct: 38  LLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVID 97

Query: 116 DKYGVRITDII 126
           + +GVRIT+II
Sbjct: 98  ENFGVRITEII 108


>UniRef50_C0QPC5 Flagellar motor switch protein FliN n=2 Tax=Aquificales
           RepID=C0QPC5_PERMH
          Length = 190

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 63/86 (73%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + +DL+MDIP++++VE+G T + ++E+L+L   ++V LD    +P+D+ +NG LIA+GE+
Sbjct: 102 EKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGEL 161

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
             V D +G++IT IIT  ERM+ L+ 
Sbjct: 162 YTVEDHFGIKITSIITVQERMKLLTE 187


>UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jonesia denitrificans
           DSM 20603 RepID=C7R0I7_JONDD
          Length = 259

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 76/113 (67%), Gaps = 2/113 (1%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDV-SGTLQD-IDLIMDIPVKLTVELGRTRMTIKE 77
           A A + Q   S+ S  E   + F    + SGT  D + L+ D+ + LTVE+GR ++ +++
Sbjct: 144 ASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKLPVRQ 203

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           +L LT GS+V LD +AG P D+L+NG+L+A+GEVVVV + YG+R+T+II  +E
Sbjct: 204 VLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIIDTTE 256


>UniRef50_A1QZ73 Flagellar motor switch protein FliN n=7 Tax=Spirochaetaceae
           RepID=A1QZ73_BORT9
          Length = 114

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 61/71 (85%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L+MD+ +++TVELGRT   IK++L +++G+++ LD LAGEP+DIL+NG +IA+GEVVV+ 
Sbjct: 39  LLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVID 98

Query: 116 DKYGVRITDII 126
           + +GVRIT+II
Sbjct: 99  ENFGVRITEII 109


>UniRef50_C0C1N9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C1N9_9CLOT
          Length = 460

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 68/95 (71%), Gaps = 10/95 (10%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           +SA ET  Q+           +++LIM +P++++VE+GRT+  +K++L L +GS+V LD 
Sbjct: 368 QSAEETELQE----------SNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDK 417

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           LAGE +D+ +NG  IAQG+VVVV D +G+RIT+I+
Sbjct: 418 LAGEQVDLFVNGQCIAQGDVVVVDDNFGIRITEIL 452


>UniRef50_A0LDK9 Flagellar motor switch protein FliN n=1 Tax=Magnetococcus sp. MC-1
           RepID=A0LDK9_MAGSM
          Length = 137

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 3/101 (2%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           AE  F     GD+   L+   L+MD+P++++V LG     IK+LLRL +GS+V L+  A 
Sbjct: 39  AENPFDVSTDGDLPKNLE---LLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVELEKEAD 95

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +PL+I +N  L+A GEVV++ DK G+RITDI++  ER+  L
Sbjct: 96  DPLEIYVNDRLLAYGEVVMIKDKLGIRITDIVSLKERLENL 136


>UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM
           15702 RepID=B0MPD4_9FIRM
          Length = 419

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 77/115 (66%), Gaps = 1/115 (0%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +  Q + + ++A    F+ F     S   +++ L+MD+P++++VE+G T+  IK++L  +
Sbjct: 304 MQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFS 363

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           QG+++ L+  AG P+D+++NG LIA+G+VVV+ D + VRIT+I+  S+ M  L +
Sbjct: 364 QGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIVK-SKFMDSLGK 417


>UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67K24_SYMTH
          Length = 126

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 62/84 (73%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
           G   G    + L+ D+ ++LTVELG++R +++E+L +  GSV+ LD  AGE +D+L+NG 
Sbjct: 37  GSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQ 96

Query: 105 LIAQGEVVVVADKYGVRITDIITP 128
           L+A+GEVVV+ + YG+RIT++I P
Sbjct: 97  LVARGEVVVIGENYGIRITELINP 120


>UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LT68_ACIC1
          Length = 123

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 62/79 (78%), Gaps = 1/79 (1%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L+ ++ + +T ELGRTRMT++ELL L  G VV L+  AG P+D+ +NG LIA+GEVVV
Sbjct: 42  LELLQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVV 101

Query: 114 VADKYGVRITDIITP-SER 131
           + +++GVRI++I+ P SER
Sbjct: 102 IDEEFGVRISEIVGPDSER 120


>UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Actinosynnema mirum DSM
           43827 RepID=C6WJP8_ACTMD
          Length = 250

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 61/77 (79%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L+  + +++T ELGRTR+T++ELL L+ G+V+ LD  AG P D+L+NG LIA+GEVVV
Sbjct: 168 LELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVV 227

Query: 114 VADKYGVRITDIITPSE 130
           + + +G+R+T+II P +
Sbjct: 228 IDENFGIRVTEIIKPGD 244


>UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WWF9_ALIAD
          Length = 381

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDV---SGTLQDIDLIMDIPVKLTVELGRTR 72
           DD  A     +    S +     F  F  G     +  + ++ L+ D+P+ +TVELGR +
Sbjct: 258 DDAQAANRGREDEGPSVAVRRPAFPDFDEGVTPRDARPVANLSLLYDVPLNVTVELGRAK 317

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
             I+E+L L  GS++ LD LAGEP+DI +N   IA GEVVV+ + +GVR+TDI+   +R+
Sbjct: 318 KLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377


>UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Planctomyces
           limnophilus DSM 3776 RepID=C1ZEF0_PLALI
          Length = 193

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 16/139 (11%)

Query: 5   NNPADDNNGAMDDL------WAEALSEQKSTSS-------KSAAETVFQQFGGG---DVS 48
           + PA  N  A   L       A ALSE+    +       ++ A   F++FG       +
Sbjct: 52  HQPASRNTSAEQSLRQAEQQLAAALSEELPPRNMRGLPPGEAPARFEFEEFGTPFPTRAA 111

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
             +  +D + D+ + + +ELGRT + I E+++L +G+VV LD LAG+P+DIL+NG L+A+
Sbjct: 112 APVFPLDALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLAR 171

Query: 109 GEVVVVADKYGVRITDIIT 127
           GEV+V+ D + VRI +I+T
Sbjct: 172 GEVLVLNDNFCVRIAEILT 190


>UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MGA9_RHOM4
          Length = 293

 Score = 84.7 bits (208), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           ++ G G V G L   +L+ D+ +++ VELGR R+ + ++LRLT GS++ L+ L GEPL+I
Sbjct: 199 ERIGDGGVKGNL---ELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEI 255

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
             NG LIA+GE VV+ +++GVRIT ++T S +  +
Sbjct: 256 YANGRLIAEGEAVVIDEQFGVRITSLVTGSRQREK 290


>UniRef50_P57183 Flagellar motor switch protein fliN n=3 Tax=Buchnera aphidicola
           (Acyrthosiphon pisum) RepID=FLIN_BUCAI
          Length = 133

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 56/69 (81%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I+++PV +TVELG +R+ IK+ L+ ++GS++ L+    EPL+I +NG+LIA GE+VV+ +
Sbjct: 54  ILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE 113

Query: 117 KYGVRITDI 125
           KYG+RIT+I
Sbjct: 114 KYGIRITNI 122


>UniRef50_A8RWD0 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=A8RWD0_9CLOT
          Length = 368

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 59/75 (78%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++ LIMD+P+ ++VE+G+TR  +K++L  + G+VV LD  +  P+DI++NG LIA+GEVV
Sbjct: 285 NLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVV 344

Query: 113 VVADKYGVRITDIIT 127
           V+ D +GVRI++I+ 
Sbjct: 345 VIDDNFGVRISEIVN 359


>UniRef50_C2KZ02 Possible flagellar motor switch protein FliY n=1 Tax=Oribacterium
           sinus F0268 RepID=C2KZ02_9FIRM
          Length = 472

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F+  GGG       + +++M +P++++VE+GRTR  +K++L  TQGS+V LD +AGE  D
Sbjct: 377 FENEGGG-AGENPDNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQAD 435

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDII 126
           + +NG  IA+G++VVV + +G+RIT+I+
Sbjct: 436 LYVNGECIAKGDIVVVEENFGIRITEIL 463


>UniRef50_C0GJF1 Flagellar motor switch protein FliN n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJF1_9FIRM
          Length = 141

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 61/83 (73%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           +++ I+DIP++++V LG+T   I +++ L  G++V  D   GEP+DI +NG LIA+GEVV
Sbjct: 58  NLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVV 117

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           VV + +GVRI+ IITP +R+  +
Sbjct: 118 VVGEHFGVRISQIITPQQRIENM 140


>UniRef50_D2S982 Flagellar motor switch protein FliN n=1 Tax=Geodermatophilus
           obscurus DSM 43160 RepID=D2S982_9ACTO
          Length = 249

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 57/74 (77%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +DL+  + +++TVE+GRTRMT+ ELL L  G VV LD  A  P D+L+NG LIA+GEVVV
Sbjct: 164 LDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVV 223

Query: 114 VADKYGVRITDIIT 127
           V + +G+RI++I+T
Sbjct: 224 VDEDFGLRISEIVT 237


>UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moorella thermoacetica
           ATCC 39073 RepID=Q2RKB6_MOOTA
          Length = 395

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 59/86 (68%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           ++IDLI+D+P+ + V LG     I+++L L  G++V LD L  EP+ I +NG  IAQGEV
Sbjct: 310 RNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEV 369

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
           V+V + +GVRIT I+ P ER+  L +
Sbjct: 370 VIVNENFGVRITHILEPYERINHLRQ 395


>UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6CER1_9PLAN
          Length = 226

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 57/72 (79%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           + ++ + L +ELGRT + I+E+L++ +G VV LD LAG+P+DIL+NG +IA+GEV+V+ D
Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLND 212

Query: 117 KYGVRITDIITP 128
            + VR+ +II+P
Sbjct: 213 NFCVRVAEIISP 224


>UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Nocardioides sp. JS614
           RepID=A1SEN5_NOCSJ
          Length = 246

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 62/80 (77%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           +G  + I+++  + +++TVE+GR RMT++ELL L  G+V+ LD  AG P D+L+NG LIA
Sbjct: 162 TGDRRGIEMLHGVDMEVTVEIGRARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIA 221

Query: 108 QGEVVVVADKYGVRITDIIT 127
           +GEVVV+ + +G+RIT+I+T
Sbjct: 222 RGEVVVIDEDFGLRITEIVT 241


>UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobiluncus mulieris
           RepID=D0YPX2_9ACTO
          Length = 254

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 61/83 (73%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + + L+ D+ + LT E+GRT++ + ++L L+ GSV+ LD  AG   D+++NG LIA GE+
Sbjct: 171 ESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEI 230

Query: 112 VVVADKYGVRITDIITPSERMRR 134
           VVV ++YG+RIT+I++ +E+  R
Sbjct: 231 VVVDEEYGIRITEIVSLAEQQNR 253


>UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitratiruptor sp.
           SB155-2 RepID=A6Q2L3_NITSB
          Length = 133

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 82/142 (57%), Gaps = 18/142 (12%)

Query: 1   MSDMNNPADDNNGA-------MDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQD 53
           MS+  NP+ +   +        D+L A+  + Q+S  S++  E   ++            
Sbjct: 1   MSEETNPSPEEQNSEEQPELSPDELMAQQFA-QESYGSETEEEDRIEK----------SK 49

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
             +++D+P+ + VE+G T+M ++E+L+L   SVV L+    EP+D+ +NG +IA+GE+  
Sbjct: 50  FSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYT 109

Query: 114 VADKYGVRITDIITPSERMRRL 135
           V + +G++IT ++TP ER++ L
Sbjct: 110 VKNNFGLKITHVVTPEERLKIL 131


>UniRef50_C7M222 Flagellar motor switch protein FliN n=1 Tax=Acidimicrobium
           ferrooxidans DSM 10331 RepID=C7M222_ACIFD
          Length = 95

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 68/92 (73%), Gaps = 1/92 (1%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           +V  T  ++ ++ ++ ++L+VELGR RM ++ LL LT G V+ LD  A  P+D+L+NG L
Sbjct: 3   EVPETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTL 62

Query: 106 IAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +A+GEVVVV D++GVRI +II+ S+ + +L+R
Sbjct: 63  VAKGEVVVVDDEFGVRILEIIS-SDEVDQLTR 93


>UniRef50_D2R538 Flagellar motor switch protein FliN n=2 Tax=Planctomycetaceae
           RepID=D2R538_9PLAN
          Length = 212

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 64/93 (68%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           A   F+       SG    ++L+ D+ + L +ELGRT M ++++L+L +GSVV LD LAG
Sbjct: 115 APFAFRDLAAAPPSGEKATLELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAG 174

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           +P+DI +NG LIA+GEV+V+ D + VR+ ++++
Sbjct: 175 DPVDIYVNGRLIARGEVLVLNDNFCVRVAELLS 207


>UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arthrobacter
           chlorophenolicus A6 RepID=B8HEJ4_ARTCA
          Length = 238

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           + LI ++ + LTVE+GRTRM++++ L L  G V+ LD  AG P D+L+NG LIA GEVVV
Sbjct: 159 LSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVV 218

Query: 114 VADKYGVRITDIITPSERMR 133
           V   Y VRIT I+  +E +R
Sbjct: 219 VDQDYAVRITRILDTAEGLR 238


>UniRef50_A4SI07 Lateral flagellar motor switch protein, lfiN n=2 Tax=Aeromonas
           RepID=A4SI07_AERS4
          Length = 125

 Score = 81.3 bits (199), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 76/123 (61%), Gaps = 13/123 (10%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           MN+P D +   +D L+ + +S   S +   A  +  +Q          +D+     IPVK
Sbjct: 6   MNDPLDLD--GLDQLFGDDIS-MPSAADYMAPTSSSKQ----------RDLSFFRQIPVK 52

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +T+E+  T +++ EL+R+ +G+V+ LD LAGE LD+ +NG L+A+GEVVVV  KYG+R+ 
Sbjct: 53  VTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGKYGLRLV 112

Query: 124 DII 126
           D+I
Sbjct: 113 DVI 115


>UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P9X9_9FIRM
          Length = 446

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 37  TVFQQFG--GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           T F QF     D   +  ++DL+M + + ++VE+G+T+  IK+++   QG+V+ L+  AG
Sbjct: 341 TQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAG 400

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
            P+DI++NG L+A+G+VVV+ D +GVRIT+I+   E M  L
Sbjct: 401 APVDIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELMESL 441


>UniRef50_C6NYG7 Flagellar motor switch protein FliN n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NYG7_9GAMM
          Length = 120

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +DL++++P++++VELGRTRM  K +L+L+QGSV+ L+   GEPL I ING + A GE V+
Sbjct: 35  VDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTIYINGEIFAYGEAVL 94

Query: 114 V-ADKYGVRITDII 126
           V  +++GVR+T ++
Sbjct: 95  VNQERFGVRLTALV 108


>UniRef50_Q04RL4 Endoflagellar motor switch protein n=6 Tax=Leptospira
           RepID=Q04RL4_LEPBJ
          Length = 174

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           +++L+MD+ + LTVELGRT M IK++  L +G VV LD   GE LDIL NG+L+ +G++V
Sbjct: 95  NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGEDLDILANGHLVGRGKLV 154

Query: 113 VVADKYGVRITDIITPSERM 132
            + D YG++IT+I+  S R+
Sbjct: 155 AMDDFYGIQITEIVDQSRRL 174


>UniRef50_A5V6A7 Flagellar motor switch protein FliN n=4 Tax=Sphingomonadaceae
           RepID=A5V6A7_SPHWW
          Length = 107

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 64/95 (67%), Gaps = 1/95 (1%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
           G  +++G   ++ L+ DIP++L+VE+G T + + EL+ L  GSVV LD  A E LDI++N
Sbjct: 12  GAAELAGR-DNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVN 70

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           G L+A+GEVV V  K+G+R+ DI+    R+  + R
Sbjct: 71  GTLVAKGEVVTVNGKFGIRVVDIVAADARLPGIER 105


>UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacterales bacterium GD
           1 RepID=B6BN04_9PROT
          Length = 288

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 62/85 (72%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           + +I LIMD+ + + V +G+ +M +K++L +  GSV+ L+ LA +PLDIL++ ++IAQGE
Sbjct: 202 MNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGE 261

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VV+V   +GV+IT I +  ER+ +L
Sbjct: 262 VVIVDGNFGVQITSIGSKRERLTQL 286


>UniRef50_C1A552 Flagellar motor switch protein FliN n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A552_GEMAT
          Length = 141

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 57/73 (78%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           I +++D+ + +++ELGRT MT++E+LRL +GSV+ LD LAGEP+DI +     A+GEVVV
Sbjct: 57  IGMLLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVV 116

Query: 114 VADKYGVRITDII 126
           + + +GVRIT ++
Sbjct: 117 LGEHFGVRITRVL 129


>UniRef50_A4Y0Q2 Flagellar motor switch protein FliN n=1 Tax=Pseudomonas mendocina
           ymp RepID=A4Y0Q2_PSEMY
          Length = 123

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 52/73 (71%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           QD+     IPV +T+E+  T +T+KEL+ +  GSV+ALD LAGEPLD+ +NG L A+ EV
Sbjct: 40  QDLSFFGKIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEV 99

Query: 112 VVVADKYGVRITD 124
           VV+   YG+RI +
Sbjct: 100 VVMNGNYGLRIVE 112


>UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobiluncus curtisii
           ATCC 43063 RepID=C2BUL2_9ACTO
          Length = 250

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 58/76 (76%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + + L+ D+ + LT E+GRT++ + ++L L+ GSV+ LD  AG   D+++NG LIA+GE+
Sbjct: 165 ESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIARGEI 224

Query: 112 VVVADKYGVRITDIIT 127
           VVV ++YG+RIT+I++
Sbjct: 225 VVVDEEYGIRITEIVS 240


>UniRef50_Q2RZE3 Possible flagellar motor switch FliN n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2RZE3_SALRD
          Length = 250

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 63/93 (67%), Gaps = 4/93 (4%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
           G GD SGT +   L+ D+ +++ VELGR  + + ++L+LT GSVV L+ + GEPL +  N
Sbjct: 161 GDGD-SGTFK---LLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYAN 216

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           G LIA+GE VV+ +++GVRIT++ +   R +  
Sbjct: 217 GRLIAEGEAVVIDEQFGVRITNLASEGHREKAF 249


>UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas denitrificans DSM
           1251 RepID=Q30SP4_SULDN
          Length = 283

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 72/111 (64%), Gaps = 7/111 (6%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
           ++K+ S+K++A            S  + +I LIMD+ + + V +G+ +M +K++L +  G
Sbjct: 178 DRKNESNKNSATVSLS-------SDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIG 230

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           SV+ L+ LA +PLDIL++  +IA+GEVV+V   +GV+IT I T  ER+ +L
Sbjct: 231 SVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITSIGTKRERLNQL 281


>UniRef50_Q058C3 Flagellar motor switch protein, C-ring protein n=1 Tax=Buchnera
           aphidicola str. Cc (Cinara cedri) RepID=Q058C3_BUCCC
          Length = 134

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 56/82 (68%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           + +  L D   +  IPV LT+EL + ++TI+ELL+  +GS++ L+    +PL+I IN YL
Sbjct: 49  NANKVLFDSSALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYL 108

Query: 106 IAQGEVVVVADKYGVRITDIIT 127
           IA GE+VV  D YGV+IT ++T
Sbjct: 109 IAIGELVVNNDCYGVQITKLLT 130


>UniRef50_D0I457 Flagellar motor switch protein FliN n=2 Tax=Vibrionaceae
           RepID=D0I457_VIBHO
          Length = 116

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 58/85 (68%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
            D+  I +IPV LT+E+  T + + +L+ +  GSV+ LD L+GEP+D+ +NG L+   EV
Sbjct: 31  NDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHAEV 90

Query: 112 VVVADKYGVRITDIITPSERMRRLS 136
           VVV +KYG+R+ +++   + +R L+
Sbjct: 91  VVVNNKYGLRLVNVVDEKDMLRGLA 115


>UniRef50_Q0G104 Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0G104_9RHIZ
          Length = 131

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 61/83 (73%), Gaps = 3/83 (3%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D+DL++D+ V + V LG  RM++ ELL+L +GS+V LD   G+P+D+++NG +IA+GE+V
Sbjct: 41  DLDLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIV 100

Query: 113 VV---ADKYGVRITDIITPSERM 132
           V+     ++GV +T++ TP  ++
Sbjct: 101 VLDQDDQQFGVTLTEVATPGSKL 123


>UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SNF8_9BACT
          Length = 299

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 64/83 (77%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++DL++DI V ++V++G T+M +K++L +  G+++ LD  A EP++++IN  +IA+GEVV
Sbjct: 215 NLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARGEVV 274

Query: 113 VVADKYGVRITDIITPSERMRRL 135
           +V   +G RI +I++ +ER+++L
Sbjct: 275 IVDGYFGFRIKEIVSRAERIKKL 297


>UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sanguibacter keddieii
           DSM 10542 RepID=D1BCL8_SANKS
          Length = 247

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 59/78 (75%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++ L+ D+ + L+ E+GR ++ ++++L L  G+V+ LD +AG P D+++NG LIA+GEVV
Sbjct: 167 NLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVV 226

Query: 113 VVADKYGVRITDIITPSE 130
           V+ + YG+RIT+I+  +E
Sbjct: 227 VIDEDYGLRITEIVDLAE 244


>UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UW94_9AQUI
          Length = 164

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 55/74 (74%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +D +MDIP+ + V +G T + I+EL+ L  GSV+ LD    EP+DI +NG LIA+GE+VV
Sbjct: 74  LDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLIAKGELVV 133

Query: 114 VADKYGVRITDIIT 127
           V +K+GVRIT+I +
Sbjct: 134 VGEKFGVRITEIYS 147


>UniRef50_A1RF65 Flagellar motor switch protein FliN n=8 Tax=Shewanella
           RepID=A1RF65_SHESW
          Length = 128

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 18/105 (17%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
           ++LS+Q + S K      FQQ                  +PV++T+EL    M++ EL R
Sbjct: 31  KSLSKQDTQSRKLKNNNFFQQ------------------LPVQVTLELASAEMSLGELNR 72

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           + +G V+ALD + GEPLDI +NG L+ +GEVV VA +YGVR+ +I
Sbjct: 73  MGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 117


>UniRef50_A6F9R7 Flagellar motor switch protein n=1 Tax=Moritella sp. PE36
           RepID=A6F9R7_9GAMM
          Length = 122

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 54/75 (72%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +D+    +IP+ +T+E+  T++ I +L+ L+ G+V+ LD LA EPLD+ +NG L+A  EV
Sbjct: 39  KDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEV 98

Query: 112 VVVADKYGVRITDII 126
           VVV  KYGV++ D++
Sbjct: 99  VVVNGKYGVKLIDVV 113


>UniRef50_B6QZA8 Flagellar motor switch protein n=1 Tax=Pseudovibrio sp. JE062
           RepID=B6QZA8_9RHOB
          Length = 111

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
           GGG V    +D++ + D+PV+L   LG T+M + +LL L  G V+ LD   GE +D+ +N
Sbjct: 25  GGGGVKAA-EDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVN 83

Query: 103 GYLIAQGEVVVVADKYGVRITDII 126
             LIA+GEVV+V DK GV +T+II
Sbjct: 84  NRLIARGEVVLVEDKLGVTMTEII 107


>UniRef50_A5P6I8 Flagellar motor switch protein n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P6I8_9SPHN
          Length = 96

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           LI DI V+LTVELGR  M ++++L L + SV+ LD L  EPLD+ +NG LIA+GEV+   
Sbjct: 10  LIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQG 69

Query: 116 DKYGVRITDIITPS 129
           +++ +R+ +I+  S
Sbjct: 70  NRFAIRVLEIVGAS 83


>UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Candidatus Solibacter
           usitatus Ellin6076 RepID=Q01PP4_SOLUE
          Length = 282

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 59/82 (71%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L++D+ + +++  G+T + +K++L+LT GS+V L+    EP+++L+N  LIA+GEVVV
Sbjct: 200 MELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVVV 259

Query: 114 VADKYGVRITDIITPSERMRRL 135
           V   YGVRI  I+   +R+R +
Sbjct: 260 VEGNYGVRIQQIVNRQDRLRSI 281


>UniRef50_Q2WA21 Flagellar motor switch/type III secretory pathway protein n=6
           Tax=Rhodospirillales RepID=Q2WA21_MAGSA
          Length = 108

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 62/90 (68%), Gaps = 3/90 (3%)

Query: 40  QQFGGGDVSG---TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           ++ G GDV     + +D++ + DIPV+++  LG+  M + +LL+L +G+VV LD   GE 
Sbjct: 14  EEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEA 73

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDII 126
           +DI +N  L+A+GEVVVV D+ GV +T+II
Sbjct: 74  IDIYVNNRLVARGEVVVVEDRLGVTMTEII 103


>UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Helicobacter pylori
           RepID=B2USQ1_HELPS
          Length = 288

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 62/87 (71%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           +++I +++D+ + + V +G+ +M +K+++ +  GSVV LD L  +PL+IL++  +IA+GE
Sbjct: 202 IRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGE 261

Query: 111 VVVVADKYGVRITDIITPSERMRRLSR 137
           VV+V   +G++ITDI T  ER+ +L  
Sbjct: 262 VVIVDGNFGIQITDIGTKKERLEQLKH 288


>UniRef50_B1I5E1 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I5E1_DESAP
          Length = 127

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 64/110 (58%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
           +   L  +   + K      F+Q G   + G    ++ + D+ V ++ ELG+T MT++E 
Sbjct: 9   FLSGLDREPGPTVKKVQFPRFEQAGTPGMPGVRISLEYLDDVEVDVSAELGQTAMTVREF 68

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           L L +GSV+ LD  AGE +D+++NG  +A+GEV+V+ D + +RI  I  P
Sbjct: 69  LSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVINDLFVLRIHSIAHP 118


>UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campylobacterales
           RepID=Q17WT1_HELAH
          Length = 283

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 62/85 (72%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           +++I +++D+ + + V +G+ +M +K+++ +  GSVV LD L  +PL+IL++  +IA+GE
Sbjct: 197 IRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGE 256

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VV+V   +G++ITDI T  ER+ +L
Sbjct: 257 VVIVDGNFGIQITDIGTKKERLEQL 281


>UniRef50_A4THZ3 Flagellar switch protein n=26 Tax=Enterobacteriaceae
           RepID=A4THZ3_YERPP
          Length = 137

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 46/66 (69%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IPV LT+E+    + + ELL +   SV+ LD LAGEPLDI +NG +  Q EVVV+ +KYG
Sbjct: 62  IPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYG 121

Query: 120 VRITDI 125
           +RI +I
Sbjct: 122 LRIINI 127


>UniRef50_A7K1M2 Flagellar motor switch protein FliN n=17 Tax=Vibrionaceae
           RepID=A7K1M2_VIBSE
          Length = 123

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSG--TLQ--------DIDLIMDIPVKLTVELGRTR 72
           +SE   T++  A E  F  F   D     TLQ        D+     IPV +T+E+    
Sbjct: 1   MSEAPETNAFDAEELNFDDFQLEDFEAESTLQQEPATAERDLSFFKSIPVTVTLEVASKE 60

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           + + +L++  +G+V+ L+ L GEPLD+ +NG L+   EVVVV DKYG+R+ D+
Sbjct: 61  IPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLRLIDV 113


>UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF0_9FIRM
          Length = 541

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 53/73 (72%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +DLI DIPV++T  LGR ++ +KEL+    GSVV L   A  P+DIL NG L+A+GEVV 
Sbjct: 463 LDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGKLVARGEVVH 522

Query: 114 VADKYGVRITDII 126
             +++G++IT+I+
Sbjct: 523 YNERFGIKITEIM 535


>UniRef50_Q0EZ61 Flagellar protein n=1 Tax=Mariprofundus ferrooxydans PV-1
           RepID=Q0EZ61_9PROT
          Length = 98

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 56/84 (66%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           +++ IM +P++++VELGR ++ +  + RL +G V+ ++  A   + IL NG + A+GEVV
Sbjct: 15  NLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQILANGSIFAKGEVV 74

Query: 113 VVADKYGVRITDIITPSERMRRLS 136
              DK GVRIT+I+  S R+  LS
Sbjct: 75  STGDKLGVRITEIVPASARISSLS 98


>UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding protein n=20
           Tax=Campylobacter RepID=A7GZX6_CAMC5
          Length = 286

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 61/85 (71%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           +++I+LIMD+ + + V +G  RM +K++L +  GSV+ L+ LA +PL+ILI   +IA GE
Sbjct: 201 MRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGE 260

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VV++   +G++IT I +  ER+++L
Sbjct: 261 VVIIDGNFGIQITQIGSKRERLQQL 285


>UniRef50_Q1GNY9 Flagellar motor switch FliN n=2 Tax=Sphingomonadaceae
           RepID=Q1GNY9_SPHAL
          Length = 111

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 57/85 (67%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           + DL+  + ++++VE+G T MT+ ELL L +GSV+ LD  A + LDI  NG LIA+GE+V
Sbjct: 25  NFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAKGEIV 84

Query: 113 VVADKYGVRITDIITPSERMRRLSR 137
            V  +YG+++ +++ P+  +    R
Sbjct: 85  SVDGRYGIQVAEVVAPARGLEGFER 109


>UniRef50_B1ZL53 Flagellar motor switch protein FliN n=6 Tax=Rhizobiales
           RepID=B1ZL53_METPB
          Length = 108

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 59/81 (72%), Gaps = 3/81 (3%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++D I+ IPV + V LG   M + +L++L +G+VV LD   GEP+D+++NG +IA+GE+
Sbjct: 22  RNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEI 81

Query: 112 VVVAD---KYGVRITDIITPS 129
           V+V +   ++GV +T+++ PS
Sbjct: 82  VIVEEDNSRFGVSLTEVVGPS 102


>UniRef50_Q03593 Flagellar motor switch protein fliN n=21 Tax=Alphaproteobacteria
           RepID=FLIN_CAUCR
          Length = 110

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 54/77 (70%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
           T  D+  + D+PV ++  LGR  M++ +LL+L QGS++ LD   GE +DI +N  L+A+G
Sbjct: 28  TAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARG 87

Query: 110 EVVVVADKYGVRITDII 126
           EVVVV ++ GV +T+II
Sbjct: 88  EVVVVDERLGVTMTEII 104


>UniRef50_Q11LL6 Flagellar motor switch protein FliN n=3 Tax=Phyllobacteriaceae
           RepID=Q11LL6_MESSB
          Length = 121

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 3/73 (4%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
            ++DIPV+L + LG   MT+ EL+ L +GS V+LD   GEP++I++NG LIA+GE+ ++ 
Sbjct: 42  FLVDIPVELQIVLGSAEMTVSELMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILE 101

Query: 116 D---KYGVRITDI 125
           +   ++GVR+T+I
Sbjct: 102 NDPSRFGVRLTEI 114


>UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibacter mediatlanticus
           TB-2 RepID=A6DBQ2_9PROT
          Length = 269

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 58/84 (69%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +D++MD+ ++L V +G+  M +K+++ +  GS+V LD LA EPLDILI    I +GEVV+
Sbjct: 185 LDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVI 244

Query: 114 VADKYGVRITDIITPSERMRRLSR 137
           V   +G++IT I + ++R+  + +
Sbjct: 245 VDGNFGIQITSIGSKADRLNSMKK 268


>UniRef50_B9Z4S4 Flagellar motor switch protein FliN n=1 Tax=Lutiella nitroferrum
           2002 RepID=B9Z4S4_9NEIS
          Length = 119

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 49/66 (74%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IPV LT+E+G   +++ +L+ + QGSV+ LD LAGEPLDI +NG +I + EVVV  D YG
Sbjct: 44  IPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAGDNYG 103

Query: 120 VRITDI 125
           +R+ ++
Sbjct: 104 LRVVEL 109


>UniRef50_B1ZR34 Flagellar motor switch protein FliN n=3 Tax=Verrucomicrobia
           RepID=B1ZR34_OPITP
          Length = 84

 Score = 71.2 bits (173), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 55/73 (75%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +D+++D+ VK+TV+LG  ++ ++E+L L+ GSVV L   A +P+ + +N  L+A GEVVV
Sbjct: 6   LDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVV 65

Query: 114 VADKYGVRITDII 126
           V D +G++IT+++
Sbjct: 66  VEDNFGIKITELV 78


>UniRef50_B8EL08 Flagellar motor switch protein FliN n=2 Tax=Beijerinckiaceae
           RepID=B8EL08_METSB
          Length = 110

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 57/80 (71%), Gaps = 3/80 (3%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           ++++ I+ IPV + V LG   M +  LL+L +G+V+ LD   GEP+D+++NG +IA+GE+
Sbjct: 26  RNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGEI 85

Query: 112 VVVAD---KYGVRITDIITP 128
           VVV D   ++GV +T+I+ P
Sbjct: 86  VVVEDDNSRFGVSLTEIVGP 105


>UniRef50_B1LV08 Flagellar motor switch protein FliN n=1 Tax=Methylobacterium
           radiotolerans JCM 2831 RepID=B1LV08_METRJ
          Length = 110

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 53/77 (68%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
           T  D++ + D+PV ++  LG  RM I +LLRL  G+V+ LD   GE +D+ +N  L+A+G
Sbjct: 31  TAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARG 90

Query: 110 EVVVVADKYGVRITDII 126
           EVV+V D+ GV +T+I+
Sbjct: 91  EVVLVEDRLGVTMTEIV 107


>UniRef50_A1UTV7 Flagellar motor switch protein fliY n=35 Tax=Rhizobiales
           RepID=A1UTV7_BARBK
          Length = 139

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 56/78 (71%), Gaps = 3/78 (3%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
            + +L+M IPV++ + LG T M +  L+ L +GSV+ L+   G+P+DI++NG +IA+GEV
Sbjct: 60  NNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDIVVNGRIIARGEV 119

Query: 112 VVVAD---KYGVRITDII 126
           +V+ D   ++GV +T++I
Sbjct: 120 IVLEDDSSRFGVSLTEVI 137


>UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XES1_9HELI
          Length = 283

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 60/85 (70%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           +++I +++DI + + V +G+ RM +K+++ +  GSVV L+ LA +PL+IL+N  +I +GE
Sbjct: 197 MRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLASDPLEILVNDKIIGKGE 256

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VVVV   + ++IT+I T  ER+  L
Sbjct: 257 VVVVDGNFAIQITEIGTKKERLESL 281


>UniRef50_A8AKJ4 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
           BAA-895 RepID=A8AKJ4_CITK8
          Length = 132

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 50/75 (66%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           ++ + L   IPV LT+E+    +++ EL+ +   SVV LD +AGEPLDI +NG L  + E
Sbjct: 48  IRKMALFSRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAE 107

Query: 111 VVVVADKYGVRITDI 125
           VVV+ DKYG+RI + 
Sbjct: 108 VVVLNDKYGLRIIEF 122


>UniRef50_A1T0L0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Psychromonas ingrahamii 37 RepID=A1T0L0_PSYIN
          Length = 120

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 49/76 (64%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + +  + DIPV +TVE+G   +T+KELL +   SV+ L    G+ LDI +NG L A GEV
Sbjct: 41  KSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEV 100

Query: 112 VVVADKYGVRITDIIT 127
           VV    YGV+ITDI+ 
Sbjct: 101 VVANGHYGVKITDIVN 116


>UniRef50_B6R821 Flagellar motor switch protein FliN n=2 Tax=Rhodobacteraceae
           RepID=B6R821_9RHOB
          Length = 138

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++D ++ IPV + V LG   M +  LL+L +G+V+ LD   GEP+DI++NG  +A+GE+
Sbjct: 54  RNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEI 113

Query: 112 VVVAD---KYGVRITDII 126
           VVV D   ++GV +T+I+
Sbjct: 114 VVVEDDNSRFGVSLTEIV 131


>UniRef50_O54245 Flagellar motor switch protein fliN n=15 Tax=Rhizobiales
           RepID=FLIN_RHIME
          Length = 198

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           SG   ++DLIMDIP+ + + LG +RM +  L+ LT+G+ +ALD   GEP++I++NG +I 
Sbjct: 113 SGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIG 172

Query: 108 QGEVVVV---ADKYGVRITDI 125
           +GE+ V+     ++GV++ +I
Sbjct: 173 RGEITVLEGDVTRFGVKLLEI 193


>UniRef50_B9JRN7 Flagellar motor switch protein FliN n=2 Tax=Rhizobiales
           RepID=B9JRN7_AGRVS
          Length = 220

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
            ++DLIMDIP+ + + LG +RM +  L+ L +G+++ALD   GEP++I++NG  IA+GE+
Sbjct: 138 SNLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEI 197

Query: 112 VVVAD---KYGVRITDIIT 127
            V+ +   ++GV++ ++++
Sbjct: 198 TVLENDDTRFGVKLIEVMS 216


>UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundicola AmH
           RepID=B9L5V0_NAUPA
          Length = 270

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 11/114 (9%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
           SE  ST SK+            ++ G ++++++++DI ++L V +G   M +K+++ +  
Sbjct: 168 SEGSSTPSKAV-----------ELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDI 216

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           GS+V L+ LA EPLDILI    I +GEVV+V   +G++IT I +  ER+  L +
Sbjct: 217 GSIVELNQLAKEPLDILIEDKKIGEGEVVIVDGNFGIQITSIGSREERLNSLKK 270


>UniRef50_Q18D12 Putative flagellar motor switch protein n=3 Tax=Clostridium
           difficile RepID=Q18D12_CLOD6
          Length = 124

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 60/79 (75%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I+D+ ++L+V +GRT+MT++++L L +GS++ LD LA + ++ILI+  ++A G+VVVV  
Sbjct: 45  ILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVVDL 104

Query: 117 KYGVRITDIITPSERMRRL 135
            +GV+IT I++  + ++ L
Sbjct: 105 NFGVKITSIVSEEDMVKSL 123


>UniRef50_Q57259 Flagellar motor switch protein fliN n=2 Tax=Rhizobium/Agrobacterium
           group RepID=FLIN_AGRT5
          Length = 179

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 60/83 (72%), Gaps = 3/83 (3%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           SG  +++++IMDIP+ + + LG +RM +  L+ L +G+ +ALD   GEP++I++NG  IA
Sbjct: 93  SGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIA 152

Query: 108 QGEVVVVAD---KYGVRITDIIT 127
           +GE+ V+ D   ++GV++ ++++
Sbjct: 153 RGEITVLEDDDTRFGVKLIEVLS 175


>UniRef50_B6IW97 Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum
           SW RepID=B6IW97_RHOCS
          Length = 105

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 57/86 (66%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           SG   + + I+ +PV+++V LGR RM I +LLRL    VV L+ + GEP+D+ +N  L+A
Sbjct: 11  SGETPERNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVA 70

Query: 108 QGEVVVVADKYGVRITDIITPSERMR 133
           +GE+VVV  + G+ I +++  + R R
Sbjct: 71  RGELVVVDGRLGLTIVELMPQASRGR 96


>UniRef50_C5JB71 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=uncultured bacterium RepID=C5JB71_9BACT
          Length = 117

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 55/78 (70%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++ + ++PV++T  LG   + + ++L+L +G+VV LD + GEP+DI  N  LIA+GEVVV
Sbjct: 40  MEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVV 99

Query: 114 VADKYGVRITDIITPSER 131
           V D+  ++ITDII  + R
Sbjct: 100 VEDRLAIQITDIIRSNIR 117


>UniRef50_C9PEF6 Flagellar motor switch protein FliN n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PEF6_VIBFU
          Length = 128

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 52/80 (65%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           +G   ++ LI DIPV++TVE+ R R+ +KE++ +   SV+ LD   GEP+DI ING L  
Sbjct: 44  TGNKSNMGLIRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFG 103

Query: 108 QGEVVVVADKYGVRITDIIT 127
            G +++   KYGV++  ++ 
Sbjct: 104 TGNIIIQDGKYGVQVLALVN 123


>UniRef50_A9HHD1 Flagellar motor switch protein FliN n=2 Tax=Rhodospirillales
           RepID=A9HHD1_GLUDA
          Length = 125

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 5/114 (4%)

Query: 15  MDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMT 74
           ++D  + A S   +    SA     +Q  G D SG ++    + DIPVK+T  +G   M 
Sbjct: 10  LEDFSSAAPSPAGAEPDGSATAAGRKQKNG-DGSGQME---AVYDIPVKITAVIGSATMP 65

Query: 75  IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY-GVRITDIIT 127
           + +LL+L +G+VV LD   GE +DI  N  LIA+GEVVVV D + GV +T+II+
Sbjct: 66  VSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEIIS 119


>UniRef50_A5FYJ9 Flagellar motor switch protein FliN n=17 Tax=Alphaproteobacteria
           RepID=A5FYJ9_ACICJ
          Length = 132

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +D++ + D+PV ++  LGR+ M + +LL+L +G+VV LD  AG+P+DI +N  LIA+GEV
Sbjct: 51  RDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIARGEV 110

Query: 112 VVVAD-KYGVRITDII 126
           V++ + K G+ +T+I+
Sbjct: 111 VMLDETKLGITMTEIV 126


>UniRef50_A5D0I4 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Pelotomaculum thermopropionicum SI
           RepID=A5D0I4_PELTS
          Length = 126

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 50/67 (74%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           D+ ++++VELG+T M ++E+L L QGSV+ LD   GE +++++N    A+GEVVV+ D +
Sbjct: 47  DVQIEISVELGQTVMKVREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDSF 106

Query: 119 GVRITDI 125
           GVRIT I
Sbjct: 107 GVRITSI 113


>UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulfurospirillum
           deleyianum DSM 6946 RepID=D1B0L6_SULD5
          Length = 286

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 58/85 (68%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           + +I+LI D+ + + V +G  +M +K++L +  GSV+ LD LA +PL+IL+   +IA GE
Sbjct: 201 ISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGDKVIAMGE 260

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VV+V   +GV+I +I T  ER+ +L
Sbjct: 261 VVIVDGNFGVQIGEIGTKRERLEKL 285


>UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67MU5_SYMTH
          Length = 227

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 50/74 (67%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           +++DI + L+VELG+ R+ + E+L +  GSV+ LD LA EPL++ +NG      EV+ + 
Sbjct: 149 VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIG 208

Query: 116 DKYGVRITDIITPS 129
           +KYG+RI +   P+
Sbjct: 209 EKYGIRIVESQLPN 222


>UniRef50_C8W1G7 Surface presentation of antigens (SPOA) protein n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W1G7_DESAS
          Length = 128

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
            I  I D+PV +T ELG   +T++E+L L+ G ++ LD LAGE + + IN     +GEV+
Sbjct: 40  SIKHIEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVM 99

Query: 113 VVADKYGVRITDIITPS 129
           V+ D YG+RIT +  P 
Sbjct: 100 VINDNYGIRITSVFKPH 116


>UniRef50_A8RWA3 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=A8RWA3_9CLOT
          Length = 320

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDI----DL 56
           M+DM  P  +  G    + A  +   +   + +  E  F +F    +    + I      
Sbjct: 189 MADM--PCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKK 246

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DI + ++V LG T  ++K++L L +G ++ LD  AG P D+++NG LI +G+V+V  D
Sbjct: 247 LLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306

Query: 117 KYGVRITDIITPSE 130
           ++G RI +++   E
Sbjct: 307 RFGARIIEVVGKRE 320


>UniRef50_Q07SI0 Flagellar motor switch protein FliN n=7 Tax=Alphaproteobacteria
           RepID=Q07SI0_RHOP5
          Length = 132

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 74/128 (57%), Gaps = 14/128 (10%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           +D++N A ++        A +  +    ++++A ET             L +++ I+ IP
Sbjct: 7   TDLSNAAAEHASEPFKPEAASFGKLADLAARAAEET-----------SRLTNLEPILRIP 55

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KY 118
           V + V LG   M + +L++L +G+V+ LD   GEP+++++NG ++A+G VVVV D   ++
Sbjct: 56  VTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRF 115

Query: 119 GVRITDII 126
           GV +T+I+
Sbjct: 116 GVSLTEIV 123


>UniRef50_C6XFK8 Putative flagellar motor switch protein n=1 Tax=Candidatus
           Liberibacter asiaticus str. psy62 RepID=C6XFK8_LIBAP
          Length = 147

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           + DLIM+IPVK+ + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ 
Sbjct: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127

Query: 113 VVAD---KYGVRITDIIT 127
           ++ +    +GVR+ +I+ 
Sbjct: 128 IMEEDDTHFGVRVIEILN 145


>UniRef50_C0GJH0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJH0_9FIRM
          Length = 150

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F +F         + ++    +PV L +ELG   +T++E+L L + S++ LD LAGE   
Sbjct: 53  FPEFVQAPQGAKERGVNFFESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAA 112

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDI 125
           + +NG  +A GEVVV+ D +G R+ ++
Sbjct: 113 LCVNGKPLASGEVVVINDNFGFRVAEV 139


>UniRef50_A5KY22 Flagellar motor switch protein n=2 Tax=Vibrionales
           RepID=A5KY22_9GAMM
          Length = 127

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           + +I L+  IPV +TVE+ R  + + ELL L  GSVV L+   G+P+DI ING     GE
Sbjct: 47  VSNISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGE 106

Query: 111 VVVVADKYGVRITDII-TPSE 130
           +V    +YGVR+  II  PS+
Sbjct: 107 IVSKNGQYGVRLLSIIKKPSK 127


>UniRef50_A3NFV2 Flagellar motor switch/type III secretory pathway protein n=9
           Tax=Betaproteobacteria RepID=A3NFV2_BURP6
          Length = 115

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 49/70 (70%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L+  IPV+LT+E+G   +++ EL+ + +G+V+ LD LAGEPL + +NG  +   EVVV  
Sbjct: 38  LLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSG 97

Query: 116 DKYGVRITDI 125
           + YG++I D+
Sbjct: 98  ENYGLKIIDL 107


>UniRef50_Q5DY32 Lateral flagellar export/assembly protein (FliN-like) n=9
           Tax=Enterobacteriaceae RepID=Q5DY32_ECOLX
          Length = 123

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L+  IPV LT+E+    + + +LL +   +V+ LD LAGEPLDI +N  L+ + EVVVV 
Sbjct: 44  LLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVN 103

Query: 116 DKYGVRITDIIT 127
           +KYG+R+ +  T
Sbjct: 104 EKYGLRVLEFNT 115


>UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW52_ARCB4
          Length = 289

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 55/80 (68%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
           V+ T ++++L+ ++ +KL+V LG   + +K++LR   G ++ L+ +  EPL+ILING  I
Sbjct: 199 VTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKI 258

Query: 107 AQGEVVVVADKYGVRITDII 126
            +GE V+V  K+G++I  II
Sbjct: 259 GEGEAVIVEGKFGLKIKRII 278


>UniRef50_Q8KA38 Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola
           (Schizaphis graminum) RepID=FLIN_BUCAP
          Length = 133

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 47/70 (67%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           ++ DI + +TVELG++++ IK+LL  ++GS++ L     +PL +  N  LIA GE+V   
Sbjct: 53  ILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVFSN 112

Query: 116 DKYGVRITDI 125
           +KYG+RI  I
Sbjct: 113 NKYGIRIISI 122


>UniRef50_A3SFT8 Surface presentation of antigens (SPOA) protein n=2
           Tax=Sulfitobacter RepID=A3SFT8_9RHOB
          Length = 114

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           + +D I  + + + V LGR+RM I ELL LT+GSV+ LD   GEP+DI+IN  ++A+G++
Sbjct: 32  KSLDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDL 91

Query: 112 V-VVADKYGVRITDII 126
           V V  D  GV + +I+
Sbjct: 92  VRVQGDSLGVALREIV 107


>UniRef50_B6IQ95 Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum
           SW RepID=B6IQ95_RHOCS
          Length = 119

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I ++PV + V LGRT M + +LL+L +G+VV L+   GE +D+ +N  LIA+GEVV+V D
Sbjct: 42  IFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEVVIVDD 101

Query: 117 -KYGVRITDII 126
            + GV +T+I+
Sbjct: 102 GRLGVTMTEIV 112


>UniRef50_Q2CGH8 Flagellar motor switch protein FliN n=3 Tax=Rhodobacteraceae
           RepID=Q2CGH8_9RHOB
          Length = 132

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 66/93 (70%), Gaps = 2/93 (2%)

Query: 36  ETVFQQFGGGDVSGTL-QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           +TV +   G  V+G   + I+ ++++ +++ + LGR+RM I +LL+L++GS++ LD   G
Sbjct: 33  QTVLENMVGEQVNGDGGRSIEAMLNVGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIG 92

Query: 95  EPLDILINGYLIAQGEVVVVAD-KYGVRITDII 126
           EP+D++++  L+A+G++V V D + GV +T+I+
Sbjct: 93  EPVDMIVSDRLVARGDLVRVGDNRVGVTLTEIV 125


>UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyphomonas neptunium
           ATCC 15444 RepID=Q0C2D2_HYPNA
          Length = 89

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 52/71 (73%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           ++MD+PV++ V LG  R+ ++EL+ L+ G +VAL+    EP+DI ++G L+A+G++VV  
Sbjct: 12  MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKLVVTD 71

Query: 116 DKYGVRITDII 126
            + GV +++II
Sbjct: 72  GQLGVTLSEII 82


>UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9Y4_AMMDK
          Length = 114

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 53/77 (68%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L+  + +++T  LG   +T++ELL L +GSV+ LD +AGE +D+L++G    +GEV+V
Sbjct: 27  LELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGRGEVMV 86

Query: 114 VADKYGVRITDIITPSE 130
           + +++ VR+  +  P E
Sbjct: 87  LNERFVVRVLQVFPPQE 103


>UniRef50_A3WGR5 Flagellar motor switch protein n=1 Tax=Erythrobacter sp. NAP1
           RepID=A3WGR5_9SPHN
          Length = 102

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 49/68 (72%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           D+ V+L+VELGRT M +K++L + +GSVV L+ L  E LD+  NG ++A+GEV+    ++
Sbjct: 13  DVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQDGRF 72

Query: 119 GVRITDII 126
            +RI +++
Sbjct: 73  ALRIVELV 80


>UniRef50_A6Q2N5 Flagellar motor switch protein FliN/FliY n=1 Tax=Nitratiruptor sp.
           SB155-2 RepID=A6Q2N5_NITSB
          Length = 83

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
           G   D  L+ DI +K++V LG T+  I E+L L +G V+ L+    + +D+++N   +A 
Sbjct: 6   GEQVDFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAI 65

Query: 109 GEVVVVADKYGVRITDI 125
           GE+VV+ DKYGVRI D+
Sbjct: 66  GEIVVINDKYGVRIVDL 82


>UniRef50_B1K3A4 Flagellar motor switch protein FliN n=1 Tax=Burkholderia
           cenocepacia MC0-3 RepID=B1K3A4_BURCC
          Length = 113

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IPV+LT+E+G   + + +LL    GS V L+ LAGEPL I +NG  +  GEVVV  + YG
Sbjct: 40  IPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGTPVGLGEVVVSGEHYG 99

Query: 120 VRITDI 125
           +RI ++
Sbjct: 100 LRIIEL 105


>UniRef50_Q01PQ3 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01PQ3_SOLUE
          Length = 82

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           D+PV + VEL R  MT +++L+L +G V+     AGE +DI I G L   GE+VV+ +  
Sbjct: 12  DVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIENTL 71

Query: 119 GVRITDI 125
           GVRITD 
Sbjct: 72  GVRITDF 78


>UniRef50_A7H064 Flagellar motor switch protein FliN n=8 Tax=Epsilonproteobacteria
           RepID=A7H064_CAMC5
          Length = 105

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
           G  +  D +MDI V    ELG T ++I ELL+   GSV+ L+  AGE +++ IN  +  +
Sbjct: 14  GLFKSYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGK 73

Query: 109 GEVVVVADKYGVRITDIITPSERMRRLSR 137
           GEV+V      +RI +I+     ++   +
Sbjct: 74  GEVMVYEKNLAIRINEILDSKSVIQYFKK 102


>UniRef50_A4J755 Surface presentation of antigens (SPOA) protein n=1
           Tax=Desulfotomaculum reducens MI-1 RepID=A4J755_DESRM
          Length = 128

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I D+ V ++ ELG   +  +E+L L  G+V+ ++  AG+ +++ IN    AQGE+++V D
Sbjct: 49  IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVND 108

Query: 117 KYGVRITDIITPSERMRRLS 136
           K+ VRI  I +P +++RR S
Sbjct: 109 KFAVRINSITSP-KKLRRES 127


>UniRef50_A3ZT50 Probable flagellar motor switch protein fliN n=1
           Tax=Blastopirellula marina DSM 3645 RepID=A3ZT50_9PLAN
          Length = 309

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 47/76 (61%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++ I +++ V L   +M ++E+  L  GS++  D    E +D+ +  + IAQGE V + D
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283

Query: 117 KYGVRITDIITPSERM 132
           K+G+R+T+++ P ER 
Sbjct: 284 KFGMRVTNVLLPEERF 299


>UniRef50_D1R7U0 Putative type III secretion system protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R7U0_9CHLA
          Length = 462

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 49/69 (71%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I DIP+ +T E+GR +MT+K+L+ L  G+++ L+    + +D+++NG  +A+GE++ + D
Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452

Query: 117 KYGVRITDI 125
             GVR+ +I
Sbjct: 453 ALGVRVLEI 461


>UniRef50_C7DF35 Flagellar motor switch protein FliN n=1 Tax=Thalassiobium sp. R2A62
           RepID=C7DF35_9RHOB
          Length = 94

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-- 116
           D+P+++T+ +GRT  T++ELL L + +++ LD    +P+DI +   LIA+GE+  + D  
Sbjct: 15  DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDTN 74

Query: 117 --KYGVRITDIITPSERMRR 134
             +  VR+T+II P    R+
Sbjct: 75  ISQLAVRLTEIIDPPSGSRK 94


>UniRef50_C1SLE0 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SLE0_9BACT
          Length = 95

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 44/61 (72%)

Query: 66  VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           VELGR  + ++ELL   +G+++     +GEP+D L+NG  +A GE++V+ +++ VRIT+I
Sbjct: 20  VELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDERFAVRITEI 79

Query: 126 I 126
           +
Sbjct: 80  L 80


>UniRef50_C1F999 Putative flagellar motor switch protein FliN n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F999_ACIC5
          Length = 248

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 23  LSEQKSTSSKSAAETVFQQFG---GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
           LSE+ + + ++AA       G         +  ++DL++DI V  ++  G   + I+ELL
Sbjct: 129 LSEKAAKAPETAARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIRELL 188

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
               G V+ LD    +P+D+++   ++A+GEVV+V   +G+R+T++  P +
Sbjct: 189 ETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVNGNFGLRVTEVAEPKK 239


>UniRef50_D1AZW0 Surface presentation of antigens (SPOA) protein n=3
           Tax=Campylobacteraceae RepID=D1AZW0_SULD5
          Length = 103

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DI V    ELG T +TI+ LL+L +GSV+ L+  AGE +++ IN  +  +GEV+V   
Sbjct: 20  LLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVYEK 79

Query: 117 KYGVRITDII 126
              +RI +I+
Sbjct: 80  NLAIRINEIL 89


>UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein n=15
           Tax=Epsilonproteobacteria RepID=Q30RD7_SULDN
          Length = 111

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 10/115 (8%)

Query: 26  QKSTSSKSAAETVF---QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +K   +  A E +F    +    D SG       ++D+ V+   +LG T +++ E+L+L 
Sbjct: 2   KKRRHTYGAKEEIFDSESELSWMDYSG-------LLDMEVEFISDLGETELSVGEILQLK 54

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +GS++ L   AGE ++  +NG ++ +GEV+V      +RI +++  S  +  LS+
Sbjct: 55  KGSIIDLKKPAGESVETYVNGRILGRGEVMVYEKNLAIRINEVLDSSAVLYHLSK 109


>UniRef50_B1TBB1 Surface presentation of antigens (SPOA) protein n=1
           Tax=Burkholderia ambifaria MEX-5 RepID=B1TBB1_9BURK
          Length = 111

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +DL+ D+ V L V LG   + +KEL+ L  GS+V LD    + +D+ +N   +A+ E+V 
Sbjct: 36  LDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVA 95

Query: 114 VADKYGVRITDII 126
           V D++G+RI +I+
Sbjct: 96  VDDRFGIRIVEIV 108


>UniRef50_D2LD12 Surface presentation of antigens (SPOA) protein n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LD12_RHOVA
          Length = 120

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 7/96 (7%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
           AA ++     GGD  G+L+ +   + IP+ L V LG   M I ++ +L +G+V+ LD   
Sbjct: 24  AAASLIGLGKGGD-PGSLERV---LRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKV 79

Query: 94  GEPLDILINGYLIAQGEVVVV---ADKYGVRITDII 126
           G+ +D++ING +IA+GE+VV+     ++GV +T++I
Sbjct: 80  GDAVDVMINGRIIAKGEIVVLDEEGSRFGVTLTEMI 115


>UniRef50_O67495 Flagellar motor switch protein fliN n=1 Tax=Aquifex aeolicus
           RepID=FLIN_AQUAE
          Length = 112

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 47/68 (69%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIPV++ V +GR   T+ ELL +  GSV+ +D    + +DI +NG LIA+GE+V++  K 
Sbjct: 41  DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIIDGKI 100

Query: 119 GVRITDII 126
           GV+I +++
Sbjct: 101 GVKIKEVV 108


>UniRef50_Q2SEZ2 Flagellar motor switch protein n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SEZ2_HAHCH
          Length = 111

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 5/102 (4%)

Query: 27  KSTSSKSAAETVF----QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           K T+S +  E V      + G GD   +   +DL+ ++ V L V LG   +T+ EL  LT
Sbjct: 8   KETNSDAIVEEVILEPMNEGGAGDKLKS-DPLDLVKNVKVTLDVYLGDANLTVAELTALT 66

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
             SVV ++    +P+++L++G ++A+G++V V D +G++IT+
Sbjct: 67  SESVVKMNKQLNDPIELLLDGKVVARGKLVAVDDVFGIQITE 108


>UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ/HrcQ n=2
           Tax=Cystobacterineae RepID=Q1D9K8_MYXXD
          Length = 467

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 50/73 (68%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           DL+ D+P+++ VEL R  +T ++++ L  G V+ L+   GEP+++ +NG ++A+GE+V +
Sbjct: 395 DLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVEL 454

Query: 115 ADKYGVRITDIIT 127
             + GVRI  + +
Sbjct: 455 EGQLGVRIITLAS 467


>UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ADD4_CARHZ
          Length = 124

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 46/68 (67%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L+ +I +++   +G T +T+++LL L +G V+ LD   G+ +D+ I+G   A GEVVV+ 
Sbjct: 42  LLNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVIN 101

Query: 116 DKYGVRIT 123
           + YGVRIT
Sbjct: 102 EMYGVRIT 109


>UniRef50_Q6MBC5 Putative flagellar motor switch protein (= type III secretion
           translocase SctQ) n=1 Tax=Candidatus Protochlamydia
           amoebophila UWE25 RepID=Q6MBC5_PARUW
          Length = 445

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 67/115 (58%), Gaps = 9/115 (7%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSA-AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
           N  +D++  E  S  K+ +S+S+ A ++ +    G ++           IPV LTVE+GR
Sbjct: 337 NFTLDEVTEEEQSSPKNNASQSSPASSITENTKTGLITPN--------QIPVNLTVEVGR 388

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
            +M++  LL+L  G+++ L+    + +D+ ING ++ +GE++ + +  GVR+ ++
Sbjct: 389 IQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVLGVRVLEL 443


>UniRef50_C3KNB2 Type III secretion system translocation protein, RhcQ n=1
           Tax=Rhizobium sp. NGR234 RepID=C3KNB2_RHISN
          Length = 351

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 46/75 (61%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           +++ + D+P++L  E+GR    +KE+ R+ +G+V+        P+ IL NG L+ +GE++
Sbjct: 275 ELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSILANGRLVGKGELI 334

Query: 113 VVADKYGVRITDIIT 127
            + +  G+R+  + T
Sbjct: 335 RIGEGLGIRVVRLST 349


>UniRef50_Q0C5L8 Putative flagellar motor switch protein FliN n=1 Tax=Hyphomonas
           neptunium ATCC 15444 RepID=Q0C5L8_HYPNA
          Length = 99

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I  +PV +TV +G+ R++++E+L L   SV+AL     +P+D+ I+  LIA+GE+V   D
Sbjct: 22  IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGELVETDD 81

Query: 117 -KYGVRITDII 126
            +  V+I +II
Sbjct: 82  GQIAVKIVEII 92


>UniRef50_Q0ANV1 Surface presentation of antigens (SPOA) protein n=3
           Tax=Alphaproteobacteria RepID=Q0ANV1_MARMM
          Length = 99

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D+  I  + V+++V LGR++M I++ LR+ +G+V+ LD    + + IL N + IA+G+VV
Sbjct: 17  DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVV 76

Query: 113 VVADKYGVRIT 123
           +  D+  V IT
Sbjct: 77  IQGDRIAVSIT 87


>UniRef50_UPI0001AF390C type III secretion component, putative n=2 Tax=Pseudomonas syringae
           group RepID=UPI0001AF390C
          Length = 353

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 42/64 (65%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           D+P+ L  +LG   +T+ +L  +  GS++ L GLA + +D+++NG  + +GE+V + D  
Sbjct: 284 DLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAHDEVDLMVNGRRVGRGELVTIGDGL 343

Query: 119 GVRI 122
           GVR+
Sbjct: 344 GVRL 347


>UniRef50_Q2RPI0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RPI0_RHORT
          Length = 93

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 49/71 (69%), Gaps = 1/71 (1%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV-A 115
           +  +PV+++V LG+  + + +LL+L +G+VV L+    EP++I  N  L+A+GEV++   
Sbjct: 15  VYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDG 74

Query: 116 DKYGVRITDII 126
           DK GV +T+++
Sbjct: 75  DKIGVTLTELV 85


>UniRef50_Q1CTU2 Flagellar switch protein n=20 Tax=Helicobacteraceae
           RepID=Q1CTU2_HELPH
          Length = 123

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 45/70 (64%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++D+ +  + ELG T++ + ++LR  +GSV+ L   AGE +D  +NG +I +GEV+V   
Sbjct: 41  LLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFER 100

Query: 117 KYGVRITDII 126
              +R+ +I+
Sbjct: 101 NLAIRLNEIL 110


>UniRef50_A9DR59 Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex
           HEL-45 RepID=A9DR59_9RHOB
          Length = 154

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           I+ ++++ + + + LG+ RM I  LL LT+GS+V L+   G P+D++++  L+A+G++V 
Sbjct: 75  INAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVK 134

Query: 114 VA-DKYGVRITDII 126
           V  D+ GV +T I+
Sbjct: 135 VGEDRLGVSLTQIV 148


>UniRef50_C0QPA3 Flagellar motor switch phosphatase FliY n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QPA3_PERMH
          Length = 79

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 45/74 (60%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
            DI  + D+ VK+T E+GR +    E++ L +G ++ LD    + +++ +   L A GE+
Sbjct: 5   HDISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGEL 64

Query: 112 VVVADKYGVRITDI 125
           +V  +KYG+R+ D+
Sbjct: 65  IVANEKYGIRVVDL 78


>UniRef50_B1LY10 Surface presentation of antigens (SPOA) protein n=9
           Tax=Alphaproteobacteria RepID=B1LY10_METRJ
          Length = 122

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V LTV LGR RM +  LLR+ +G+V+ L+    + ++IL N + IA+G++VV  D+  V 
Sbjct: 30  VDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGDRISVE 89

Query: 122 ITDII 126
           +T++I
Sbjct: 90  VTELI 94


>UniRef50_Q1IR63 Flagellar motor switch FliN n=1 Tax=Candidatus Koribacter
           versatilis Ellin345 RepID=Q1IR63_ACIBL
          Length = 252

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           T+  G+  M ++++L L  GSVV LD    +P+++L++G +IA+G VVVV   YG+R+ +
Sbjct: 186 TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVDGNYGLRVAE 245

Query: 125 I 125
           +
Sbjct: 246 V 246


>UniRef50_C6N6Z9 Putative surface presentation of antigens (SPOA) protein n=1
           Tax=Legionella drancourtii LLAP12 RepID=C6N6Z9_9GAMM
          Length = 101

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 45/72 (62%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L+ DI V+ TV +G   +TI EL  L  G  + L+    EP++I++N  +IA+GE++   
Sbjct: 30  LVGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHE 89

Query: 116 DKYGVRITDIIT 127
           D + V+IT+I +
Sbjct: 90  DHFAVQITEIYS 101


>UniRef50_A8EW59 Flagellar motor switch protein FliN n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW59_ARCB4
          Length = 95

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 48/81 (59%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           DL++D  + + V LG T +++ E L+LT+G +++L   AG   +I +N  +I  G+++V+
Sbjct: 9   DLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTGDIIVI 68

Query: 115 ADKYGVRITDIITPSERMRRL 135
            +K  VR+ D +     +R  
Sbjct: 69  DEKLAVRVQDAMDSDNVVRYF 89


>UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Tax=Conexibacter woesei DSM
           14684 RepID=UPI0001C312B8
          Length = 301

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
           G GDV   +   D + DI V++  ELGRTR+ + +   +  GSV+ LD  A +P+D+ +N
Sbjct: 199 GEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVN 258

Query: 103 GYLIAQGEVVVVAD-KYGVRITDI 125
           G   A G +V+  D ++ +R+ ++
Sbjct: 259 GLRFASGTLVLTDDGEWALRLAEV 282


>UniRef50_C1ZEH8 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEH8_PLALI
          Length = 396

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V+L+V L   RM +  LL+L+ G++V       + LDI I     AQGE V + + +GV+
Sbjct: 320 VQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGEHFGVK 379

Query: 122 ITDIITPSERMRRL 135
           +  +  P E+   L
Sbjct: 380 VNRLGPPPEKPSSL 393


>UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clostridia
           RepID=B0K1R9_THEPX
          Length = 332

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           + LT +LG T +T+KE L    G ++ LD    EP+DI+I+  +  +G   +  +KY VR
Sbjct: 260 IPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVR 319

Query: 122 ITDII 126
           IT++I
Sbjct: 320 ITEVI 324


>UniRef50_A0NWB8 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae
           RepID=A0NWB8_9RHOB
          Length = 88

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 45/68 (66%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           +I V ++V LG   M + +LLR+ +G+V+ LD    E + I  N  L+A+G+VV++ ++ 
Sbjct: 6   EIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGERI 65

Query: 119 GVRITDII 126
           G+ IT+++
Sbjct: 66  GISITEVL 73


>UniRef50_C5CYF0 Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CYF0_VARPS
          Length = 151

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 44  GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
           GGD S  L+D + +  I  +L V +G   +++ ELL   +  V+ LD     P+D+ I G
Sbjct: 61  GGDAS-ILKDWNPLHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEG 119

Query: 104 YLIAQGEVVVVADKYGVRITDI 125
            ++A+G++V V   + VRIT++
Sbjct: 120 KVVARGQLVAVDGHFAVRITEL 141


>UniRef50_D2R2R8 Surface presentation of antigens (SPOA) protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2R8_9PLAN
          Length = 329

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           L +++PV++T  L  T++ +K ++ L  GS++  +      L + +  + +A GE V V 
Sbjct: 241 LRIEVPVRVT--LATTQLPLKRIVELGPGSIIQFEKPCDSELSLQVGEHEVAIGEAVKVG 298

Query: 116 DKYGVRITDIITPSERM 132
           +K+G+R+T ++ P ER 
Sbjct: 299 EKFGLRLTSMVMPPERF 315


>UniRef50_A4U4R5 Surface presentation of antigens (SPOA) protein n=1
           Tax=Magnetospirillum gryphiswaldense RepID=A4U4R5_9PROT
          Length = 90

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           + V+    LG   + I +LL+L +G+VV LD    +P+D+ +N   IA+ EVVVV D   
Sbjct: 19  VNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVVEDHLA 78

Query: 120 VRITDII 126
           V +T+++
Sbjct: 79  VTVTEVL 85


>UniRef50_Q7UIS4 Probable flagellar motor switch protein fliN [Fragment] n=1
           Tax=Rhodopirellula baltica RepID=Q7UIS4_RHOBA
          Length = 144

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTV 66
           P D     +    +E  +E K T       ++++              + ++ I   + V
Sbjct: 34  PVDKRCVRIQGRMSENATEDKPTEPSPPTSSMYK--------------EKVLKIRTTVNV 79

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
            L   +  ++++L L  GS++  D     PL +   G+ IA GE V + DK+G+R+ +I 
Sbjct: 80  TLAEKKEPLRKILALVPGSMLTFDVHCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIG 139

Query: 127 TPSE 130
            P E
Sbjct: 140 VPKE 143


>UniRef50_C3XFR2 Flagellar motor switch protein FliN n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XFR2_9HELI
          Length = 128

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 49/81 (60%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++D+ V  + +LG T++ + E+L+  +GS++ L   AG  ++I +N  ++ +GEV+V   
Sbjct: 41  LLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVYER 100

Query: 117 KYGVRITDIITPSERMRRLSR 137
              +RI +I+  +  +  ++R
Sbjct: 101 NLAIRINEILDSNAIVYYIAR 121


>UniRef50_B6IT07 Flagellar motor switch protein FliN n=2 Tax=Rhodospirillum centenum
           RepID=B6IT07_RHOCS
          Length = 103

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 46/70 (65%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           L +I  I D  V+++V LG + + +++LL+L +G++V LD    +  DI+++G ++ +GE
Sbjct: 24  LPEISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDRKIDDLSDIIVSGRMVGRGE 83

Query: 111 VVVVADKYGV 120
           V +V DK  V
Sbjct: 84  VTIVEDKIAV 93


>UniRef50_Q48IQ1 Type III secretion component, putative n=1 Tax=Pseudomonas syringae
           pv. phaseolicola 1448A RepID=Q48IQ1_PSE14
          Length = 301

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 53  DIDLIMD-IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           D+D  +D +P+ L  +LG   +T+ +L  +  GS++ L G   + +D+++NG  I +GE+
Sbjct: 225 DLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGEL 284

Query: 112 VVVADKYGVRI 122
           V + D  GVR+
Sbjct: 285 VSIGDGLGVRL 295


>UniRef50_A6CBY5 Probable flagellar motor switch protein fliN n=1 Tax=Planctomyces
           maris DSM 8797 RepID=A6CBY5_9PLAN
          Length = 295

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 45/93 (48%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           S  S  +   Q       +     ++ I  +PV+  V+L   ++ + +LL +  GS++  
Sbjct: 187 SPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKLASKKIEMNQLLSICPGSLITF 246

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
           D    +PL++ IN  +   GE V + + +G++I
Sbjct: 247 DKPCEDPLELYINNQVYCLGEAVKIGEHFGLKI 279


>UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria RepID=B8DI82_LISMH
          Length = 515

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 1   MSDMNNPADDNNGA--MDDLWAEALSEQKSTSS------KSAAETVFQQFGGGDVSGTLQ 52
           M  + NPA     A  M  + A+ ++E+++T+       +  AE V Q     +   TL 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQ--AVIEEKETLS 439

Query: 53  DIDLIM-DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++ I+ DIPV L V  G  ++ +++ +   +  V+ L     EPL + +NG  I +G +
Sbjct: 440 EMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGIL 499

Query: 112 VVVADKYGVRITDII 126
           V V D +G+++T+++
Sbjct: 500 VRVDDHFGIQMTELV 514


>UniRef50_D2TZ40 Type III secretion apparatus protein YscQ,HrcQ,SpaO n=1
           Tax=Arsenophonus nasoniae RepID=D2TZ40_9ENTR
          Length = 292

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIP+ L   L + ++ + EL  + QG V+  D  A   + I+ NG LIA+G ++ + D+ 
Sbjct: 221 DIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDRL 280

Query: 119 GVRITDII 126
           GV IT + 
Sbjct: 281 GVEITHLF 288


>UniRef50_B4R925 FliN family protein n=8 Tax=Alphaproteobacteria RepID=B4R925_PHEZH
          Length = 108

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V++ V LGR  + +++LLR+ +G+V+ LD    E + IL N + +A+GE+ +  DK  + 
Sbjct: 34  VEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVARGEIQISDDKIAIA 93

Query: 122 IT 123
           +T
Sbjct: 94  VT 95


>UniRef50_A8LMS4 Flagellar motor switch protein FliN n=5 Tax=Rhodobacteraceae
           RepID=A8LMS4_DINSH
          Length = 89

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY- 118
           +P+ L+V +G+   T++ELL L + +V+ LD    +P+++ +  +LIA+G +   AD + 
Sbjct: 15  VPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARGVLEEDADSHR 74

Query: 119 -GVRITDIITP 128
             VR+T++I+P
Sbjct: 75  LSVRLTEVISP 85


>UniRef50_UPI00016C4201 hypothetical protein GobsU_09164 n=1 Tax=Gemmata obscuriglobus UQM
           2246 RepID=UPI00016C4201
          Length = 117

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 50/82 (60%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           +G    ++ + D+P+ +T  LGR  + I E+L L  GSVV L+ +   P+++ + G   A
Sbjct: 30  TGPGSTLESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFA 89

Query: 108 QGEVVVVADKYGVRITDIITPS 129
            GEVVVV + + VRI +++ P+
Sbjct: 90  VGEVVVVGEHFAVRIKNLLPPT 111


>UniRef50_Q1IR54 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IR54_ACIBL
          Length = 109

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 29  TSSKSAAE---TVFQQFGGGDVSGTLQD--IDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
           T S+   E   TV Q   G   S  ++   ++    +   +T+EL   R T++++L L  
Sbjct: 7   THSRCGTEGWWTVIQNESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRP 66

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           G+VV         L + +NG L+A  E  VV ++YGVR+T++
Sbjct: 67  GAVVDTCWSQATDLPLRVNGALLAWSEFEVVDNRYGVRLTEL 108


>UniRef50_Q18CW8 Flagellar motor switch protein n=5 Tax=Clostridium difficile
           RepID=Q18CW8_CLOD6
          Length = 104

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 33  SAAETVFQ-QFGG--GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           S  E +++  FG    + +G +++   + +  V + V +G    TIK +L L +GS++ L
Sbjct: 3   SKKEDIYELNFGQLIEEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKL 62

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           +    E LDI  N  L A GE ++  +   VR++ I
Sbjct: 63  NKNVDEKLDIYANDRLFAYGESIITNETLSVRLSKI 98


>UniRef50_A0RC99 Flagellar motor switch protein N n=71 Tax=Bacillus cereus group
           RepID=A0RC99_BACAH
          Length = 119

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 49/87 (56%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
            + F G     +   ID + DI ++L V+LG+  +T+ ++  L  G V+ ++   G  +D
Sbjct: 13  LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVD 72

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDI 125
           + ++   +  GE +V+ +K+G+ I++I
Sbjct: 73  VYLSNMKVGIGEAIVMDEKFGIIISEI 99


>UniRef50_A7K019 Type III secretion inner membrane protein YscQ n=13
           Tax=Vibrionaceae RepID=A7K019_VIBSE
          Length = 322

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 41/67 (61%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +PV+LT ++G   +T+++L +L  G V  L+    +P+ +  NG +I + E+V V +  G
Sbjct: 249 LPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEHLG 308

Query: 120 VRITDII 126
           VR+ ++ 
Sbjct: 309 VRVLELF 315


>UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii
           H 168 RepID=B8CYQ6_HALOH
          Length = 334

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 40  QQFGGGDVSGTLQDIDLIMD----IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGE 95
           Q F       T Q I+ I       P+++  E+G+T++T+ +LL L  G V+ LD  A E
Sbjct: 233 QWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEE 292

Query: 96  PLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
            +DI I   +  QG   V      V+ITD+I+
Sbjct: 293 KVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324


>UniRef50_A7HWV0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWV0_PARL1
          Length = 78

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 45/72 (62%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           ++ V+L+V LG++ M I +LL++ +G+V+ L     E + +L N   IA+GE++V  ++ 
Sbjct: 6   NVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGERV 65

Query: 119 GVRITDIITPSE 130
            V IT ++   E
Sbjct: 66  AVSITTVLAGGE 77


>UniRef50_Q2SH51 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH51_HAHCH
          Length = 397

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           + D+PV++  E+ R   T+ ++  L  G  +ALD      + +L+    IA+ E+V V D
Sbjct: 300 LHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGD 359

Query: 117 KYGVRITDIITP 128
           + G RIT +  P
Sbjct: 360 QIGARITRLSLP 371


>UniRef50_B1I5G4 CheC, inhibitor of MCP methylation n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I5G4_DESAP
          Length = 369

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 35/47 (74%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           G G     L+ +DLI+D+P+K+TV LGR++  IK++L LT GS++++
Sbjct: 290 GAGFSELALEKLDLILDLPLKVTVILGRSKRPIKDVLGLTPGSIISV 336


>UniRef50_B6WRL8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
           29098 RepID=B6WRL8_9DELT
          Length = 398

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDL-IMDI 60
            DM +P  +         AE  SE   +  + A   V Q  G    S T++   +  +++
Sbjct: 263 PDMGDPGREP--------AEKGSEDGMSEERLAPTGVVQSDGAAAESATVEPASVGALEL 314

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL-DILINGYLIAQGEVVVVADKYG 119
           PV    E+GR  + + EL  L  G  +AL G    P+ DI + G L+AQG +V V    G
Sbjct: 315 PV--VFEIGRLHLRLDELAALVPGHTLALGGETPSPVVDIRVAGQLLAQGRLVDVGGIPG 372

Query: 120 VRIT 123
           V+IT
Sbjct: 373 VQIT 376


>UniRef50_A9APA9 Type III secretion system apparatus protein YscQ/HrcQ n=17
           Tax=Burkholderia RepID=A9APA9_BURM1
          Length = 443

 Score = 44.7 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALD-GLAGEPLDILINGYLIAQGEVVVVADKY 118
           + V L  EL  T M + EL  L  G+V+ L  G+    + ++ NG LI  G ++ V  K 
Sbjct: 369 LAVDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKL 428

Query: 119 GVRITDIITPSERMR 133
           GVR+  +  P+ R R
Sbjct: 429 GVRVVTLTQPAPRER 443


>UniRef50_Q11M61 Surface presentation of antigens (SPOA) protein n=1
           Tax=Chelativorans sp. BNC1 RepID=Q11M61_MESSB
          Length = 354

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           + +FG G +       D I D+PV+L       R+T++EL  L  G+ + L+     P+ 
Sbjct: 259 WSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVT 318

Query: 99  ILINGYLIAQGEVVVVADKYGVRITD 124
           IL NG    +G +V + D  GV+++ 
Sbjct: 319 ILANGAPAGRGYLVQIGDHMGVQLSH 344


>UniRef50_Q2NR65 Type III secretion apparatus SpaO n=2 Tax=Sodalis glossinidius
           RepID=Q2NR65_SODGM
          Length = 338

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 33  SAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92
           +AA T   +   GD +      D + ++P+ L   L R  +++ E+ +  QG V+ LD  
Sbjct: 242 AAAPTPTGRLALGDDTAA----DPLANLPLTLEFILQRRYLSLGEIQQFRQGKVLELDPE 297

Query: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
             + ++I  NG+L+A GE+V + D+ GV + ++
Sbjct: 298 GEKHIEIRANGHLLALGELVQLEDRLGVELMEL 330


>UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Bacillales
           RepID=A7GNF7_BACCN
          Length = 554

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D  ++ ++ + +    G T  TI+++L L +   V LD    EP+ I +N  L+A GE+V
Sbjct: 481 DTSILQNVEMNVRFVFGSTVRTIEDILSLHENDAVVLDEEVDEPIRIYVNNVLVAYGELV 540

Query: 113 VVADKYGVRIT 123
            V   +GV++T
Sbjct: 541 NVDGFFGVKVT 551


>UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desulfotomaculum
           RepID=A4J3G9_DESRM
          Length = 333

 Score = 43.9 bits (102), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
           ++T  K++ ETV Q F        L ++   + IPV L   LG+ R T  +L +L +G  
Sbjct: 230 ENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLGKIRCTAGDLAKLKKGDT 289

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +A+   + + + +L+ G  +A GE+   A++  ++I+
Sbjct: 290 LAIP-FSSQQIKLLVGGIPVALGELQTHAEETKIKIS 325


>UniRef50_C4PNI3 Type III secretion component, basal body n=13 Tax=Chlamydiaceae
           RepID=C4PNI3_CHLTZ
          Length = 373

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP---LDILINGYLIAQGEVVVVADKYG 119
           K+  E+ R  +++ E L+L  GSV+  DG+   P   +DI++NG  + +G ++ + D  G
Sbjct: 310 KIVAEVARYSLSVGEFLKLGPGSVLQFDGV--HPTLGVDIILNGAKVGRGNIIALQDVLG 367

Query: 120 VRITDI 125
           +R+ ++
Sbjct: 368 IRVLEV 373


>UniRef50_P74860 Secretion system apparatus protein ssaQ n=37 Tax=Salmonella
           enterica RepID=SSAQ_SALTY
          Length = 322

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
            IP ++  E+GR  + I +L +L  G V+ + G     + I +N  +I QGE++   +++
Sbjct: 249 QIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEF 308

Query: 119 GVRIT 123
            VRIT
Sbjct: 309 MVRIT 313


>UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A358_NATTJ
          Length = 333

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +PVK   EL RTR+++KE L L +G V++L+      +D+++      +G+   + +K  
Sbjct: 260 VPVK--AELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNKLA 317

Query: 120 VRITDII 126
           V+IT I+
Sbjct: 318 VQITQIV 324


>UniRef50_A3VS57 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis
           HTCC2503 RepID=A3VS57_9PROT
          Length = 90

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 40/65 (61%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           S   Q+   + DI + ++V +GR +M++KEL      +VV L   A EP++++++G +IA
Sbjct: 4   SAKAQNKQPLYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIA 63

Query: 108 QGEVV 112
            GE+ 
Sbjct: 64  TGELC 68


>UniRef50_UPI0001744A0D type III secretion system protein n=1 Tax=Verrucomicrobium spinosum
           DSM 4136 RepID=UPI0001744A0D
          Length = 342

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 40  QQFGGGDVSGT---LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           QQF   D + T    + + L+  + V+LT  +G    T+++L  L  G+ + L   A + 
Sbjct: 251 QQFIMSDPAPTPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAPGACIELPTPASQA 310

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDI 125
           + I  NG  I +GE++ + ++ GVRIT++
Sbjct: 311 VTICANGRAIGKGELLDIGNRIGVRITEL 339


>UniRef50_B1FB78 Type III secretion system apparatus protein YscQ/HrcQ n=1
           Tax=Burkholderia ambifaria IOP40-10 RepID=B1FB78_9BURK
          Length = 309

 Score = 42.7 bits (99), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +PVKL     +  +T+ ++ RL  G+V+ LD  A   + I  NG  +A GE++ V ++  
Sbjct: 238 LPVKLEFAFRQRELTVADVARLHPGAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLA 297

Query: 120 VRITDI 125
           V I  I
Sbjct: 298 VEIQSI 303


>UniRef50_B2V6Q2 Surface presentation of antigens (SPOA) protein n=2
           Tax=Sulfurihydrogenibium RepID=B2V6Q2_SULSY
          Length = 87

 Score = 42.0 bits (97), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           +V    + I LI +I + + +EL   +   + LL L +G ++ L+    + ++I      
Sbjct: 6   EVDEIYKKISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEK 65

Query: 106 IAQGEVVVVADKYGVRITDII 126
           +  GE+V V +KYGVR+ D+I
Sbjct: 66  VGFGELVNVNEKYGVRLVDLI 86


>UniRef50_Q3SBB5 EpaO n=13 Tax=Escherichia RepID=Q3SBB5_ECOLX
          Length = 315

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           Q I+   D+PVK+   LG+  M + E   L    +++L   + + ++I +NG L   GE+
Sbjct: 234 QMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIEIRVNGALTGYGEL 293

Query: 112 VVVADKYGVRITDIIT 127
           V V DK GV I   ++
Sbjct: 294 VEVDDKLGVEIHSWLS 309


>UniRef50_A0AGF3 Complete genome n=15 Tax=Listeria RepID=A0AGF3_LISW6
          Length = 78

 Score = 41.6 bits (96), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           +IP+++  ELGRT+  +  LL + +G+V  L+      + I I+G  I  GE++    K 
Sbjct: 6   NIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGKM 65

Query: 119 GVRITDI 125
            V+IT +
Sbjct: 66  FVKITKL 72


>UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67K08_SYMTH
          Length = 308

 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           + + P+ +   LG+TRM + E L L  G V+ LD   G  L + +   L  Q +  VV +
Sbjct: 238 VQEAPLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNKLAFQAKPGVVGE 297

Query: 117 KYGVRITDIIT 127
           +  V+IT  +T
Sbjct: 298 RMAVQITRRVT 308


>UniRef50_D0FW27 Hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcQ protein n=4 Tax=Erwinia RepID=D0FW27_ERWPY
          Length = 341

 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           +  +P+ L V  GRT +T+ EL RL  GSVV LD +      +     LIA+GE+V V
Sbjct: 264 LASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDV 321


>UniRef50_C1DW32 Flagellar motor switch protein FliN/FliY n=1
           Tax=Sulfurihydrogenibium azorense Az-Fu1
           RepID=C1DW32_SULAA
          Length = 83

 Score = 41.2 bits (95), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 44/77 (57%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
           T++D+ L+ D+ V++ VEL       + LL + +G ++ L+    + L + +     A G
Sbjct: 3   TIEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIG 62

Query: 110 EVVVVADKYGVRITDII 126
           E+  + +KYG+RI D+I
Sbjct: 63  EMTNINEKYGIRIVDLI 79


>UniRef50_Q02KI5 Translocation protein in type III secretion n=5 Tax=Pseudomonas
           aeruginosa RepID=Q02KI5_PSEAB
          Length = 309

 Score = 40.8 bits (94), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD-GLAGEPLDILINGYLIAQGE 110
           +D+  +  +P+ ++ E+GR  + +  L  L  GS++ LD  L GE + IL N   +  GE
Sbjct: 230 EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGE-VRILANQRCLGIGE 288

Query: 111 VVVVADKYGVRITDII 126
           +V + D+ GVR+T + 
Sbjct: 289 LVRLQDRLGVRVTRLF 304


>UniRef50_B3Q297 Type III secretion system translocation protein n=6
           Tax=Rhizobium/Agrobacterium group RepID=B3Q297_RHIE6
          Length = 339

 Score = 40.8 bits (94), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IP+KL  + GR  + ++ L  + +G V  LD    + +DI+  G +I +GE++ V     
Sbjct: 272 IPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLSA 331

Query: 120 VRITDI 125
           VR+T +
Sbjct: 332 VRVTAL 337


>UniRef50_Q2RZE2 Flagellar motor switch protein FliM n=2 Tax=Rhodothermaceae
           RepID=Q2RZE2_SALRD
          Length = 372

 Score = 40.8 bits (94), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
           V L+ ELGRT + + EL +L +G V+ LD    +P+ + +NG
Sbjct: 266 VNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPIKVFVNG 307


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Pro...   199   2e-50
UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=En...   191   7e-48
UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicute...   145   4e-34
UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n...   144   6e-34
UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion...   144   9e-34
UniRef50_Q47I10 Type III secretion system outer membrane O prote...   144   1e-33
UniRef50_Q2LT02 Flagellar motor switch protein n=2 Tax=Deltaprot...   143   1e-33
UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=...   142   4e-33
UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Ther...   142   4e-33
UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion...   139   2e-32
UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema...   138   5e-32
UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion...   138   5e-32
UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion...   138   5e-32
UniRef50_Q31FQ0 Flagellar motor switch protein FliN n=5 Tax=Gamm...   138   6e-32
UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmi...   137   9e-32
UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brev...   136   1e-31
UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Pro...   136   3e-31
UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Therm...   136   3e-31
UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion...   134   6e-31
UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Pro...   134   7e-31
UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion...   134   8e-31
UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathwa...   134   8e-31
UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Pro...   134   9e-31
UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Deth...   134   1e-30
UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clost...   133   1e-30
UniRef50_Q2NX05 Flagellar motor switch protein FliN n=5 Tax=Ente...   132   3e-30
UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halot...   132   3e-30
UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Ther...   132   4e-30
UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion...   132   4e-30
UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion...   131   5e-30
UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Spha...   131   9e-30
UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=...   131   9e-30
UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pp...   131   9e-30
UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desul...   131   1e-29
UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspi...   130   1e-29
UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria ...   130   1e-29
UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobaci...   129   2e-29
UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=...   129   2e-29
UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Therm...   129   2e-29
UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Delt...   129   2e-29
UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Pro...   129   2e-29
UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms Rep...   129   3e-29
UniRef50_B5YIZ3 Flagellar motor switch protein FliN n=1 Tax=Ther...   128   4e-29
UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clos...   128   7e-29
UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion...   128   7e-29
UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridiu...   127   8e-29
UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacte...   127   9e-29
UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jone...   127   9e-29
UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kine...   127   9e-29
UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathwa...   126   2e-28
UniRef50_B8FK37 Flagellar motor switch protein FliN n=3 Tax=Bact...   126   2e-28
UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clos...   126   2e-28
UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion...   126   3e-28
UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridi...   125   5e-28
UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein ...   124   9e-28
UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion...   124   9e-28
UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax...   123   1e-27
UniRef50_Q0AA08 Flagellar motor switch protein FliN n=49 Tax=cel...   123   2e-27
UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotro...   123   2e-27
UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerot...   122   4e-27
UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion...   121   8e-27
UniRef50_Q6AJS8 Probable flagellar motor switch protein (FliN) n...   120   1e-26
UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moore...   120   1e-26
UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobac...   120   1e-26
UniRef50_Q1NP93 Surface presentation of antigens (SPOA) protein ...   119   3e-26
UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pp...   119   3e-26
UniRef50_Q8D3E9 FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8...   118   6e-26
UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lact...   118   6e-26
UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydo...   117   1e-25
UniRef50_B2V6S4 Flagellar motor switch protein FliN n=3 Tax=Sulf...   116   2e-25
UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Noca...   116   2e-25
UniRef50_B4U6V5 Flagellar motor switch protein FliN n=1 Tax=Hydr...   116   3e-25
UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Deni...   115   5e-25
UniRef50_D2R538 Flagellar motor switch protein FliN n=2 Tax=Plan...   114   9e-25
UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobi...   113   1e-24
UniRef50_A8RWA3 Putative uncharacterized protein n=3 Tax=Clostri...   113   1e-24
UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Plan...   113   2e-24
UniRef50_A8RWD0 Putative uncharacterized protein n=3 Tax=Clostri...   113   2e-24
UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitr...   113   3e-24
UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sang...   113   3e-24
UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acid...   113   3e-24
UniRef50_C0GJF1 Flagellar motor switch protein FliN n=1 Tax=Deth...   112   3e-24
UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Cand...   112   3e-24
UniRef50_Q1Q6T3 Strong similar to flagellar motor switch protein...   112   5e-24
UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhod...   111   7e-24
UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding...   111   7e-24
UniRef50_Q7ULU7 Flagellar motor switch protein fliN n=1 Tax=Rhod...   111   8e-24
UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arth...   111   9e-24
UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobi...   111   1e-23
UniRef50_A9HHD1 Flagellar motor switch protein FliN n=2 Tax=Rhod...   111   1e-23
UniRef50_A4A5Y8 Flagellar motor switch protein fliN n=3 Tax=uncl...   111   1e-23
UniRef50_Q2RZE3 Possible flagellar motor switch FliN n=1 Tax=Sal...   111   1e-23
UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacte...   111   1e-23
UniRef50_Q4JMS2 Predicted flagellar motor switch protein n=3 Tax...   109   2e-23
UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Heli...   109   2e-23
UniRef50_Q04RL4 Endoflagellar motor switch protein n=6 Tax=Lepto...   109   2e-23
UniRef50_A0LDK9 Flagellar motor switch protein FliN n=1 Tax=Magn...   109   2e-23
UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Acti...   109   3e-23
UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas...   109   3e-23
UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 T...   109   4e-23
UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella the...   108   4e-23
UniRef50_C1F999 Putative flagellar motor switch protein FliN n=1...   108   5e-23
UniRef50_B9KJD9 Flagellar switch protein n=5 Tax=Rhodobacter sph...   108   5e-23
UniRef50_C0QPC5 Flagellar motor switch protein FliN n=2 Tax=Aqui...   108   6e-23
UniRef50_C2KZ02 Possible flagellar motor switch protein FliY n=1...   107   1e-22
UniRef50_D2S982 Flagellar motor switch protein FliN n=1 Tax=Geod...   106   2e-22
UniRef50_Q44903 Flagellar motor switch protein fliN n=21 Tax=Spi...   106   2e-22
UniRef50_A1QZ73 Flagellar motor switch protein FliN n=7 Tax=Spir...   106   2e-22
UniRef50_C0C1N9 Putative uncharacterized protein n=1 Tax=Clostri...   106   2e-22
UniRef50_Q89AZ3 Flagellar motor switch protein fliN n=1 Tax=Buch...   106   2e-22
UniRef50_C7M222 Flagellar motor switch protein FliN n=1 Tax=Acid...   105   4e-22
UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundi...   105   4e-22
UniRef50_Q07SI0 Flagellar motor switch protein FliN n=7 Tax=Alph...   105   5e-22
UniRef50_Q1GNY9 Flagellar motor switch FliN n=2 Tax=Sphingomonad...   105   5e-22
UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campyloba...   104   6e-22
UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Hel...   104   7e-22
UniRef50_C1A552 Flagellar motor switch protein FliN n=1 Tax=Gemm...   104   8e-22
UniRef50_A5V6A7 Flagellar motor switch protein FliN n=4 Tax=Sphi...   104   9e-22
UniRef50_B1I5E1 Surface presentation of antigens (SPOA) protein ...   104   9e-22
UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivir...   104   9e-22
UniRef50_B1LV08 Flagellar motor switch protein FliN n=1 Tax=Meth...   104   9e-22
UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulf...   104   1e-21
UniRef50_Q2WA21 Flagellar motor switch/type III secretory pathwa...   103   2e-21
UniRef50_A1UTV7 Flagellar motor switch protein fliY n=35 Tax=Rhi...   103   2e-21
UniRef50_B9JRN7 Flagellar motor switch protein FliN n=2 Tax=Rhiz...   103   2e-21
UniRef50_B1ZL53 Flagellar motor switch protein FliN n=6 Tax=Rhiz...   103   2e-21
UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibac...   103   2e-21
UniRef50_Q03593 Flagellar motor switch protein fliN n=21 Tax=Alp...   103   3e-21
UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion...   102   3e-21
UniRef50_C6NYG7 Flagellar motor switch protein FliN n=1 Tax=Acid...   102   3e-21
UniRef50_Q0EZ61 Flagellar protein n=1 Tax=Mariprofundus ferrooxy...   101   5e-21
UniRef50_A4SI07 Lateral flagellar motor switch protein, lfiN n=2...   101   7e-21
UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Plan...   101   7e-21
UniRef50_D0I457 Flagellar motor switch protein FliN n=2 Tax=Vibr...   100   1e-20
UniRef50_B6QZA8 Flagellar motor switch protein n=1 Tax=Pseudovib...    99   2e-20
UniRef50_A5FYJ9 Flagellar motor switch protein FliN n=17 Tax=Alp...    99   2e-20
UniRef50_Q57259 Flagellar motor switch protein fliN n=2 Tax=Rhiz...    99   4e-20
UniRef50_B6IW97 Flagellar motor switch protein FliN n=1 Tax=Rhod...    98   7e-20
UniRef50_A5P6I8 Flagellar motor switch protein n=1 Tax=Erythroba...    98   9e-20
UniRef50_B6R821 Flagellar motor switch protein FliN n=2 Tax=Rhod...    98   1e-19
UniRef50_A6F9R7 Flagellar motor switch protein n=1 Tax=Moritella...    97   1e-19
UniRef50_O54245 Flagellar motor switch protein fliN n=15 Tax=Rhi...    97   2e-19
UniRef50_A7K1M2 Flagellar motor switch protein FliN n=17 Tax=Vib...    97   2e-19
UniRef50_B6IQ95 Flagellar motor switch protein FliN n=1 Tax=Rhod...    97   2e-19
UniRef50_Q0G104 Flagellar motor switch FliN protein:Surface pres...    97   2e-19
UniRef50_B8EL08 Flagellar motor switch protein FliN n=2 Tax=Beij...    96   2e-19
UniRef50_A4Y0Q2 Flagellar motor switch protein FliN n=1 Tax=Pseu...    96   2e-19
UniRef50_C8W1G7 Surface presentation of antigens (SPOA) protein ...    96   3e-19
UniRef50_B1ZR34 Flagellar motor switch protein FliN n=3 Tax=Verr...    95   5e-19
UniRef50_A1RF65 Flagellar motor switch protein FliN n=8 Tax=Shew...    95   6e-19
UniRef50_Q11LL6 Flagellar motor switch protein FliN n=3 Tax=Phyl...    95   8e-19
UniRef50_A4THZ3 Flagellar switch protein n=26 Tax=Enterobacteria...    95   8e-19
UniRef50_C0GJH0 Surface presentation of antigens (SPOA) protein ...    95   1e-18
UniRef50_A7H064 Flagellar motor switch protein FliN n=8 Tax=Epsi...    95   1e-18
UniRef50_A1T0L0 Surface presentation of antigens (SPOA) protein ...    94   1e-18
UniRef50_C5JB71 Flagellar motor switch/type III secretory pathwa...    94   1e-18
UniRef50_D1AZW0 Surface presentation of antigens (SPOA) protein ...    94   1e-18
UniRef50_A5D0I4 Flagellar motor switch/type III secretory pathwa...    94   1e-18
UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein ...    93   2e-18
UniRef50_C6XFK8 Putative flagellar motor switch protein n=1 Tax=...    93   2e-18
UniRef50_Q7UIS4 Probable flagellar motor switch protein fliN [Fr...    93   3e-18
UniRef50_C9PEF6 Flagellar motor switch protein FliN n=1 Tax=Vibr...    93   3e-18
UniRef50_Q18D12 Putative flagellar motor switch protein n=3 Tax=...    93   3e-18
UniRef50_A3SFT8 Surface presentation of antigens (SPOA) protein ...    93   3e-18
UniRef50_Q6MBC5 Putative flagellar motor switch protein (= type ...    92   4e-18
UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ...    92   5e-18
UniRef50_A8AKJ4 Putative uncharacterized protein n=1 Tax=Citroba...    92   5e-18
UniRef50_B9Z4S4 Flagellar motor switch protein FliN n=1 Tax=Luti...    92   5e-18
UniRef50_A6CBY5 Probable flagellar motor switch protein fliN n=1...    92   6e-18
UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein ...    91   9e-18
UniRef50_P57183 Flagellar motor switch protein fliN n=3 Tax=Buch...    91   9e-18
UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arco...    91   1e-17
UniRef50_A5KY22 Flagellar motor switch protein n=2 Tax=Vibrional...    91   1e-17
UniRef50_D1R7U0 Putative type III secretion system protein n=1 T...    91   1e-17
UniRef50_Q058C3 Flagellar motor switch protein, C-ring protein n...    91   1e-17
UniRef50_B1K3A4 Flagellar motor switch protein FliN n=1 Tax=Burk...    90   2e-17
UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carb...    90   2e-17
UniRef50_Q1CTU2 Flagellar switch protein n=20 Tax=Helicobacterac...    90   2e-17
UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiob...    89   4e-17
UniRef50_A3ZT50 Probable flagellar motor switch protein fliN n=1...    88   9e-17
UniRef50_Q2CGH8 Flagellar motor switch protein FliN n=3 Tax=Rhod...    88   9e-17
UniRef50_C1ZEH8 Flagellar motor switch/type III secretory pathwa...    88   9e-17
UniRef50_C3XFR2 Flagellar motor switch protein FliN n=1 Tax=Heli...    88   1e-16
UniRef50_D2LD12 Surface presentation of antigens (SPOA) protein ...    88   1e-16
UniRef50_A4U4R5 Surface presentation of antigens (SPOA) protein ...    87   2e-16
UniRef50_A3WGR5 Flagellar motor switch protein n=1 Tax=Erythroba...    87   2e-16
UniRef50_Q1IR54 Surface presentation of antigens (SPOA) protein ...    86   2e-16
UniRef50_O67495 Flagellar motor switch protein fliN n=1 Tax=Aqui...    86   3e-16
UniRef50_A7K019 Type III secretion inner membrane protein YscQ n...    86   4e-16
UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyph...    86   5e-16
UniRef50_A9DR59 Flagellar motor switch protein n=1 Tax=Oceanibul...    85   5e-16
UniRef50_C6N6Z9 Putative surface presentation of antigens (SPOA)...    85   6e-16
UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria...    85   6e-16
UniRef50_Q2NR65 Type III secretion apparatus SpaO n=2 Tax=Sodali...    85   8e-16
UniRef50_Q1IR63 Flagellar motor switch FliN n=1 Tax=Candidatus K...    85   1e-15
UniRef50_Q01PQ3 Surface presentation of antigens (SPOA) protein ...    85   1e-15
UniRef50_Q8KA38 Flagellar motor switch protein fliN n=1 Tax=Buch...    84   1e-15
UniRef50_D2R2R8 Surface presentation of antigens (SPOA) protein ...    84   1e-15
UniRef50_C5CYF0 Surface presentation of antigens (SPOA) protein ...    84   2e-15
UniRef50_A4J755 Surface presentation of antigens (SPOA) protein ...    84   2e-15
UniRef50_Q5DY32 Lateral flagellar export/assembly protein (FliN-...    84   2e-15
UniRef50_C3KNB2 Type III secretion system translocation protein,...    84   2e-15
UniRef50_C7DF35 Flagellar motor switch protein FliN n=1 Tax=Thal...    83   3e-15
UniRef50_C1SLE0 Flagellar motor switch/type III secretory pathwa...    83   3e-15
UniRef50_UPI0001AF390C type III secretion component, putative n=...    83   3e-15
UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Ta...    83   4e-15
UniRef50_A3NFV2 Flagellar motor switch/type III secretory pathwa...    82   6e-15
UniRef50_B1LY10 Surface presentation of antigens (SPOA) protein ...    81   7e-15
UniRef50_B1TBB1 Surface presentation of antigens (SPOA) protein ...    81   8e-15
UniRef50_Q0ANV1 Surface presentation of antigens (SPOA) protein ...    81   9e-15
UniRef50_Q11M61 Surface presentation of antigens (SPOA) protein ...    81   9e-15
UniRef50_A6Q2N5 Flagellar motor switch protein FliN/FliY n=1 Tax...    81   1e-14
UniRef50_A9APA9 Type III secretion system apparatus protein YscQ...    81   1e-14
UniRef50_Q2RPI0 Surface presentation of antigens (SPOA) protein ...    81   1e-14
UniRef50_UPI00016C4201 hypothetical protein GobsU_09164 n=1 Tax=...    81   2e-14
UniRef50_Q2SH51 Flagellar motor switch/type III secretory pathwa...    80   2e-14
UniRef50_C0QPA3 Flagellar motor switch phosphatase FliY n=1 Tax=...    79   3e-14
UniRef50_Q2SEZ2 Flagellar motor switch protein n=1 Tax=Hahella c...    79   5e-14
UniRef50_Q48IQ1 Type III secretion component, putative n=1 Tax=P...    79   5e-14
UniRef50_Q0C5L8 Putative flagellar motor switch protein FliN n=1...    78   6e-14
UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Baci...    78   8e-14
UniRef50_A0NWB8 Putative uncharacterized protein n=3 Tax=Rhodoba...    78   8e-14
UniRef50_B4R925 FliN family protein n=8 Tax=Alphaproteobacteria ...    77   1e-13
UniRef50_D2TZ40 Type III secretion apparatus protein YscQ,HrcQ,S...    77   2e-13
UniRef50_A7HWV0 Surface presentation of antigens (SPOA) protein ...    77   2e-13
UniRef50_A8EW59 Flagellar motor switch protein FliN n=1 Tax=Arco...    77   2e-13
UniRef50_B6WRL8 Putative uncharacterized protein n=1 Tax=Desulfo...    76   3e-13
UniRef50_A0RC99 Flagellar motor switch protein N n=71 Tax=Bacill...    76   4e-13
UniRef50_B6IT07 Flagellar motor switch protein FliN n=2 Tax=Rhod...    76   4e-13
UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halo...    76   5e-13
UniRef50_Q18CW8 Flagellar motor switch protein n=5 Tax=Clostridi...    72   4e-12
UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desul...    72   6e-12
UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clo...    71   1e-11
UniRef50_A8LMS4 Flagellar motor switch protein FliN n=5 Tax=Rhod...    70   2e-11

Sequences not found previously or not previously below threshold:

UniRef50_UPI0001744A0D type III secretion system protein n=1 Tax...    76   3e-13
UniRef50_C0AR55 Putative uncharacterized protein n=1 Tax=Proteus...    76   5e-13
UniRef50_B1FB78 Type III secretion system apparatus protein YscQ...    73   3e-12
UniRef50_Q02KI5 Translocation protein in type III secretion n=5 ...    73   4e-12
UniRef50_Q1GCD9 Flagellar motor switch protein fliN n=20 Tax=Rho...    70   2e-11
UniRef50_P42713 Yop proteins translocation protein Q n=21 Tax=Ye...    69   3e-11
UniRef50_B3RAD9 SctQ: non flagellar T3S system conserved protein...    69   4e-11
UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Ther...    69   5e-11
UniRef50_B3Q297 Type III secretion system translocation protein ...    67   1e-10
UniRef50_P55719 Probable translocation protein y4yK n=5 Tax=Rhiz...    67   2e-10
UniRef50_Q7NUS2 Surface presentation of antigens; secretory prot...    67   2e-10
UniRef50_P74860 Secretion system apparatus protein ssaQ n=37 Tax...    66   3e-10
UniRef50_UPI00019F17D0 translocation protein in type III secreti...    65   5e-10
UniRef50_B8DI89 Flagellar motor switch protein n=17 Tax=Listeria...    65   7e-10
UniRef50_B2V6Q2 Surface presentation of antigens (SPOA) protein ...    65   7e-10
UniRef50_B1K4V5 Type III secretion system apparatus protein YscQ...    64   1e-09

>UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Proteobacteria
           RepID=FLIN_ECOLI
          Length = 137

 Score =  199 bits (507), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI
Sbjct: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
           RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


>UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=Enterobacteriaceae
           RepID=FLIN_SALTY
          Length = 137

 Score =  191 bits (485), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 123/137 (89%), Positives = 133/137 (97%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSDMNNP+D+N GA+DDLWA+AL+EQK+T++KSAA+ VFQQ GGGDVSG +QDIDLIMDI
Sbjct: 1   MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
           RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


>UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicutes
           RepID=A4IMA6_GEOTN
          Length = 393

 Score =  145 bits (367), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/147 (36%), Positives = 95/147 (64%), Gaps = 13/147 (8%)

Query: 3   DMNNPADDNNGAMDDLWAEALS------------EQKSTSSKSAAETVFQQFGGGDVSGT 50
           +   PA     A D +++ A S            E++S + +      F +F    ++ T
Sbjct: 247 EEPQPAPAYAHASDGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAAT 306

Query: 51  -LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
             ++++L+ D+P+++TVELGRT+ +++E+L+L+ GS++ LD LAGEP+DI +N  LIA+G
Sbjct: 307 EARNLELLFDVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKG 366

Query: 110 EVVVVADKYGVRITDIITPSERMRRLS 136
           EVVV+ + +GVRITDI++ ++R++RL 
Sbjct: 367 EVVVIDENFGVRITDIVSQNDRLKRLK 393


>UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n=77
           Tax=Proteobacteria RepID=FLIN_PECCC
          Length = 106

 Score =  144 bits (365), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/106 (83%), Positives = 95/106 (89%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           +   E +F+   G D  G LQDIDLI+DIPVKLTVELGRT+MTIKELLRLTQGSVVALDG
Sbjct: 1   RPTTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDG 60

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           LAGEPLDILINGYLIAQGEVVVV+DKYGVRITDIITPSERMRRLSR
Sbjct: 61  LAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLSR 106


>UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion protein n=3
           Tax=Clostridiales RepID=C7ILI0_9CLOT
          Length = 400

 Score =  144 bits (363), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 76/109 (69%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
             Q+  S  S     FQ F  G  +   ++I LIMD+P+++TVELGRT+  IK++L    
Sbjct: 292 EPQRQRSPVSVQPVQFQAFDDGLSATEKKNISLIMDLPLQVTVELGRTQKLIKDILEFGS 351

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           GSV+ LD LAGEP+DIL+NG  IA+GEVVV+ + +GVRITDII PS+R+
Sbjct: 352 GSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400


>UniRef50_Q47I10 Type III secretion system outer membrane O protein n=57
           Tax=Proteobacteria RepID=Q47I10_DECAR
          Length = 147

 Score =  144 bits (363), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 104/139 (74%), Gaps = 5/139 (3%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAE----TVFQQFGG-GDVSGTLQDIDLIM 58
            + P +D+    +D WA A+SEQ  + + +A       +F  FGG    +G + ++D+I+
Sbjct: 9   ESTPVEDDGQISEDDWAAAMSEQAISDAPAAMAAQPADIFPSFGGNAGNAGMMNELDMIL 68

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIPV++TVELGRT++TIK LL+L  GSVV LD +AGEP+D+++NG LIAQGEVVVV DK+
Sbjct: 69  DIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVNDKF 128

Query: 119 GVRITDIITPSERMRRLSR 137
           G+R+TDIITPSERMR+L+R
Sbjct: 129 GIRLTDIITPSERMRKLNR 147


>UniRef50_Q2LT02 Flagellar motor switch protein n=2 Tax=Deltaproteobacteria
           RepID=Q2LT02_SYNAS
          Length = 163

 Score =  143 bits (362), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/129 (44%), Positives = 85/129 (65%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
           +DD+N   +D+  E    Q  T     +   F++   G       D+D I+DIP+ L+VE
Sbjct: 35  SDDDNFGWEDVKEELAQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVE 94

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LGR RM I ELL+L QGS++ L  LAGEP+D+ +N  LIA+GEVVVV +K+G+R+TDI++
Sbjct: 95  LGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNEKFGIRLTDIVS 154

Query: 128 PSERMRRLS 136
           P+ER+ +L 
Sbjct: 155 PAERVNKLR 163


>UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=5 Tax=Bacteria
           RepID=B0THB7_HELMI
          Length = 375

 Score =  142 bits (358), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/97 (51%), Positives = 71/97 (73%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F             ++ LIMD+P+++TVELG++R TI+++L L  GSV+ LD LAGEP+D
Sbjct: 278 FAPLQPQRSGKDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVD 337

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           IL+NG LIA+GEVVV+ + +GVRITDI++P ER+  L
Sbjct: 338 ILVNGKLIAKGEVVVIDENFGVRITDIVSPIERIGNL 374


>UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6B2_THEAS
          Length = 375

 Score =  142 bits (358), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 84/121 (69%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           D+ +    S   ST+        F   GG +V+ +   IDLI DIPV++TVELGRTR TI
Sbjct: 254 DEGFYAPRSASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTI 313

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
            E+L ++ GSVV L+ +AGEP+D+L+NG LIA+GEVVV+ + +GVR+T+I++ +ER+R +
Sbjct: 314 GEILNMSPGSVVELNRMAGEPVDVLVNGKLIARGEVVVIDENFGVRVTEIVSRAERIRSM 373

Query: 136 S 136
            
Sbjct: 374 G 374


>UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion protein n=15
           Tax=Bacteria RepID=C6D2V9_PAESJ
          Length = 421

 Score =  139 bits (352), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 3/137 (2%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSA--AETVFQQFGGGD-VSGTLQDIDLIM 58
           +   NP   +      +  +        ++++       F  F     V     +++L++
Sbjct: 284 NQPYNPYQQSAAFDIQMQPQGPQTYGHAANRNVNVQPVQFANFNQAPYVQTDETNLNLLL 343

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIP+K+TVELGRT+  IK++L L+QGS++ LD LAGEP+DIL+N  LIA+GEVVV+ + +
Sbjct: 344 DIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENF 403

Query: 119 GVRITDIITPSERMRRL 135
           GVR+TDI++  +R+++L
Sbjct: 404 GVRVTDIVSQWDRIQKL 420


>UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema pallidum
           RepID=B2S3V9_TREPS
          Length = 348

 Score =  138 bits (349), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           M  P      +        +      +S S     F             +I LIMD+ ++
Sbjct: 219 MQRPQAQVGNSQMG--GVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFME 276

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +TVELGRTRM IK++L + +G ++ LD LAGEP+DIL+N  LIA+GEVVV+ + +GVR+T
Sbjct: 277 VTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVT 336

Query: 124 DIITPSERM 132
           +I++P ER+
Sbjct: 337 EILSPGERI 345


>UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Exiguobacterium RepID=B1YI92_EXIS2
          Length = 376

 Score =  138 bits (348), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 5   NNPADDNNGAMDDLWA---EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
             P  +   A         EA  EQK       +   F QF      G   +I ++ D+P
Sbjct: 244 QEPVREQPTAPQQQPEPRYEAPPEQKK-EPVGVSPVQFGQFSEVQQEGPPGNIGMLYDVP 302

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           + +TVELGRTR +++++L LTQGS++ LD LAGEP+D+ +N  LIA GEVVV+ + +GVR
Sbjct: 303 LNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIATGEVVVIEENFGVR 362

Query: 122 ITDIITPSERMRRL 135
           IT+I+   ER+R  
Sbjct: 363 ITEIVNTKERLRMF 376


>UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion protein n=4
           Tax=Bacteria RepID=B8FTQ8_DESHD
          Length = 417

 Score =  138 bits (348), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 72/105 (68%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
                    F     GD     ++++LI+D+P++++VELG+ + TIKE+L L  GSV+ L
Sbjct: 308 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 367

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           D LAGEP+D+++NG LIA+ EVVV+ + +G+RITDI+ P ERM +
Sbjct: 368 DRLAGEPVDMIVNGKLIAKCEVVVINETFGIRITDIVQPGERMTK 412


>UniRef50_Q31FQ0 Flagellar motor switch protein FliN n=5 Tax=Gammaproteobacteria
           RepID=Q31FQ0_THICR
          Length = 153

 Score =  138 bits (347), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/139 (46%), Positives = 94/139 (67%), Gaps = 5/139 (3%)

Query: 3   DMNNPADDNNGAMDDLWAEALSEQK-STSSKSAAETVFQQFGGGDV----SGTLQDIDLI 57
           D    A+ ++ A DD W  ALSEQ   TSS ++ E     F   +     S    D+D++
Sbjct: 15  DEQAEAEGSDAAGDDPWGAALSEQAAETSSNNSDEIDAASFDALEKGRGDSSEKVDLDVL 74

Query: 58  MDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADK 117
           +DIPV L +E+GR +++I+ LL  TQGSV+ +D LAGEPLD+L+NG LIA GEVVV+ DK
Sbjct: 75  LDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVINDK 134

Query: 118 YGVRITDIITPSERMRRLS 136
           +GVR+TD+++P ER+++L 
Sbjct: 135 FGVRLTDVVSPQERIKKLK 153


>UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes
           RepID=Q0AYM4_SYNWW
          Length = 398

 Score =  137 bits (346), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/119 (42%), Positives = 81/119 (68%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
             + ++  E  +    +     F      ++  + Q++DLIMD+P+ ++VELG+T+ TI 
Sbjct: 279 QAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDVPLDVSVELGKTKKTIG 338

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           E+L L QG+++ LD LAGEP+D+L+NG LIA+GEVVV+ + YG+RIT II+P +RM +L
Sbjct: 339 EILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDRMNKL 397


>UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZF88_BREBN
          Length = 455

 Score =  136 bits (344), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 27  KSTSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
            + +  +     F   GG  + +G +Q+++L+ DIP+++TVELGRT+  I+E+L L+ GS
Sbjct: 345 PAANQANVVPAQFAPLGGAPMYTGDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGS 404

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           ++ LD LAGE +DIL+N  LIA+GEVVV+ + +GVR+TDII+  +R+++L
Sbjct: 405 IIQLDKLAGEHVDILVNNKLIAKGEVVVIDENFGVRVTDIISQIDRVQKL 454


>UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Proteobacteria
           RepID=Q0AEF2_NITEC
          Length = 157

 Score =  136 bits (342), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/111 (61%), Positives = 90/111 (81%), Gaps = 1/111 (0%)

Query: 28  STSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
                +   +VF+QF   +V + T  DID+I+DIPV+LTVELGRTR+ IK LL+L QGSV
Sbjct: 47  PDEDLTKPSSVFEQFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSV 106

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           + LDG+AGEP+D+L+NG LIAQGEVVVV +K+G+R+TDIITPSER+R+L+R
Sbjct: 107 IELDGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRKLNR 157


>UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae
           RepID=A6LMJ7_THEM4
          Length = 370

 Score =  136 bits (342), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDV----SGTLQDIDLIMDIPV 62
           P        +++    +SE    +  S +   FQ F  G +    S   + I  ++DIP+
Sbjct: 237 PQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQSFESGGIVKSTSEIPERIKALLDIPL 296

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
            + VELG+T++T+K+++ L+ GS++ LD L GEP+DI++NG LIA+GEVVV+ + +GVRI
Sbjct: 297 NVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRI 356

Query: 123 TDIITPSERMRRLS 136
           T+I++P ER   L 
Sbjct: 357 TEIVSPQERFYTLE 370


>UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Bacillus cellulosilyticus DSM 2522
           RepID=D2LSG7_BACS4
          Length = 398

 Score =  134 bits (339), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKL 64
           +  + +  A  +    +   +    S       F  F    + +   +++D+++DIP+++
Sbjct: 268 DATNQHQSARQEPQFVSNGSRLPDRSAEVQPAAFSNFETPQLGNNEAKNLDMLLDIPLEV 327

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           TVELGRT+ +IK++L LTQGS++ LD LAGEP+DIL+N  LIA+GEVVV+ + +GVR+TD
Sbjct: 328 TVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTD 387

Query: 125 IITPSERMRRL 135
           I++  ER+  L
Sbjct: 388 IVSKRERLNNL 398


>UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Proteobacteria
           RepID=A1WGY8_VEREI
          Length = 163

 Score =  134 bits (339), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 17/150 (11%)

Query: 5   NNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTL------------- 51
             PAD+      + WAEAL EQK +    A         G  V   L             
Sbjct: 13  GAPADNAADDPFNGWAEALKEQKRSDEPPAEGQQGGPLSGEPVRPPLAGAASGASAVNGG 72

Query: 52  ----QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
                DI+ ++DIPV+L+VELGRT++ IK +L+L QGSVV LD LAGEP+D+L+NGYLIA
Sbjct: 73  EQVINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIA 132

Query: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137
           QGEVVVV DK+G+R+TD++TPSER+RR+SR
Sbjct: 133 QGEVVVVNDKFGIRLTDVVTPSERLRRVSR 162


>UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion protein n=5
           Tax=Bacteria RepID=B2A359_NATTJ
          Length = 422

 Score =  134 bits (338), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 76/112 (67%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
            EQ+        E    +       G   +I+LIMD+P+++TVELG+T+  I+E+L L  
Sbjct: 310 QEQQPKKDYQPVEFSPLEGHQSAAKGENSNIELIMDVPLEVTVELGQTKKKIQEILELVP 369

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           GS++ LD +AGEP+DI +NG LIA+GEVVV+ + +G+RIT+II+P ER+ +L
Sbjct: 370 GSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDENFGIRITEIISPVERINKL 421


>UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathway protein FliN n=17
           Tax=Proteobacteria RepID=Q3SIG7_THIDA
          Length = 132

 Score =  134 bits (338), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 68/101 (67%), Positives = 85/101 (84%), Gaps = 1/101 (0%)

Query: 38  VFQQFGGGDVS-GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           +F++F G   S G   DID I+DIPV LTVELGRT++ IK LL+L QGSVV LDGLAGEP
Sbjct: 32  IFKEFSGSASSTGLANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEP 91

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +D+L+NG LIAQGEVVVV DK+GVR+TDIITP+ER+R+L++
Sbjct: 92  MDVLVNGCLIAQGEVVVVNDKFGVRLTDIITPAERIRKLNK 132


>UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Proteobacteria
           RepID=C6BUR6_DESAD
          Length = 229

 Score =  134 bits (337), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 14/132 (10%)

Query: 19  WAEALSEQKSTSSKSAAETVF--------------QQFGGGDVSGTLQDIDLIMDIPVKL 64
           WA AL+E      +   E  F               +       G+ +D+D I+DIP+ +
Sbjct: 98  WAAALAEDTGDDIRKEKEQEFLRTQTRDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDV 157

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           + ELGR +M I ELL+L  GSVV L  LAGEPL+I +NG L+A+GE VV+ +K+G+R+TD
Sbjct: 158 SAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINEKFGIRLTD 217

Query: 125 IITPSERMRRLS 136
           II+P ER++ L+
Sbjct: 218 IISPIERVKHLA 229


>UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Dethiosulfovibrio
           peptidovorans DSM 11002 RepID=C1TKI4_9BACT
          Length = 384

 Score =  134 bits (337), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 5   NNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFG----GGDVSGTLQDIDLIMDI 60
             PA              +S+  S  +    +    QF         S    +I LI DI
Sbjct: 248 QRPAQQQAPRPSGGGGAGMSQPPSGEASPPVDVRPAQFSPLQPAAVDSSLPSNIGLIADI 307

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PV++TVELGRTR ++ E+L    GSV+ LD +AGEP+D+L+NG LIA+GEVVV+ + +GV
Sbjct: 308 PVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDENFGV 367

Query: 121 RITDIITPSERMRRLS 136
           R+T+I+   E+++ + 
Sbjct: 368 RVTEILNVGEKIQSIG 383


>UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clostridium thermocellum
           RepID=A3DCN7_CLOTH
          Length = 406

 Score =  133 bits (336), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 29  TSSKSAAETVFQQFGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
            +  +     F+ F  G  +S   ++I LIMD+P+++TVELGRT   IK++L    GS++
Sbjct: 302 RNPINVQPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSII 361

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
            LD LAGEP+DIL+NG +IA GEVVV+ + +GVRITDI+ PS+R+
Sbjct: 362 ELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPSKRL 406


>UniRef50_Q2NX05 Flagellar motor switch protein FliN n=5 Tax=Enterobacteriaceae
           RepID=Q2NX05_SODGM
          Length = 134

 Score =  132 bits (333), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTV 66
                G    L          T+  + +   F      +  S   +D+ LI+DIPVK+TV
Sbjct: 4   TPHTPGDEAPLHETDGQSLGDTACPAPSRPEFPPASTTEGGSPLTEDLSLILDIPVKMTV 63

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           ELGRTRMTI+ELL L+Q +VV L+G AGEPLDILINGYLIA+GEVVV+ ++YGVRI DI+
Sbjct: 64  ELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGEQYGVRIADIV 123

Query: 127 TPSERMRRLSR 137
           TP+ERMRRLSR
Sbjct: 124 TPAERMRRLSR 134


>UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halothermothrix orenii H
           168 RepID=B8CYQ5_HALOH
          Length = 375

 Score =  132 bits (333), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/109 (44%), Positives = 76/109 (69%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
               +       F  F  G+ +   Q+++LI D+P+++TV LG+TRMTIK++L L +GS+
Sbjct: 267 AGEENVDVKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSI 326

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           V L+ LAGEP+D+L+NG LIA+GEVVV+ + +G R+ DII+P ER+  +
Sbjct: 327 VELEKLAGEPVDLLVNGKLIAKGEVVVIDENFGFRVKDIISPMERLNNI 375


>UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Thermotoga
           RepID=A8F896_THELT
          Length = 343

 Score =  132 bits (332), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 6/110 (5%)

Query: 34  AAETVFQQFGGGD------VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
                FQ+F           S     ++L++D+P+K+ VELGR +MT+K++L +  GS++
Sbjct: 230 VQPVQFQEFDQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLI 289

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
            LD L GEP+DIL+NG LIA+GEVVVV + +GVRIT+I+TP +R+  +  
Sbjct: 290 ELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRIYSIRE 339


>UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WWF9_ALIAD
          Length = 381

 Score =  132 bits (332), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQ---DIDLIMDIPVKL 64
           A+      DD  A     +    S +     F  F  G      +   ++ L+ D+P+ +
Sbjct: 250 AEARGKNRDDAQAANRGREDEGPSVAVRRPAFPDFDEGVTPRDARPVANLSLLYDVPLNV 309

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           TVELGR +  I+E+L L  GS++ LD LAGEP+DI +N   IA GEVVV+ + +GVR+TD
Sbjct: 310 TVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTD 369

Query: 125 IITPSERMRRL 135
           I+   +R+  L
Sbjct: 370 IVQADKRIDPL 380


>UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Ammonifex degensii KC4 RepID=C9R9W6_AMMDK
          Length = 360

 Score =  131 bits (331), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/127 (41%), Positives = 80/127 (62%)

Query: 11  NNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
                +  ++E  S  +  ++ +A            +      ++LI+DIP+K++V LGR
Sbjct: 230 EEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRLELILDIPLKVSVVLGR 289

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           TR  IKE+L L  GS++ LD LA EP++IL+NG L+A+GEVVVV + +GVRIT I+TP E
Sbjct: 290 TRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEENFGVRITSIVTPQE 349

Query: 131 RMRRLSR 137
           R+R L+R
Sbjct: 350 RLRYLAR 356


>UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C1A4_SPHTD
          Length = 144

 Score =  131 bits (329), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 67/112 (59%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
            A  EQ    + S     F        SG  Q I+ + D+ V+LT ELG  RM IK +L 
Sbjct: 30  AAPGEQAGGEAASVHPAAFMALSQETQSGGPQSIEFLRDVEVELTAELGTARMQIKHILG 89

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           L  GSVV L+ LAGEP+DI++N  LIA+GEVVVV +K+ VR+ +I+ P  R+
Sbjct: 90  LRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDEKFAVRVVEIVPPERRL 141


>UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=Clostridium
           botulinum D str. 1873 RepID=C5VT98_CLOBO
          Length = 394

 Score =  131 bits (329), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 85/135 (62%), Gaps = 2/135 (1%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           ++ M N    +N  ++    E  +  KS    +  +  F      +++G  Q+IDLI+D+
Sbjct: 260 INKMQNQETSSNSQVEPKPVETYT--KSQPQVNIQKASFAPLQESNINGAPQNIDLILDV 317

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P++++V LG+T+ +IK++L L  GS++ LD LA EP++I +NG  IA GEVVVV + +GV
Sbjct: 318 PLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGV 377

Query: 121 RITDIITPSERMRRL 135
           RI +I++  ER++ L
Sbjct: 378 RIVNIVSGEERVKSL 392


>UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) n=1
           Tax=Coprothermobacter proteolyticus DSM 5265
           RepID=B5Y7F0_COPPD
          Length = 287

 Score =  131 bits (329), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 85/132 (64%), Gaps = 5/132 (3%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           SD++  AD  +  ++   A  + E           T  Q    GD+    ++++L++D+ 
Sbjct: 158 SDVSERADAVSSEVEKTSASVMQENDVEDV-----TFPQLRPEGDIQPLPRNLELLLDVK 212

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V ++VELGR+R++IK+LL L  GS++ LD LAGEP+DIL+NG  IA+GEVVV+ + +GVR
Sbjct: 213 VNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDESFGVR 272

Query: 122 ITDIITPSERMR 133
           I DII P ER++
Sbjct: 273 ILDIIAPKERLK 284


>UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desulfotomaculum
           reducens MI-1 RepID=A4J737_DESRM
          Length = 411

 Score =  131 bits (329), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 83/127 (65%)

Query: 11  NNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
           ++   D+L    + E     + +              S   +++DLI+DIP+K++V LGR
Sbjct: 283 DDRESDELAGIMMQETAPPPTPAMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGR 342

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           T+  IK++L++  GSVV LD LA EP+DIL+NG L+A GEVVVV + +G+RIT+II+P E
Sbjct: 343 TKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPME 402

Query: 131 RMRRLSR 137
           R++RLS+
Sbjct: 403 RVKRLSK 409


>UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspira
           RepID=C0R179_BRAHW
          Length = 360

 Score =  130 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 67/104 (64%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
                F             +I L+MD+ + +TVELGR  MTI+++L L +GS++ L  LA
Sbjct: 257 VQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLA 316

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           GEP+D+L+NG LIA+GEVVV+ + +GVR+TDII P +R+    R
Sbjct: 317 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIINPMDRLTNKPR 360


>UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria RepID=A5D0K1_PELTS
          Length = 422

 Score =  130 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/129 (42%), Positives = 76/129 (58%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVEL 68
            +     + L      EQ+      AA     +      +   + +DLI+DIP+K+TV L
Sbjct: 294 PEPGKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVIL 353

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           GRTR  IK++L LT GSVV L  L  EP+++L+NG L+A GEVVVV + +GVRIT II P
Sbjct: 354 GRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGP 413

Query: 129 SERMRRLSR 137
            ER++ L R
Sbjct: 414 EERLQNLRR 422


>UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobacillales
           RepID=A8U602_9LACT
          Length = 360

 Score =  129 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 76/128 (59%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVEL 68
                      A     Q++       +  FQ+        T +++DLIMD+P++ +V L
Sbjct: 233 QAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNLDLIMDVPLQFSVML 292

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           G ++ TIK++L L  GSVV L+ +  EPL+I +NG LIA+GEVVV+ + +G+RIT+I++ 
Sbjct: 293 GESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVINESFGIRITNILSK 352

Query: 129 SERMRRLS 136
            +R++ L+
Sbjct: 353 EQRIKHLN 360


>UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria
           RepID=FLIY_BACSU
          Length = 378

 Score =  129 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 80/131 (61%), Gaps = 1/131 (0%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGD-VSGTLQDIDLIMDIPVKLT 65
           P             +     K  +    +   F  F   + V   + ++D+++DIP+ +T
Sbjct: 248 PEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLLDIPLSIT 307

Query: 66  VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           VELGRT+ ++KE+L L+ GS++ LD LAGEP+DIL+N  ++A+GEVVV+ + +GVR+TDI
Sbjct: 308 VELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDI 367

Query: 126 ITPSERMRRLS 136
           ++ +ER+  L 
Sbjct: 368 LSQAERINNLK 378


>UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Thermotogaceae
           RepID=A5IJA7_THEP1
          Length = 346

 Score =  129 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/86 (54%), Positives = 70/86 (81%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
             ++L++DIP+++TVELGRTRMT+K +L +  GS++ LD L GEP+DIL+NG LIA+GEV
Sbjct: 261 DKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEV 320

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
           VV+ + +GVRIT+I++P ER+  L+ 
Sbjct: 321 VVIDENFGVRITEIVSPKERLELLNE 346


>UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria
           RepID=Q6MI47_BDEBA
          Length = 122

 Score =  129 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/122 (45%), Positives = 85/122 (69%)

Query: 15  MDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMT 74
           M D   + L++Q    +   AE+  ++      +   +++ LI+DIP+K++VELGRT+M 
Sbjct: 1   MSDDTLDNLADQLVAEAAGMAESSGRKASSEMPTHKDRNLSLILDIPLKVSVELGRTKMP 60

Query: 75  IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           + ELL LTQGSV+ L  LAGEP+++ +N  LIA+GE VVV +K+GVR+TDII+P+ER+ +
Sbjct: 61  VSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPAERVEQ 120

Query: 135 LS 136
           L 
Sbjct: 121 LR 122


>UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Proteobacteria
           RepID=FLIN_PSEAE
          Length = 157

 Score =  129 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 83/120 (69%), Gaps = 5/120 (4%)

Query: 22  ALSEQKSTSSKSAAETVFQQFGGGDVSGTL-----QDIDLIMDIPVKLTVELGRTRMTIK 76
           A       +  S      ++FG    + T+      ++D+I+DIPV +++E+G T ++I+
Sbjct: 38  AQGGATPVAEPSTPRAPMEEFGASPKAPTISGLEGPNLDVILDIPVTISMEVGHTDISIR 97

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            LL+L QGSV+ LD LAGEPLD+L+NG LIA GEVVVV +K+G+R+TD+I+PSER+++L 
Sbjct: 98  NLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR 157


>UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms RepID=B9PA59_POPTR
          Length = 284

 Score =  129 bits (324), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 70/88 (79%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           S   + ID ++D+P+ ++V +G  RM IK+LL+L QGSVV LD LAGEP++ILIN  L+A
Sbjct: 197 SEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVA 256

Query: 108 QGEVVVVADKYGVRITDIITPSERMRRL 135
           +GEVV+V DKYGVR+TDI++P ER++ L
Sbjct: 257 RGEVVMVNDKYGVRLTDIVSPIERIKSL 284


>UniRef50_B5YIZ3 Flagellar motor switch protein FliN n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YIZ3_THEYD
          Length = 139

 Score =  128 bits (323), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/120 (45%), Positives = 83/120 (69%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
           D+      E+   + +        +F   +     +DID I+DIP++L V +GRTR+ ++
Sbjct: 20  DMAKALEMEKAMKAKEEVQSPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRILVQ 79

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           ELL+LTQGSVVALD LAGEP+++ +NG L+ +GEVVVV +K+G+RITDII+P ER+++L 
Sbjct: 80  ELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNEKFGIRITDIISPQERVKQLG 139


>UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clostridia
           RepID=A6TRP4_ALKMQ
          Length = 393

 Score =  128 bits (321), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 72/120 (60%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           D    +        S  +     FQ F      G  ++I LI D+P+ +TVELGRT   I
Sbjct: 274 DAPVQQRQQPSLENSKINVQPVQFQSFDQQSNRGLPENIALIQDVPLSVTVELGRTVKKI 333

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
            E+L    G+++ L+ + GEPLDIL+NG  +A+GEVVV+ + YG+RITDI+ P++R+ ++
Sbjct: 334 SEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRLSKI 393


>UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion protein n=5
           Tax=Thermoanaerobacterales RepID=B0K9T5_THEP3
          Length = 375

 Score =  128 bits (321), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 74/112 (66%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
           +++  +        F +          +++DLI+D+P+ +TVELG+T+  IK++L L++G
Sbjct: 264 KEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEG 323

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           S++ LD LAGEP+DIL NG  IA+GEVVV+ + +GVRI DI+  S+R+  + 
Sbjct: 324 SIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRISNIE 375


>UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I888_9CLOT
          Length = 370

 Score =  127 bits (320), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 74/106 (69%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
                   F+    G V  + ++IDLI+D+P++++V LGRT+ +IK++L L+ GS++ LD
Sbjct: 265 PVEVHGATFEPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELD 324

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            LA EP+++LING  IA GEVVVV + +GVRIT I++ ++R+R L 
Sbjct: 325 KLAEEPVEVLINGKKIAYGEVVVVDENFGVRITSIVSGADRIRTLK 370


>UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM
           15702 RepID=B0MPD4_9FIRM
          Length = 419

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 77/115 (66%), Gaps = 1/115 (0%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +  Q + + ++A    F+ F     S   +++ L+MD+P++++VE+G T+  IK++L  +
Sbjct: 304 MQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFS 363

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           QG+++ L+  AG P+D+++NG LIA+G+VVV+ D + VRIT+I+  S+ M  L +
Sbjct: 364 QGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIV-KSKFMDSLGK 417


>UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jonesia denitrificans
           DSM 20603 RepID=C7R0I7_JONDD
          Length = 259

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQD--IDLIMDIPVKLTVELGRTRM 73
               A A + Q   S+ S  E   + F    +     D  + L+ D+ + LTVE+GR ++
Sbjct: 140 PSPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTVEIGRAKL 199

Query: 74  TIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133
            ++++L LT GS+V LD +AG P D+L+NG+L+A+GEVVVV + YG+R+T+II  +E   
Sbjct: 200 PVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIIDTTEVFS 259


>UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kineococcus
           radiotolerans SRS30216 RepID=A6W8L1_KINRD
          Length = 249

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
               +  A    F   G    +G  + +DL+ D+ + +TVELGRT MT+++LL LT GSV
Sbjct: 144 AQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSV 203

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           V LD  AG P D+L+NG LIA+GEVVVV + Y +RIT+I+TP 
Sbjct: 204 VELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITEIVTPE 246


>UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathway protein FliN n=9
           Tax=Xanthomonas RepID=Q3BU42_XANC5
          Length = 112

 Score =  126 bits (318), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 34  AAETVFQQFGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92
           A+   F       D +    ++D+I+D+PV L++E+GR R+ I+ LL+L QGSVV L+  
Sbjct: 9   ASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERG 68

Query: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           AGEPLD+ +NG LIA GEVVV+ D++G+R+TD+++PSER+RRL 
Sbjct: 69  AGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR 112


>UniRef50_B8FK37 Flagellar motor switch protein FliN n=3 Tax=Bacteria
           RepID=B8FK37_DESAA
          Length = 119

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/119 (47%), Positives = 81/119 (68%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           +  EAL ++ + +  +   T      G   +    D+D I+DIP+ +TVELGRT M IK+
Sbjct: 1   MEEEALQQEMNENLPAENMTDGLPAAGDADADGDGDLDFILDIPLDITVELGRTSMRIKD 60

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           LL+L QG+VV L  LAGEP++I +NG L A+GEVVVV +K+GVR+TDI++P ER++ L 
Sbjct: 61  LLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVVVNEKFGVRLTDIVSPQERIKSLR 119


>UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clostridium
           RepID=A6M1D2_CLOB8
          Length = 398

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 72/106 (67%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
                   F+     +    +++IDLI+D+P+ ++V LGRT+ +I+++L L  GS++ LD
Sbjct: 293 PVEVHAATFEPLMPQNSVPPIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELD 352

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            LA EP++IL+NG  IA GEVVVV + +G+RIT+I++  ER++RL 
Sbjct: 353 KLAEEPVEILVNGKQIALGEVVVVDENFGIRITNIVSSVERIKRLK 398


>UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BEY5_PETMO
          Length = 372

 Score =  126 bits (316), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKL 64
           +     N          + ++K    +      F++          L  ++L++D+P++L
Sbjct: 241 DEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVPLEL 300

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            VELG T++ ++E+L L +GS++ L+ LAGEPLDI  NG LIA+GEVVV+ + +G+R+T+
Sbjct: 301 KVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIRVTE 360

Query: 125 IITPSERMRRLS 136
           I++  ERM+ L 
Sbjct: 361 IVSLRERMKTLK 372


>UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridiales
           RepID=C4ZAN3_EUBR3
          Length = 404

 Score =  125 bits (314), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 17  DLWAEALSEQKS-TSSKSAAETVFQQFGGGDVS-GTLQDIDLIMDIPVKLTVELGRTRMT 74
            +  + +  Q    +  +     F  FG         ++IDLIMD+P+++TVELGRT+ +
Sbjct: 283 GMMNQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKS 342

Query: 75  IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           I E+L    G ++ L+ LAGEP+DIL+NG  +A+GEVVV+ + +GVRIT+I+   
Sbjct: 343 ISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397


>UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein n=4
           Tax=Deltaproteobacteria RepID=Q30VB8_DESDG
          Length = 175

 Score =  124 bits (312), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/97 (50%), Positives = 73/97 (75%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           ++          +++D I+DIP+ ++ ELGRTR+ I ELL+L QGSVV L+ LAGEPL+I
Sbjct: 79  EEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEI 138

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            +NG L+A+GE VV+ +K+GVR+TDII+P ER+++L 
Sbjct: 139 YVNGKLVARGEAVVINEKFGVRLTDIISPIERVKQLG 175


>UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W1I6_DESAS
          Length = 572

 Score =  124 bits (312), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVEL 68
              N   ++L   A   Q  T  +S  E   ++            I+LI+D+P+ +TV L
Sbjct: 446 PVTNKPPENLSPMAAGGQNQTGYQSVPE---ERVSQTPADVNWDKINLILDVPLNVTVVL 502

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           G+T+  IK++L LT GSVV L  L  EP+++L+NG L+A+GEVVVV + +GVRIT++ITP
Sbjct: 503 GKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVARGEVVVVNENFGVRITNVITP 562

Query: 129 SERMRRL 135
            ER++ L
Sbjct: 563 QERIQYL 569


>UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax=Bacteria
           RepID=C4Z5H2_EUBE2
          Length = 437

 Score =  123 bits (310), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 3/118 (2%)

Query: 12  NGAMDDLWAEALSEQ--KSTSSKSAAETVFQQFGGGDVS-GTLQDIDLIMDIPVKLTVEL 68
              M  +  + +  Q        + A   FQ F          ++I+LI D+P+++TVEL
Sbjct: 319 GMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDVNPISQKENIELIKDVPLEVTVEL 378

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           GRT  +IK++L    G++V L+ +AGE +D+L+NG  +A+GEVVV+ + +GVRIT+II
Sbjct: 379 GRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFGVRITEII 436


>UniRef50_Q0AA08 Flagellar motor switch protein FliN n=49 Tax=cellular organisms
           RepID=Q0AA08_ALHEH
          Length = 226

 Score =  123 bits (309), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 89/132 (67%), Gaps = 2/132 (1%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGG--DVSGTLQDIDLIMDIPVKL 64
           P + + G      A     Q++  ++ A     +   G   ++     ++D+IMDIPV L
Sbjct: 95  PEEPSAGQRAATEARETQRQENWQAERAELDELEPDAGAGRNLGDEEANLDVIMDIPVTL 154

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           ++E+GRT+++I+ LL+L QGSVV LD LAGEPLD+++NG LIA GEVVVV +++G+R+TD
Sbjct: 155 SMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNERFGIRLTD 214

Query: 125 IITPSERMRRLS 136
           +I+ +ER+++L 
Sbjct: 215 VISAAERVKKLR 226


>UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G689_ABIDE
          Length = 370

 Score =  123 bits (308), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 22  ALSEQKSTSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
             +    +   + A   FQ F          ++I LIMD+P+++TVELGRT  TIKE+L 
Sbjct: 264 MPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELGRTNKTIKEILD 323

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
            + G+++ L+ LAGE +D+L+NG  +A+GEVVV+ D +G+RIT+I+
Sbjct: 324 FSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369


>UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P9X9_9FIRM
          Length = 446

 Score =  122 bits (306), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
            +     + QK  + ++     F      D   +  ++DL+M + + ++VE+G+T+  IK
Sbjct: 324 GMQEPQPATQKPINVQNTQFPQF-TVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIK 382

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +++   QG+V+ L+  AG P+DI++NG L+A+G+VVV+ D +GVRIT+I+   E M  L 
Sbjct: 383 DIIDFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELMESLK 442

Query: 137 R 137
            
Sbjct: 443 E 443


>UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Bacteria RepID=A9KNE6_CLOPH
          Length = 401

 Score =  121 bits (303), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
            Q    + + A   FQ F          ++IDL++D+P+++TVELGRT  +I+E+L    
Sbjct: 298 PQGMVQNVNIAPAQFQPFVNTGSPLLQTENIDLLLDVPLEVTVELGRTSKSIREILDFAP 357

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           G++V L+ LAGEP+D+L+NG  +A+GEVVV+ + +G+R+TDII
Sbjct: 358 GTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDII 400


>UniRef50_Q6AJS8 Probable flagellar motor switch protein (FliN) n=1 Tax=Desulfotalea
           psychrophila RepID=Q6AJS8_DESPS
          Length = 123

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 72/98 (73%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           +Q      +   + +D + D+P++++VE+GR+++ IK+LL + +G V+ L+ +AG+PLD+
Sbjct: 26  EQEHTTLENNEARSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDL 85

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
            +N  LIA+GE V++ DK+G+R+TD+++ S+R+ RL +
Sbjct: 86  YVNSRLIARGEAVMIGDKFGIRLTDVVSASDRLERLGK 123


>UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moorella thermoacetica
           ATCC 39073 RepID=Q2RKB6_MOOTA
          Length = 395

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKLTVELGRTRMTIKE 77
            A A S +  T   + +    Q    G V G + ++IDLI+D+P+ + V LG     I++
Sbjct: 276 QASAPSSRAQTPGGAGSPGGGQTQRQGQVYGASSRNIDLILDVPLDIEVILGTAMKRIQD 335

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +L L  G++V LD L  EP+ I +NG  IAQGEVV+V + +GVRIT I+ P ER+  L +
Sbjct: 336 ILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIVNENFGVRITHILEPYERINHLRQ 395


>UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67K24_SYMTH
          Length = 126

 Score =  120 bits (301), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 21  EALSEQKSTSSKSAAETVFQQFG-GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
            AL  Q     +      F      G   G    + L+ D+ ++LTVELG++R +++E+L
Sbjct: 12  AALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREIL 71

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
            +  GSV+ LD  AGE +D+L+NG L+A+GEVVV+ + YG+RIT++I P 
Sbjct: 72  AMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINPE 121


>UniRef50_Q1NP93 Surface presentation of antigens (SPOA) protein n=2
           Tax=Deltaproteobacteria RepID=Q1NP93_9DELT
          Length = 136

 Score =  119 bits (299), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 86/138 (62%), Gaps = 4/138 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSS--KSAAETVFQQFGGGDVSGTLQDIDLIM 58
           M+D            D  W+ AL++Q   S   +    +     GG   S + Q++D ++
Sbjct: 1   MADEEKNQATEEAGDD--WSAALADQGKDSPAFEELEASGAAGGGGAAPSASTQNLDFLL 58

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           D+P+++TVELGRT M I +LL+LTQGSVV LD  AG  ++I +N  L+ +GEVVVV +++
Sbjct: 59  DVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNERF 118

Query: 119 GVRITDIITPSERMRRLS 136
           G+R+T+II+ ++R++ + 
Sbjct: 119 GIRVTEIISQADRIKSIG 136


>UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) n=1
           Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5A1_THERP
          Length = 128

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 5/117 (4%)

Query: 21  EALSEQKSTSSKSAAETVFQQ-----FGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           + L+  +  SS    ET  Q+          +    Q ID + D+ V+LT ELG  RM I
Sbjct: 6   DTLNRGQEPSSVRPPETPIQEARFVDLRDQPIGNGRQGIDFLRDVEVELTAELGSARMRI 65

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           K +L L  GSVV LD LAGEP+++ IN  LIA+GEVVVV +K+ VRIT+I++P +R+
Sbjct: 66  KHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDEKFAVRITEIVSPEKRL 122


>UniRef50_Q8D3E9 FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8D3E9_WIGBR
          Length = 135

 Score =  118 bits (296), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/138 (47%), Positives = 97/138 (70%), Gaps = 4/138 (2%)

Query: 1   MSDMNN-PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           M+D+   P    N +++DL  +   ++   +S+   E    +     +S   +DI+LI+D
Sbjct: 1   MNDIKKEPEKIKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKNKKLS---EDINLILD 57

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IP+K+T+ELGRT+MTI++LL L + S+V LDG  GEPLDILIN YL+A+GEVVV+ ++YG
Sbjct: 58  IPIKMTIELGRTKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKERYG 117

Query: 120 VRITDIITPSERMRRLSR 137
           ++I DIITP ER+RRL+R
Sbjct: 118 IKILDIITPEERIRRLNR 135


>UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lactobacillus ruminis
           ATCC 25644 RepID=C2ED81_9LACO
          Length = 409

 Score =  118 bits (296), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 70/103 (67%), Gaps = 1/103 (0%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
            ++  FQ   G        ++DL+MDIP+ L+V LG ++ +++E+L    GSV+ L+ L 
Sbjct: 308 VSQPSFQTLDGHAQVEG-DNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLT 366

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            EPLDIL+NG LIAQGEVVV+ D +GVRIT+I++ S+R+  + 
Sbjct: 367 DEPLDILLNGKLIAQGEVVVINDNFGVRITNILSQSQRINNMR 409


>UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ
          Length = 347

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 77/125 (61%), Gaps = 4/125 (3%)

Query: 11  NNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
                  +  E L   K+T+ +   E   +QF    V  T + ++LI+DIP+K+ V LGR
Sbjct: 227 PETEPAVMAHEMLEGAKATNIEKKVEKAEEQF----VLPTDEKLELILDIPLKVEVVLGR 282

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           TR  IKE+L    G+++ LD L  E +++L+NG L+A+GE+VVV + +G++I  I++P E
Sbjct: 283 TRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILSPKE 342

Query: 131 RMRRL 135
           R+ ++
Sbjct: 343 RLSKI 347


>UniRef50_B2V6S4 Flagellar motor switch protein FliN n=3 Tax=Sulfurihydrogenibium
           RepID=B2V6S4_SULSY
          Length = 194

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 87/146 (59%), Gaps = 11/146 (7%)

Query: 2   SDMNNPADDNNGAMDDL---WAEALSEQKSTSSKS-------AAETVFQQFGGGDVSGTL 51
           S+M N +    G+ +DL   W+E L E+KS S  +             + F   + S  +
Sbjct: 44  SEMLNESGKKEGSQEDLAAQWSEMLHEEKSESVDANTHQTPLKESEKKESFTKEEFSPEI 103

Query: 52  QD-IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
            + +D+++DIP+ +TVE+G   M+I+E+L+L   SV+ LD    EP+D+ +NG L+A+GE
Sbjct: 104 LNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGE 163

Query: 111 VVVVADKYGVRITDIITPSERMRRLS 136
           +  V D + ++IT+I+T  ER+R +S
Sbjct: 164 LYQVDDNFAIKITEILTKEERVRLVS 189


>UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Nocardioides sp. JS614
           RepID=A1SEN5_NOCSJ
          Length = 246

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 69/111 (62%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
           D+ A  L  +   +  +              +G  + I+++  + +++TVE+GR RMT++
Sbjct: 131 DVVAALLVPEALLAHPADDTPALPTTSAAAPTGDRRGIEMLHGVDMEVTVEIGRARMTVR 190

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           ELL L  G+V+ LD  AG P D+L+NG LIA+GEVVV+ + +G+RIT+I+T
Sbjct: 191 ELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIVT 241


>UniRef50_B4U6V5 Flagellar motor switch protein FliN n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U6V5_HYDS0
          Length = 149

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLT 65
            P   N+  +  LW EA+  Q  T   S+AE    Q    D+S   +D+  I+DIP+ +T
Sbjct: 22  EPTPQNDEDLMKLWEEAIQAQAQTE--SSAENQQAQATTQDIS---KDLQRILDIPLSIT 76

Query: 66  VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           V +G T +TIKELL L  GSV+ALD      + +  NG LIA+ E+VVV + +G+RI +I
Sbjct: 77  VVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEI 136

Query: 126 ITPSERMRRLS 136
           I   ER++ L+
Sbjct: 137 IEKEERVKSLA 147


>UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SNF8_9BACT
          Length = 299

 Score =  115 bits (288), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 72/106 (67%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
            +   E     FGGG   G+  ++DL++DI V ++V++G T+M +K++L +  G+++ LD
Sbjct: 193 PEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELD 252

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
             A EP++++IN  +IA+GEVV+V   +G RI +I++ +ER+++L 
Sbjct: 253 ESADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAERIKKLK 298


>UniRef50_D2R538 Flagellar motor switch protein FliN n=2 Tax=Planctomycetaceae
           RepID=D2R538_9PLAN
          Length = 212

 Score =  114 bits (286), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 69/110 (62%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
            ++ +    +    A   F+       SG    ++L+ D+ + L +ELGRT M ++++L+
Sbjct: 101 ASVDQPVDPAIAGIAPFAFRDLAAAPPSGEKATLELLRDVDLDLRIELGRTEMFLEDVLK 160

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           L +GSVV LD LAG+P+DI +NG LIA+GEV+V+ D + VR+ ++++  +
Sbjct: 161 LRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVLNDNFCVRVAELLSGDD 210


>UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobiluncus mulieris
           RepID=D0YPX2_9ACTO
          Length = 254

 Score =  113 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 64/107 (59%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
                 +A T              + + L+ D+ + LT E+GRT++ + ++L L+ GSV+
Sbjct: 147 PKKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 206

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
            LD  AG   D+++NG LIA GE+VVV ++YG+RIT+I++ +E+  R
Sbjct: 207 ELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNR 253


>UniRef50_A8RWA3 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=A8RWA3_9CLOT
          Length = 320

 Score =  113 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDI----DL 56
           M+DM  P  +  G    + A  +   +   + +  E  F +F    +    + I      
Sbjct: 189 MADM--PCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKK 246

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DI + ++V LG T  ++K++L L +G ++ LD  AG P D+++NG LI +G+V+V  D
Sbjct: 247 LLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306

Query: 117 KYGVRITDIITPSE 130
           ++G RI +++   E
Sbjct: 307 RFGARIIEVVGKRE 320


>UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Planctomyces
           limnophilus DSM 3776 RepID=C1ZEF0_PLALI
          Length = 193

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 16/143 (11%)

Query: 3   DMNNPADDNNGAMDDL------WAEALSEQKST-------SSKSAAETVFQQFGG---GD 46
             + PA  N  A   L       A ALSE+            ++ A   F++FG      
Sbjct: 50  QAHQPASRNTSAEQSLRQAEQQLAAALSEELPPRNMRGLPPGEAPARFEFEEFGTPFPTR 109

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
            +  +  +D + D+ + + +ELGRT + I E+++L +G+VV LD LAG+P+DIL+NG L+
Sbjct: 110 AAAPVFPLDALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLL 169

Query: 107 AQGEVVVVADKYGVRITDIITPS 129
           A+GEV+V+ D + VRI +I+T  
Sbjct: 170 ARGEVLVLNDNFCVRIAEILTQD 192


>UniRef50_A8RWD0 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=A8RWD0_9CLOT
          Length = 368

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 60/80 (75%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           ++ LIMD+P+ ++VE+G+TR  +K++L  + G+VV LD  +  P+DI++NG LIA+GEVV
Sbjct: 285 NLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVV 344

Query: 113 VVADKYGVRITDIITPSERM 132
           V+ D +GVRI++I+     +
Sbjct: 345 VIDDNFGVRISEIVNTRSII 364


>UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitratiruptor sp.
           SB155-2 RepID=A6Q2L3_NITSB
          Length = 133

 Score =  113 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MS+  NP+ +   + +      LS  +  + + A E+ +      +         +++D+
Sbjct: 1   MSEETNPSPEEQNSEEQP---ELSPDELMAQQFAQES-YGSETEEEDRIEKSKFSILLDV 56

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+ + VE+G T+M ++E+L+L   SVV L+    EP+D+ +NG +IA+GE+  V + +G+
Sbjct: 57  PLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGL 116

Query: 121 RITDIITPSERMRRLS 136
           +IT ++TP ER++ L 
Sbjct: 117 KITHVVTPEERLKILE 132


>UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sanguibacter keddieii
           DSM 10542 RepID=D1BCL8_SANKS
          Length = 247

 Score =  113 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 61/97 (62%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
                    G    +    ++ L+ D+ + L+ E+GR ++ ++++L L  G+V+ LD +A
Sbjct: 148 VPAAQAGAAGTSKGASVGDNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVA 207

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           G P D+++NG LIA+GEVVV+ + YG+RIT+I+  +E
Sbjct: 208 GSPADLMVNGRLIARGEVVVIDEDYGLRITEIVDLAE 244


>UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LT68_ACIC1
          Length = 123

 Score =  113 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           LS     SS+ A             +     ++L+ ++ + +T ELGRTRMT++ELL L 
Sbjct: 11  LSALVGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTRMTVRELLSLA 70

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP-SER 131
            G VV L+  AG P+D+ +NG LIA+GEVVV+ +++GVRI++I+ P SER
Sbjct: 71  PGMVVELNRAAGSPIDLYVNGTLIARGEVVVIDEEFGVRISEIVGPDSER 120


>UniRef50_C0GJF1 Flagellar motor switch protein FliN n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJF1_9FIRM
          Length = 141

 Score =  112 bits (281), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 3/128 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
               +   +    E LS Q     +           G        +++ I+DIP++++V 
Sbjct: 16  TQVPSETEETPVVEDLSFQAKEMPQPKKNKPRAANAGMQSHP---NLERILDIPLRVSVS 72

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LG+T   I +++ L  G++V  D   GEP+DI +NG LIA+GEVVVV + +GVRI+ IIT
Sbjct: 73  LGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVVGEHFGVRISQIIT 132

Query: 128 PSERMRRL 135
           P +R+  +
Sbjct: 133 PQQRIENM 140


>UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Candidatus Solibacter
           usitatus Ellin6076 RepID=Q01PP4_SOLUE
          Length = 282

 Score =  112 bits (281), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 66/112 (58%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
              +   ++A E    +      +     ++L++D+ + +++  G+T + +K++L+LT G
Sbjct: 171 SPAAGQPEAAPEDAGGEPHTVKRNDMPPTMELLLDVELPVSISFGKTEILMKDVLKLTTG 230

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           S+V L+    EP+++L+N  LIA+GEVVVV   YGVRI  I+   +R+R + 
Sbjct: 231 SIVELNRGVNEPVEVLVNHCLIARGEVVVVEGNYGVRIQQIVNRQDRLRSIR 282


>UniRef50_Q1Q6T3 Strong similar to flagellar motor switch protein FliN n=1
           Tax=Candidatus Kuenenia stuttgartiensis
           RepID=Q1Q6T3_9BACT
          Length = 120

 Score =  112 bits (280), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 75/111 (67%)

Query: 26  QKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           Q +  S   ++ + ++         + ++DLI+D+ V ++VELGR  M IK++L L+QGS
Sbjct: 10  QPTIESVEFSQLIPEEMDSQKGGEGMPNLDLILDVTVPVSVELGRANMLIKDILALSQGS 69

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +V L+ +AG P+++L+ G L+A+GEVVVV +++G++IT I  P +R+R L 
Sbjct: 70  IVELEKVAGTPVELLVRGKLLARGEVVVVEERFGLKITAICGPQDRVRNLG 120


>UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MGA9_RHOM4
          Length = 293

 Score =  111 bits (278), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 34  AAETVFQQFGGGDVS--GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
                F + G   +   G   +++L+ D+ +++ VELGR R+ + ++LRLT GS++ L+ 
Sbjct: 188 VRPASFGELGPERIGDGGVKGNLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEK 247

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           L GEPL+I  NG LIA+GE VV+ +++GVRIT ++T S +  +
Sbjct: 248 LVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLVTGSRQREK 290


>UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding protein n=20
           Tax=Campylobacter RepID=A7GZX6_CAMC5
          Length = 286

 Score =  111 bits (278), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
            D       +      SE +S     A      +F        +++I+LIMD+ + + V 
Sbjct: 162 CDHTLMKFFEPTKVGESESQSGDQAKATHGSRSEFSA----EEMRNINLIMDVRLPIRVR 217

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           +G  RM +K++L +  GSV+ L+ LA +PL+ILI   +IA GEVV++   +G++IT I +
Sbjct: 218 IGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQIGS 277

Query: 128 PSERMRRLS 136
             ER+++L 
Sbjct: 278 KRERLQQLK 286


>UniRef50_Q7ULU7 Flagellar motor switch protein fliN n=1 Tax=Rhodopirellula baltica
           RepID=Q7ULU7_RHOBA
          Length = 141

 Score =  111 bits (278), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 70/110 (63%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
           A A  +++ST                 +     D+DL+ ++ + L +ELGRT+M ++E+L
Sbjct: 31  AAATGDKESTERDVPRPFALGDLSPNSLGEAAHDVDLLGEVEMDLRIELGRTQMRLEEVL 90

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           RL  GSVVALD LAG+P+DI +NG LIA+GEV+V+ D + VR+T+++  S
Sbjct: 91  RLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMNDNFCVRVTELVGAS 140


>UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arthrobacter
           chlorophenolicus A6 RepID=B8HEJ4_ARTCA
          Length = 238

 Score =  111 bits (277), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 59/91 (64%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
           G  + +     + LI ++ + LTVE+GRTRM++++ L L  G V+ LD  AG P D+L+N
Sbjct: 148 GAHNDASVPARLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLN 207

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMR 133
           G LIA GEVVVV   Y VRIT I+  +E +R
Sbjct: 208 GRLIAHGEVVVVDQDYAVRITRILDTAEGLR 238


>UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobiluncus curtisii
           ATCC 43063 RepID=C2BUL2_9ACTO
          Length = 250

 Score =  111 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 62/92 (67%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                    + + L+ D+ + LT E+GRT++ + ++L L+ GSV+ LD  AG   D+++N
Sbjct: 156 STATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVN 215

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           G LIA+GE+VVV ++YG+RIT+I++ +++  +
Sbjct: 216 GRLIARGEIVVVDEEYGIRITEIVSLADQQNQ 247


>UniRef50_A9HHD1 Flagellar motor switch protein FliN n=2 Tax=Rhodospirillales
           RepID=A9HHD1_GLUDA
          Length = 125

 Score =  111 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
            +D    ++D  + A S   +    SA     +Q   GD SG    ++ + DIPVK+T  
Sbjct: 3   TNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQ-KNGDGSGQ---MEAVYDIPVKITAV 58

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-KYGVRITDII 126
           +G   M + +LL+L +G+VV LD   GE +DI  N  LIA+GEVVVV D   GV +T+II
Sbjct: 59  IGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEII 118

Query: 127 TPS 129
           + +
Sbjct: 119 SSA 121


>UniRef50_A4A5Y8 Flagellar motor switch protein fliN n=3 Tax=unclassified
           Gammaproteobacteria RepID=A4A5Y8_9GAMM
          Length = 117

 Score =  111 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/116 (40%), Positives = 76/116 (65%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
                  + +++   E           +G   D+DL+MD+ V L+VE+GRT++ IK+LL 
Sbjct: 2   SDEQATDAVAAEPPEELQSTAPPAAASAGGKIDLDLLMDVQVTLSVEIGRTKLPIKDLLA 61

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L QGS+V+LD    EPLD+++NG LIA+GEVV  A ++G+R+ D+++PSER+++L 
Sbjct: 62  LNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAGQFGLRLIDVVSPSERLKKLK 117


>UniRef50_Q2RZE3 Possible flagellar motor switch FliN n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2RZE3_SALRD
          Length = 250

 Score =  111 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSS-KSAAETVFQQFGGGDVSGTLQD--IDLIMDIPVKL 64
           AD ++GA       A S     S     +   F + G  ++SG        L+ D+ +++
Sbjct: 119 ADQSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEV 178

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            VELGR  + + ++L+LT GSVV L+ + GEPL +  NG LIA+GE VV+ +++GVRIT+
Sbjct: 179 RVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQFGVRITN 238

Query: 125 IITPSERMRRL 135
           + +   R +  
Sbjct: 239 LASEGHREKAF 249


>UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacterales bacterium GD
           1 RepID=B6BN04_9PROT
          Length = 288

 Score =  111 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 62/88 (70%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
             + +I LIMD+ + + V +G+ +M +K++L +  GSV+ L+ LA +PLDIL++ ++IAQ
Sbjct: 200 EEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQ 259

Query: 109 GEVVVVADKYGVRITDIITPSERMRRLS 136
           GEVV+V   +GV+IT I +  ER+ +L 
Sbjct: 260 GEVVIVDGNFGVQITSIGSKRERLTQLK 287


>UniRef50_Q4JMS2 Predicted flagellar motor switch protein n=3 Tax=Bacteria
           RepID=Q4JMS2_9BACT
          Length = 110

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/113 (41%), Positives = 78/113 (69%), Gaps = 3/113 (2%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +SE+   +  +A ET+  +        + +++ L+ +I V LTVE+G+  + I++LLRL 
Sbjct: 1   MSEETELAEDAATETMDAE---TAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLN 57

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +GSV+ LD LAG+PLDIL NG +IA+GEVV+V +++G+R T+I+ P+ RM  +
Sbjct: 58  EGSVIELDRLAGDPLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARMESV 110


>UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XES1_9HELI
          Length = 283

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 64/105 (60%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           K+ A T             +++I +++DI + + V +G+ RM +K+++ +  GSVV L+ 
Sbjct: 178 KAPASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQ 237

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           LA +PL+IL+N  +I +GEVVVV   + ++IT+I T  ER+  L 
Sbjct: 238 LASDPLEILVNDKIIGKGEVVVVDGNFAIQITEIGTKKERLESLR 282


>UniRef50_Q04RL4 Endoflagellar motor switch protein n=6 Tax=Leptospira
           RepID=Q04RL4_LEPBJ
          Length = 174

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 63/101 (62%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
            S   +  +       S    +++L+MD+ + LTVELGRT M IK++  L +G VV LD 
Sbjct: 74  PSPTPSAPRSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDK 133

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
             GE LDIL NG+L+ +G++V + D YG++IT+I+  S R+
Sbjct: 134 NVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL 174


>UniRef50_A0LDK9 Flagellar motor switch protein FliN n=1 Tax=Magnetococcus sp. MC-1
           RepID=A0LDK9_MAGSM
          Length = 137

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 69/102 (67%), Gaps = 3/102 (2%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           AE  F     GD+    ++++L+MD+P++++V LG     IK+LLRL +GS+V L+  A 
Sbjct: 39  AENPFDVSTDGDLP---KNLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVELEKEAD 95

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +PL+I +N  L+A GEVV++ DK G+RITDI++  ER+  L 
Sbjct: 96  DPLEIYVNDRLLAYGEVVMIKDKLGIRITDIVSLKERLENLR 137


>UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Actinosynnema mirum DSM
           43827 RepID=C6WJP8_ACTMD
          Length = 250

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 61/77 (79%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L+  + +++T ELGRTR+T++ELL L+ G+V+ LD  AG P D+L+NG LIA+GEVVV
Sbjct: 168 LELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVV 227

Query: 114 VADKYGVRITDIITPSE 130
           + + +G+R+T+II P +
Sbjct: 228 IDENFGIRVTEIIKPGD 244


>UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas denitrificans DSM
           1251 RepID=Q30SP4_SULDN
          Length = 283

 Score =  109 bits (272), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 67/114 (58%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
             + K+       E+          S  + +I LIMD+ + + V +G+ +M +K++L + 
Sbjct: 169 FQKDKTLGDDRKNESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMD 228

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            GSV+ L+ LA +PLDIL++  +IA+GEVV+V   +GV+IT I T  ER+ +L 
Sbjct: 229 IGSVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITSIGTKRERLNQLK 282


>UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 Tax=Conexibacter woesei DSM
           14684 RepID=UPI0001C312B0
          Length = 130

 Score =  109 bits (272), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 60/94 (63%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
                       D+  + D+PV+L VE+GRTRMT+ E L L  GS+V L+ +AGEP+D+L
Sbjct: 13  PTAANGSHTGQNDLGRLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLL 72

Query: 101 INGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           +NG  IA GEVVV+ +++G+RITD++      + 
Sbjct: 73  VNGTPIAHGEVVVIDEEFGLRITDVLGAPAGEQN 106


>UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKD7_MOOTA
          Length = 124

 Score =  108 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 64/117 (54%)

Query: 14  AMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRM 73
             +++     + +         +  F         G   D   I D+P++L  ELGRTRM
Sbjct: 4   TEEEIQKLLQAMEAGEDQPRVEKARFAPLQPAPAPGVTADFKRIADVPLRLKAELGRTRM 63

Query: 74  TIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           T+KE+L L  GSV+ LD LAGEP+D+L+N   +A+GEVVV+ D +GVRI  +    E
Sbjct: 64  TVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVINDAFGVRINSLAAVEE 120


>UniRef50_C1F999 Putative flagellar motor switch protein FliN n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F999_ACIC5
          Length = 248

 Score =  108 bits (271), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 22  ALSEQKSTSSKSAAETVFQQFGGGDVSGTLQ---DIDLIMDIPVKLTVELGRTRMTIKEL 78
            LSE+ + + ++AA       G    + +     ++DL++DI V  ++  G   + I+EL
Sbjct: 128 ELSEKAAKAPETAARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIREL 187

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L    G V+ LD    +P+D+++   ++A+GEVV+V   +G+R+T++  P + +  + 
Sbjct: 188 LETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVNGNFGLRVTEVAEPKKCLESVR 245


>UniRef50_B9KJD9 Flagellar switch protein n=5 Tax=Rhodobacter sphaeroides
           RepID=B9KJD9_RHOSK
          Length = 98

 Score =  108 bits (271), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 67/85 (78%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
            +++ L+ +I V+LTVE+GRT MTI++LLRL++GSVV LD LAG+PLD+L+NG  IA+GE
Sbjct: 14  AENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGE 73

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VV+V +++G+R   II P +R   L
Sbjct: 74  VVMVGERFGIRFGQIIEPEKRAESL 98


>UniRef50_C0QPC5 Flagellar motor switch protein FliN n=2 Tax=Aquificales
           RepID=C0QPC5_PERMH
          Length = 190

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 63/92 (68%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
                 + +DL+MDIP++++VE+G T + ++E+L+L   ++V LD    +P+D+ +NG L
Sbjct: 96  PAGLEQEKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKL 155

Query: 106 IAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           IA+GE+  V D +G++IT IIT  ERM+ L+ 
Sbjct: 156 IAKGELYTVEDHFGIKITSIITVQERMKLLTE 187


>UniRef50_C2KZ02 Possible flagellar motor switch protein FliY n=1 Tax=Oribacterium
           sinus F0268 RepID=C2KZ02_9FIRM
          Length = 472

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFG--GGDVSGTLQDIDLIM 58
           ++ M          + D+      E KS+          ++F   GG       + +++M
Sbjct: 336 LNQMQQSQTQMLELIRDIQGGKNKEAKSSEPSLIKPLNSREFENEGGGAGENPDNREMLM 395

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
            +P++++VE+GRTR  +K++L  TQGS+V LD +AGE  D+ +NG  IA+G++VVV + +
Sbjct: 396 KVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDIVVVEENF 455

Query: 119 GVRITDIITPSERMRRL 135
           G+RIT+I+        L
Sbjct: 456 GIRITEILKKDINQESL 472


>UniRef50_D2S982 Flagellar motor switch protein FliN n=1 Tax=Geodermatophilus
           obscurus DSM 43160 RepID=D2S982_9ACTO
          Length = 249

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 58/87 (66%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
           Q            +DL+  + +++TVE+GRTRMT+ ELL L  G VV LD  A  P D+L
Sbjct: 151 QVTLPQARTQRGSLDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLL 210

Query: 101 INGYLIAQGEVVVVADKYGVRITDIIT 127
           +NG LIA+GEVVVV + +G+RI++I+T
Sbjct: 211 VNGTLIARGEVVVVDEDFGLRISEIVT 237


>UniRef50_Q44903 Flagellar motor switch protein fliN n=21 Tax=Spirochaetales
           RepID=FLIN_BORBU
          Length = 113

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 62/77 (80%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
              +  L+MD+ ++LTVELGRT   IK++L +++G+++ LD LAGEP+DIL+NG ++A+G
Sbjct: 32  DPSNFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKG 91

Query: 110 EVVVVADKYGVRITDII 126
           EVVV+ + +GVRIT+II
Sbjct: 92  EVVVIDENFGVRITEII 108


>UniRef50_A1QZ73 Flagellar motor switch protein FliN n=7 Tax=Spirochaetaceae
           RepID=A1QZ73_BORT9
          Length = 114

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 62/77 (80%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
              +  L+MD+ +++TVELGRT   IK++L +++G+++ LD LAGEP+DIL+NG +IA+G
Sbjct: 33  DPSNFGLLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKG 92

Query: 110 EVVVVADKYGVRITDII 126
           EVVV+ + +GVRIT+II
Sbjct: 93  EVVVIDENFGVRITEII 109


>UniRef50_C0C1N9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C1N9_9CLOT
          Length = 460

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQ---QFGGGDVSGTLQDIDLI 57
           M+ M +              +    Q +   K     V Q   +    +      +++LI
Sbjct: 324 MTQMMDLMRQQLEMQQVQLQQMKQTQAAGPKKIKVNPVSQPNLEQSAEETELQESNLELI 383

Query: 58  MDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADK 117
           M +P++++VE+GRT+  +K++L L +GS+V LD LAGE +D+ +NG  IAQG+VVVV D 
Sbjct: 384 MGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDKLAGEQVDLFVNGQCIAQGDVVVVDDN 443

Query: 118 YGVRITDII 126
           +G+RIT+I+
Sbjct: 444 FGIRITEIL 452


>UniRef50_Q89AZ3 Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola
           (Baizongia pistaciae) RepID=FLIN_BUCBP
          Length = 134

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 3/112 (2%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           +D+      E K   SK+  +         D+S     +  IMD+PV LT+E+G  ++TI
Sbjct: 19  EDIKKSCEIEDKIFHSKTVNDVDLNLNSKNDIS---SKMKFIMDVPVHLTIEVGTVKITI 75

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           K+LL L   S++ LD  AG+PL+IL+NGY+IA GE+VV  +KYG+RI +II 
Sbjct: 76  KDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTENKYGIRIINIID 127


>UniRef50_C7M222 Flagellar motor switch protein FliN n=1 Tax=Acidimicrobium
           ferrooxidans DSM 10331 RepID=C7M222_ACIFD
          Length = 95

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 62/86 (72%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
            +V  T  ++ ++ ++ ++L+VELGR RM ++ LL LT G V+ LD  A  P+D+L+NG 
Sbjct: 2   PEVPETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGT 61

Query: 105 LIAQGEVVVVADKYGVRITDIITPSE 130
           L+A+GEVVVV D++GVRI +II+  E
Sbjct: 62  LVAKGEVVVVDDEFGVRILEIISSDE 87


>UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundicola AmH
           RepID=B9L5V0_NAUPA
          Length = 270

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 66/108 (61%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           +  + +E         ++ G ++++++++DI ++L V +G   M +K+++ +  GS+V L
Sbjct: 163 NPSTKSEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVEL 222

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           + LA EPLDILI    I +GEVV+V   +G++IT I +  ER+  L +
Sbjct: 223 NQLAKEPLDILIEDKKIGEGEVVIVDGNFGIQITSIGSREERLNSLKK 270


>UniRef50_Q07SI0 Flagellar motor switch protein FliN n=7 Tax=Alphaproteobacteria
           RepID=Q07SI0_RHOP5
          Length = 132

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 74/128 (57%), Gaps = 14/128 (10%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           +D++N A ++        A +  +    ++++A ET             L +++ I+ IP
Sbjct: 7   TDLSNAAAEHASEPFKPEAASFGKLADLAARAAEET-----------SRLTNLEPILRIP 55

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KY 118
           V + V LG   M + +L++L +G+V+ LD   GEP+++++NG ++A+G VVVV D   ++
Sbjct: 56  VTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRF 115

Query: 119 GVRITDII 126
           GV +T+I+
Sbjct: 116 GVSLTEIV 123


>UniRef50_Q1GNY9 Flagellar motor switch FliN n=2 Tax=Sphingomonadaceae
           RepID=Q1GNY9_SPHAL
          Length = 111

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 57/89 (64%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
               + DL+  + ++++VE+G T MT+ ELL L +GSV+ LD  A + LDI  NG LIA+
Sbjct: 21  AAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAK 80

Query: 109 GEVVVVADKYGVRITDIITPSERMRRLSR 137
           GE+V V  +YG+++ +++ P+  +    R
Sbjct: 81  GEIVSVDGRYGIQVAEVVAPARGLEGFER 109


>UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campylobacterales
           RepID=Q17WT1_HELAH
          Length = 283

 Score =  104 bits (261), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 70/116 (60%), Gaps = 2/116 (1%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
           E   E     +K   E   Q     ++   +++I +++D+ + + V +G+ +M +K+++ 
Sbjct: 169 ETKKEHNEEGTKVVREDKIQDASLENI--EIRNISMLLDVKLNVKVRIGQKKMILKDVVS 226

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +  GSVV LD L  +PL+IL++  +IA+GEVV+V   +G++ITDI T  ER+ +L 
Sbjct: 227 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDIGTKKERLEQLK 282


>UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Helicobacter pylori
           RepID=B2USQ1_HELPS
          Length = 288

 Score =  104 bits (261), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 62/88 (70%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
            +++I +++D+ + + V +G+ +M +K+++ +  GSVV LD L  +PL+IL++  +IA+G
Sbjct: 201 EIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKG 260

Query: 110 EVVVVADKYGVRITDIITPSERMRRLSR 137
           EVV+V   +G++ITDI T  ER+ +L  
Sbjct: 261 EVVIVDGNFGIQITDIGTKKERLEQLKH 288


>UniRef50_C1A552 Flagellar motor switch protein FliN n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A552_GEMAT
          Length = 141

 Score =  104 bits (260), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 67/106 (63%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
            +L E+   ++  A       F    +  T   I +++D+ + +++ELGRT MT++E+LR
Sbjct: 24  SSLKEETVAAAPQARAPQLTDFEQTMLGTTEVPIGMLLDLTLPVSIELGRTSMTVQEILR 83

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           L +GSV+ LD LAGEP+DI +     A+GEVVV+ + +GVRIT ++
Sbjct: 84  LGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGEHFGVRITRVL 129


>UniRef50_A5V6A7 Flagellar motor switch protein FliN n=4 Tax=Sphingomonadaceae
           RepID=A5V6A7_SPHWW
          Length = 107

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 60/94 (63%)

Query: 44  GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
           G        ++ L+ DIP++L+VE+G T + + EL+ L  GSVV LD  A E LDI++NG
Sbjct: 12  GAAELAGRDNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNG 71

Query: 104 YLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
            L+A+GEVV V  K+G+R+ DI+    R+  + R
Sbjct: 72  TLVAKGEVVTVNGKFGIRVVDIVAADARLPGIER 105


>UniRef50_B1I5E1 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I5E1_DESAP
          Length = 127

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 63/109 (57%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
             L  +   + K      F+Q G   + G    ++ + D+ V ++ ELG+T MT++E L 
Sbjct: 11  SGLDREPGPTVKKVQFPRFEQAGTPGMPGVRISLEYLDDVEVDVSAELGQTAMTVREFLS 70

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           L +GSV+ LD  AGE +D+++NG  +A+GEV+V+ D + +RI  I  P 
Sbjct: 71  LHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVINDLFVLRIHSIAHPQ 119


>UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UW94_9AQUI
          Length = 164

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 34  AAETVFQQFGGGD---VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
            AE   Q+             + +D +MDIP+ + V +G T + I+EL+ L  GSV+ LD
Sbjct: 51  PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
               EP+DI +NG LIA+GE+VVV +K+GVRIT+I +   +
Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERK 151


>UniRef50_B1LV08 Flagellar motor switch protein FliN n=1 Tax=Methylobacterium
           radiotolerans JCM 2831 RepID=B1LV08_METRJ
          Length = 110

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 53/84 (63%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                  T  D++ + D+PV ++  LG  RM I +LLRL  G+V+ LD   GE +D+ +N
Sbjct: 24  DAPTTPKTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVN 83

Query: 103 GYLIAQGEVVVVADKYGVRITDII 126
             L+A+GEVV+V D+ GV +T+I+
Sbjct: 84  NRLVARGEVVLVEDRLGVTMTEIV 107


>UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulfurospirillum
           deleyianum DSM 6946 RepID=D1B0L6_SULD5
          Length = 286

 Score =  104 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDV--SGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
           E +    +         + +            + +I+LI D+ + + V +G  +M +K++
Sbjct: 169 EDMPRMDTPKESIPESALIEPKKVVPSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDV 228

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L +  GSV+ LD LA +PL+IL+   +IA GEVV+V   +GV+I +I T  ER+ +L 
Sbjct: 229 LSMDIGSVIELDQLANDPLEILVGDKVIAMGEVVIVDGNFGVQIGEIGTKRERLEKLR 286


>UniRef50_Q2WA21 Flagellar motor switch/type III secretory pathway protein n=6
           Tax=Rhodospirillales RepID=Q2WA21_MAGSA
          Length = 108

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 58/82 (70%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
            D+  + +D++ + DIPV+++  LG+  M + +LL+L +G+VV LD   GE +DI +N  
Sbjct: 22  PDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNR 81

Query: 105 LIAQGEVVVVADKYGVRITDII 126
           L+A+GEVVVV D+ GV +T+II
Sbjct: 82  LVARGEVVVVEDRLGVTMTEII 103


>UniRef50_A1UTV7 Flagellar motor switch protein fliY n=35 Tax=Rhizobiales
           RepID=A1UTV7_BARBK
          Length = 139

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 3/89 (3%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
              + +    + +L+M IPV++ + LG T M +  L+ L +GSV+ L+   G+P+DI++N
Sbjct: 51  TQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDIVVN 110

Query: 103 GYLIAQGEVVVVAD---KYGVRITDIITP 128
           G +IA+GEV+V+ D   ++GV +T++I  
Sbjct: 111 GRIIARGEVIVLEDDSSRFGVSLTEVIDK 139


>UniRef50_B9JRN7 Flagellar motor switch protein FliN n=2 Tax=Rhizobiales
           RepID=B9JRN7_AGRVS
          Length = 220

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 44  GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
               S    ++DLIMDIP+ + + LG +RM +  L+ L +G+++ALD   GEP++I++NG
Sbjct: 130 QAPGSALDSNLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNG 189

Query: 104 YLIAQGEVVVVAD---KYGVRITDIITPS 129
             IA+GE+ V+ +   ++GV++ ++++  
Sbjct: 190 RRIARGEITVLENDDTRFGVKLIEVMSTK 218


>UniRef50_B1ZL53 Flagellar motor switch protein FliN n=6 Tax=Rhizobiales
           RepID=B1ZL53_METPB
          Length = 108

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 3/101 (2%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
            S+        G     G  +++D I+ IPV + V LG   M + +L++L +G+VV LD 
Sbjct: 2   SSSPFPETDLAGNEPRVGDGRNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDH 61

Query: 92  LAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITPS 129
             GEP+D+++NG +IA+GE+V+V +   ++GV +T+++ PS
Sbjct: 62  RVGEPVDVMVNGRVIARGEIVIVEEDNSRFGVSLTEVVGPS 102


>UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibacter mediatlanticus
           TB-2 RepID=A6DBQ2_9PROT
          Length = 269

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 59/99 (59%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
             +            +D++MD+ ++L V +G+  M +K+++ +  GS+V LD LA EPLD
Sbjct: 170 ISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLD 229

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           ILI    I +GEVV+V   +G++IT I + ++R+  + +
Sbjct: 230 ILIEDKKIGEGEVVIVDGNFGIQITSIGSKADRLNSMKK 268


>UniRef50_Q03593 Flagellar motor switch protein fliN n=21 Tax=Alphaproteobacteria
           RepID=FLIN_CAUCR
          Length = 110

 Score =  103 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 54/77 (70%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
           T  D+  + D+PV ++  LGR  M++ +LL+L QGS++ LD   GE +DI +N  L+A+G
Sbjct: 28  TAADLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARG 87

Query: 110 EVVVVADKYGVRITDII 126
           EVVVV ++ GV +T+II
Sbjct: 88  EVVVVDERLGVTMTEII 104


>UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF0_9FIRM
          Length = 541

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQ--DIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           E       +  +   Q+          +   +DLI DIPV++T  LGR ++ +KEL+   
Sbjct: 432 EDVEPVMSTEPQDWLQESSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAK 491

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
            GSVV L   A  P+DIL NG L+A+GEVV   +++G++IT+I+   +R
Sbjct: 492 AGSVVELSCPADAPVDILANGKLVARGEVVHYNERFGIKITEIMQDWKR 540


>UniRef50_C6NYG7 Flagellar motor switch protein FliN n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NYG7_9GAMM
          Length = 120

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 7/114 (6%)

Query: 28  STSSKSAAETVFQQFGGGDVS------GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRL 81
            ++  +      + F   D +           +DL++++P++++VELGRTRM  K +L+L
Sbjct: 3   DSTDDATNPLPIEHFDSSDETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQL 62

Query: 82  TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA-DKYGVRITDIITPSERMRR 134
           +QGSV+ L+   GEPL I ING + A GE V+V  +++GVR+T ++   + ++ 
Sbjct: 63  SQGSVIELNRAVGEPLTIYINGEIFAYGEAVLVNQERFGVRLTALVNKEDLIQN 116


>UniRef50_Q0EZ61 Flagellar protein n=1 Tax=Mariprofundus ferrooxydans PV-1
           RepID=Q0EZ61_9PROT
          Length = 98

 Score =  101 bits (253), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 56/97 (57%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
                        +++ IM +P++++VELGR ++ +  + RL +G V+ ++  A   + I
Sbjct: 2   SDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQI 61

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L NG + A+GEVV   DK GVRIT+I+  S R+  LS
Sbjct: 62  LANGSIFAKGEVVSTGDKLGVRITEIVPASARISSLS 98


>UniRef50_A4SI07 Lateral flagellar motor switch protein, lfiN n=2 Tax=Aeromonas
           RepID=A4SI07_AERS4
          Length = 125

 Score =  101 bits (252), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 13/124 (10%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           MN+P D +   +D L+ + +S   +    +              S   +D+     IPVK
Sbjct: 6   MNDPLDLDG--LDQLFGDDISMPSAADYMAPTS-----------SSKQRDLSFFRQIPVK 52

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +T+E+  T +++ EL+R+ +G+V+ LD LAGE LD+ +NG L+A+GEVVVV  KYG+R+ 
Sbjct: 53  VTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGKYGLRLV 112

Query: 124 DIIT 127
           D+I 
Sbjct: 113 DVID 116


>UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6CER1_9PLAN
          Length = 226

 Score =  101 bits (252), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 58/82 (70%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
                 +  + ++ + L +ELGRT + I+E+L++ +G VV LD LAG+P+DIL+NG +IA
Sbjct: 144 PEEAMKLSSLQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIA 203

Query: 108 QGEVVVVADKYGVRITDIITPS 129
           +GEV+V+ D + VR+ +II+P 
Sbjct: 204 RGEVLVLNDNFCVRVAEIISPE 225


>UniRef50_D0I457 Flagellar motor switch protein FliN n=2 Tax=Vibrionaceae
           RepID=D0I457_VIBHO
          Length = 116

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 59/96 (61%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
                    +  D+  I +IPV LT+E+  T + + +L+ +  GSV+ LD L+GEP+D+ 
Sbjct: 20  PSSDAPAPVSSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVR 79

Query: 101 INGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +NG L+   EVVVV +KYG+R+ +++   + +R L+
Sbjct: 80  VNGTLLGHAEVVVVNNKYGLRLVNVVDEKDMLRGLA 115


>UniRef50_B6QZA8 Flagellar motor switch protein n=1 Tax=Pseudovibrio sp. JE062
           RepID=B6QZA8_9RHOB
          Length = 111

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           +S       + GGG V    +D++ + D+PV+L   LG T+M + +LL L  G V+ LD 
Sbjct: 14  QSTQRAGTDEDGGGGVKAA-EDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDR 72

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
             GE +D+ +N  LIA+GEVV+V DK GV +T+II   +
Sbjct: 73  KVGEAIDVYVNNRLIARGEVVLVEDKLGVTMTEIIKADK 111


>UniRef50_A5FYJ9 Flagellar motor switch protein FliN n=17 Tax=Alphaproteobacteria
           RepID=A5FYJ9_ACICJ
          Length = 132

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
            G +     +D++ + D+PV ++  LGR+ M + +LL+L +G+VV LD  AG+P+DI +N
Sbjct: 42  DGPETQRPSRDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVN 101

Query: 103 GYLIAQGEVVVVAD-KYGVRITDII 126
             LIA+GEVV++ + K G+ +T+I+
Sbjct: 102 NRLIARGEVVMLDETKLGITMTEIV 126


>UniRef50_Q57259 Flagellar motor switch protein fliN n=2 Tax=Rhizobium/Agrobacterium
           group RepID=FLIN_AGRT5
          Length = 179

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 3/126 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
           + D     +DL A             AA            SG  +++++IMDIP+ + + 
Sbjct: 53  STDEVSTDNDLSAFGGGAADFAMDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIV 112

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITD 124
           LG +RM +  L+ L +G+ +ALD   GEP++I++NG  IA+GE+ V+ D   ++GV++ +
Sbjct: 113 LGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIE 172

Query: 125 IITPSE 130
           +++  +
Sbjct: 173 VLSTRK 178


>UniRef50_B6IW97 Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum
           SW RepID=B6IW97_RHOCS
          Length = 105

 Score = 98.4 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 57/91 (62%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                SG   + + I+ +PV+++V LGR RM I +LLRL    VV L+ + GEP+D+ +N
Sbjct: 6   SDAAESGETPERNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVN 65

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMR 133
             L+A+GE+VVV  + G+ I +++  + R R
Sbjct: 66  DRLVARGELVVVDGRLGLTIVELMPQASRGR 96


>UniRef50_A5P6I8 Flagellar motor switch protein n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P6I8_9SPHN
          Length = 96

 Score = 98.0 bits (243), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           LI DI V+LTVELGR  M ++++L L + SV+ LD L  EPLD+ +NG LIA+GEV+   
Sbjct: 10  LIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQG 69

Query: 116 DKYGVRITDIITPS 129
           +++ +R+ +I+  S
Sbjct: 70  NRFAIRVLEIVGAS 83


>UniRef50_B6R821 Flagellar motor switch protein FliN n=2 Tax=Rhodobacteraceae
           RepID=B6R821_9RHOB
          Length = 138

 Score = 97.6 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 8/134 (5%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTL-----QDIDLIM 58
           M++  + ++ A+   W  A SE +     +A     Q        G       +++D ++
Sbjct: 1   MSSSNEMSDEALALQWEAAASEAEMDMDMAAPAASAQPAASAPEKGVSDENVDRNLDAVL 60

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-- 116
            IPV + V LG   M +  LL+L +G+V+ LD   GEP+DI++NG  +A+GE+VVV D  
Sbjct: 61  GIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEIVVVEDDN 120

Query: 117 -KYGVRITDIITPS 129
            ++GV +T+I+   
Sbjct: 121 SRFGVSLTEIVGAK 134


>UniRef50_A6F9R7 Flagellar motor switch protein n=1 Tax=Moritella sp. PE36
           RepID=A6F9R7_9GAMM
          Length = 122

 Score = 97.2 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
                 +     +D+    +IP+ +T+E+  T++ I +L+ L+ G+V+ LD LA EPLD+
Sbjct: 27  SSLMTAENKPLKKDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDL 86

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIIT 127
            +NG L+A  EVVVV  KYGV++ D++ 
Sbjct: 87  KVNGQLLATAEVVVVNGKYGVKLIDVVD 114


>UniRef50_O54245 Flagellar motor switch protein fliN n=15 Tax=Rhizobiales
           RepID=FLIN_RHIME
          Length = 198

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 57/85 (67%), Gaps = 3/85 (3%)

Query: 44  GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
               SG   ++DLIMDIP+ + + LG +RM +  L+ LT+G+ +ALD   GEP++I++NG
Sbjct: 109 TAPGSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNG 168

Query: 104 YLIAQGEVVVVAD---KYGVRITDI 125
            +I +GE+ V+     ++GV++ +I
Sbjct: 169 RVIGRGEITVLEGDVTRFGVKLLEI 193


>UniRef50_A7K1M2 Flagellar motor switch protein FliN n=17 Tax=Vibrionaceae
           RepID=A7K1M2_VIBSE
          Length = 123

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 10/113 (8%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTL----------QDIDLIMDIPVKLTVELGRTR 72
           +SE   T++  A E  F  F   D               +D+     IPV +T+E+    
Sbjct: 1   MSEAPETNAFDAEELNFDDFQLEDFEAESTLQQEPATAERDLSFFKSIPVTVTLEVASKE 60

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           + + +L++  +G+V+ L+ L GEPLD+ +NG L+   EVVVV DKYG+R+ D+
Sbjct: 61  IPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLRLIDV 113


>UniRef50_B6IQ95 Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum
           SW RepID=B6IQ95_RHOCS
          Length = 119

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
              ++  I ++PV + V LGRT M + +LL+L +G+VV L+   GE +D+ +N  LIA+G
Sbjct: 35  DRDELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARG 94

Query: 110 EVVVVAD-KYGVRITDIITPS 129
           EVV+V D + GV +T+I+   
Sbjct: 95  EVVIVDDGRLGVTMTEIVKAE 115


>UniRef50_Q0G104 Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0G104_9RHIZ
          Length = 131

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 12/132 (9%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           M +P D +   ++      + E+               F G D      D+DL++D+ V 
Sbjct: 1   MIDPNDPHGSEIEHSGQPYMDEEGGEEDDRRP-----DFRGADKM----DLDLVLDVSVT 51

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV---ADKYGV 120
           + V LG  RM++ ELL+L +GS+V LD   G+P+D+++NG +IA+GE+VV+     ++GV
Sbjct: 52  MQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVLDQDDQQFGV 111

Query: 121 RITDIITPSERM 132
            +T++ TP  ++
Sbjct: 112 TLTEVATPGSKL 123


>UniRef50_B8EL08 Flagellar motor switch protein FliN n=2 Tax=Beijerinckiaceae
           RepID=B8EL08_METSB
          Length = 110

 Score = 96.5 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
           S +     ETV         +   ++++ I+ IPV + V LG   M +  LL+L +G+V+
Sbjct: 2   SDAQIEVNETVGGGEEPPGRANVSRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVI 61

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 128
            LD   GEP+D+++NG +IA+GE+VVV D   ++GV +T+I+ P
Sbjct: 62  PLDHRVGEPVDVVVNGRIIARGEIVVVEDDNSRFGVSLTEIVGP 105


>UniRef50_A4Y0Q2 Flagellar motor switch protein FliN n=1 Tax=Pseudomonas mendocina
           ymp RepID=A4Y0Q2_PSEMY
          Length = 123

 Score = 96.5 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 9/121 (7%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           M++P  DN+   D L  +A        S+  AE           S   QD+     IPV 
Sbjct: 1   MSSPISDNDF--DSLINDAGLNLDEPVSEPVAE-------QAPASLPQQDLSFFGKIPVN 51

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +T+E+  T +T+KEL+ +  GSV+ALD LAGEPLD+ +NG L A+ EVVV+   YG+RI 
Sbjct: 52  VTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNYGLRIV 111

Query: 124 D 124
           +
Sbjct: 112 E 112


>UniRef50_C8W1G7 Surface presentation of antigens (SPOA) protein n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W1G7_DESAS
          Length = 128

 Score = 96.5 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
            +   +  +  F     G        I  I D+PV +T ELG   +T++E+L L+ G ++
Sbjct: 15  KSEKTAVQKLRFTPLTPGGEQRIKTSIKHIEDVPVIVTAELGGAALTVREVLNLSPGMLI 74

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
            LD LAGE + + IN     +GEV+V+ D YG+RIT +  P
Sbjct: 75  KLDVLAGELVTMSINNQKFGRGEVMVINDNYGIRITSVFKP 115


>UniRef50_B1ZR34 Flagellar motor switch protein FliN n=3 Tax=Verrucomicrobia
           RepID=B1ZR34_OPITP
          Length = 84

 Score = 95.3 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 56/77 (72%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +D+++D+ VK+TV+LG  ++ ++E+L L+ GSVV L   A +P+ + +N  L+A GEVVV
Sbjct: 6   LDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVV 65

Query: 114 VADKYGVRITDIITPSE 130
           V D +G++IT+++   +
Sbjct: 66  VEDNFGIKITELVGSEK 82


>UniRef50_A1RF65 Flagellar motor switch protein FliN n=8 Tax=Shewanella
           RepID=A1RF65_SHESW
          Length = 128

 Score = 94.9 bits (235), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 55/79 (69%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
            S  L++ +    +PV++T+EL    M++ EL R+ +G V+ALD + GEPLDI +NG L+
Sbjct: 39  QSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALL 98

Query: 107 AQGEVVVVADKYGVRITDI 125
            +GEVV VA +YGVR+ +I
Sbjct: 99  GRGEVVEVAGRYGVRLLEI 117


>UniRef50_Q11LL6 Flagellar motor switch protein FliN n=3 Tax=Phyllobacteriaceae
           RepID=Q11LL6_MESSB
          Length = 121

 Score = 94.9 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
            +  T  K+  E           +   +    ++DIPV+L + LG   MT+ EL+ L +G
Sbjct: 11  SEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSELMALQRG 70

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDI 125
           S V+LD   GEP++I++NG LIA+GE+ ++ +   ++GVR+T+I
Sbjct: 71  STVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114


>UniRef50_A4THZ3 Flagellar switch protein n=26 Tax=Enterobacteriaceae
           RepID=A4THZ3_YERPP
          Length = 137

 Score = 94.5 bits (234), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVF--QQFGGGDVSGTLQDIDLIM 58
           M+D     +++      L   A+S  +   S   +  +    +          + + L  
Sbjct: 1   MTDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFS 60

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
            IPV LT+E+    + + ELL +   SV+ LD LAGEPLDI +NG +  Q EVVV+ +KY
Sbjct: 61  RIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKY 120

Query: 119 GVRITDIITPS 129
           G+RI +I + +
Sbjct: 121 GLRIININSQN 131


>UniRef50_C0GJH0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJH0_9FIRM
          Length = 150

 Score = 94.5 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
            D+ +                  E  +  ++      F +F         + ++    +P
Sbjct: 20  PDLADEVKQEKEGSQP----KQEEPPAAPAEEVERVEFPEFVQAPQGAKERGVNFFESVP 75

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V L +ELG   +T++E+L L + S++ LD LAGE   + +NG  +A GEVVV+ D +G R
Sbjct: 76  VTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDNFGFR 135

Query: 122 ITDIITPS 129
           + ++   S
Sbjct: 136 VAEVGGSS 143


>UniRef50_A7H064 Flagellar motor switch protein FliN n=8 Tax=Epsilonproteobacteria
           RepID=A7H064_CAMC5
          Length = 105

 Score = 94.5 bits (234), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           +  G  +  D +MDI V    ELG T ++I ELL+   GSV+ L+  AGE +++ IN  +
Sbjct: 11  EQLGLFKSYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRI 70

Query: 106 IAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
             +GEV+V      +RI +I+     ++   +
Sbjct: 71  FGKGEVMVYEKNLAIRINEILDSKSVIQYFKK 102


>UniRef50_A1T0L0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Psychromonas ingrahamii 37 RepID=A1T0L0_PSYIN
          Length = 120

 Score = 94.1 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 50/93 (53%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
                      +   + +  + DIPV +TVE+G   +T+KELL +   SV+ L    G+ 
Sbjct: 26  NDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKA 85

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           LDI +NG L A GEVVV    YGV+ITDI+   
Sbjct: 86  LDIKVNGKLFAYGEVVVANGHYGVKITDIVNKD 118


>UniRef50_C5JB71 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=uncultured bacterium RepID=C5JB71_9BACT
          Length = 117

 Score = 94.1 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 55/78 (70%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++ + ++PV++T  LG   + + ++L+L +G+VV LD + GEP+DI  N  LIA+GEVVV
Sbjct: 40  MEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVV 99

Query: 114 VADKYGVRITDIITPSER 131
           V D+  ++ITDII  + R
Sbjct: 100 VEDRLAIQITDIIRSNIR 117


>UniRef50_D1AZW0 Surface presentation of antigens (SPOA) protein n=3
           Tax=Campylobacteraceae RepID=D1AZW0_SULD5
          Length = 103

 Score = 94.1 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           L   + ++DI V    ELG T +TI+ LL+L +GSV+ L+  AGE +++ IN  +  +GE
Sbjct: 14  LSGFENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGE 73

Query: 111 VVVVADKYGVRITDIITPSERMRRLSR 137
           V+V      +RI +I+     ++   +
Sbjct: 74  VMVYEKNLAIRINEILDSKTVIQYFKK 100


>UniRef50_A5D0I4 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Pelotomaculum thermopropionicum SI
           RepID=A5D0I4_PELTS
          Length = 126

 Score = 93.8 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 5/111 (4%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQ-DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
            S+S     +  F           ++  +  + D+ ++++VELG+T M ++E+L L QGS
Sbjct: 14  ASSSDADIKKVQFPPLTPVKGMDRVKTSMSHLEDVQIEISVELGQTVMKVREVLGLEQGS 73

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           V+ LD   GE +++++N    A+GEVVV+ D +GVRIT I     R++ L 
Sbjct: 74  VIRLDKAIGEAVEVVLNEQRFARGEVVVINDSFGVRITSI----NRVQNLK 120


>UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein n=15
           Tax=Epsilonproteobacteria RepID=Q30RD7_SULDN
          Length = 111

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
            +K   +  A E +F      +   +  D   ++D+ V+   +LG T +++ E+L+L +G
Sbjct: 1   MKKRRHTYGAKEEIFDS----ESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKG 56

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           S++ L   AGE ++  +NG ++ +GEV+V      +RI +++  S  +  LS+
Sbjct: 57  SIIDLKKPAGESVETYVNGRILGRGEVMVYEKNLAIRINEVLDSSAVLYHLSK 109


>UniRef50_C6XFK8 Putative flagellar motor switch protein n=1 Tax=Candidatus
           Liberibacter asiaticus str. psy62 RepID=C6XFK8_LIBAP
          Length = 147

 Score = 93.0 bits (230), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVK 78

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138

Query: 121 RITDIITPS 129
           R+ +I+   
Sbjct: 139 RVIEILNAQ 147


>UniRef50_Q7UIS4 Probable flagellar motor switch protein fliN [Fragment] n=1
           Tax=Rhodopirellula baltica RepID=Q7UIS4_RHOBA
          Length = 144

 Score = 93.0 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTV 66
           P D     +    +E  +E K T       ++++              + ++ I   + V
Sbjct: 34  PVDKRCVRIQGRMSENATEDKPTEPSPPTSSMYK--------------EKVLKIRTTVNV 79

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
            L   +  ++++L L  GS++  D     PL +   G+ IA GE V + DK+G+R+ +I 
Sbjct: 80  TLAEKKEPLRKILALVPGSMLTFDVHCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIG 139

Query: 127 TPSE 130
            P E
Sbjct: 140 VPKE 143


>UniRef50_C9PEF6 Flagellar motor switch protein FliN n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PEF6_VIBFU
          Length = 128

 Score = 93.0 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
              A E           +G   ++ LI DIPV++TVE+ R R+ +KE++ +   SV+ LD
Sbjct: 27  PAMADELSSLPQDTALPTGNKSNMGLIRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLD 86

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
              GEP+DI ING L   G +++   KYGV++  ++ 
Sbjct: 87  KQEGEPVDIKINGVLFGTGNIIIQDGKYGVQVLALVN 123


>UniRef50_Q18D12 Putative flagellar motor switch protein n=3 Tax=Clostridium
           difficile RepID=Q18D12_CLOD6
          Length = 124

 Score = 93.0 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 62/86 (72%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
              +I  I+D+ ++L+V +GRT+MT++++L L +GS++ LD LA + ++ILI+  ++A G
Sbjct: 38  NRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYG 97

Query: 110 EVVVVADKYGVRITDIITPSERMRRL 135
           +VVVV   +GV+IT I++  + ++ L
Sbjct: 98  KVVVVDLNFGVKITSIVSEEDMVKSL 123


>UniRef50_A3SFT8 Surface presentation of antigens (SPOA) protein n=2
           Tax=Sulfitobacter RepID=A3SFT8_9RHOB
          Length = 114

 Score = 92.6 bits (229), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
           ++Q  T +                    + +D I  + + + V LGR+RM I ELL LT+
Sbjct: 4   NDQDKTQADLTDNNAQDAETKAPAGLDGKSLDAIFGVKLDVRVVLGRSRMPISELLNLTK 63

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVV-VVADKYGVRITDII 126
           GSV+ LD   GEP+DI+IN  ++A+G++V V  D  GV + +I+
Sbjct: 64  GSVIELDRRVGEPVDIMINDRMVARGDLVRVQGDSLGVALREIV 107


>UniRef50_Q6MBC5 Putative flagellar motor switch protein (= type III secretion
           translocase SctQ) n=1 Tax=Candidatus Protochlamydia
           amoebophila UWE25 RepID=Q6MBC5_PARUW
          Length = 445

 Score = 92.2 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 9/115 (7%)

Query: 12  NGAMDDLWAEALSEQKSTSSKS-AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
           N  +D++  E  S  K+ +S+S  A ++ +    G ++           IPV LTVE+GR
Sbjct: 337 NFTLDEVTEEEQSSPKNNASQSSPASSITENTKTGLITPNQ--------IPVNLTVEVGR 388

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
            +M++  LL+L  G+++ L+    + +D+ ING ++ +GE++ + +  GVR+ ++
Sbjct: 389 IQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVLGVRVLEL 443


>UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ/HrcQ n=2
           Tax=Cystobacterineae RepID=Q1D9K8_MYXXD
          Length = 467

 Score = 92.2 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 67/127 (52%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           ++D       + G+ D+  AE   E++  ++         +    D        DL+ D+
Sbjct: 341 ITDFVQGEPGHPGSADEASAEPGDEEEDFTNPELDVPPELEGAALDDVSKPDGSDLLGDV 400

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+++ VEL R  +T ++++ L  G V+ L+   GEP+++ +NG ++A+GE+V +  + GV
Sbjct: 401 PLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVELEGQLGV 460

Query: 121 RITDIIT 127
           RI  + +
Sbjct: 461 RIITLAS 467


>UniRef50_A8AKJ4 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
           BAA-895 RepID=A8AKJ4_CITK8
          Length = 132

 Score = 91.8 bits (227), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSD+ +    +    D   ++   E    + +       Q          ++ + L   I
Sbjct: 1   MSDLQHELSQSLDLDDLNLSDMTQED---TVEGNIRLDLQPETRNTAMTDIRKMALFSRI 57

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PV LT+E+    +++ EL+ +   SVV LD +AGEPLDI +NG L  + EVVV+ DKYG+
Sbjct: 58  PVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLNDKYGL 117

Query: 121 RITD 124
           RI +
Sbjct: 118 RIIE 121


>UniRef50_B9Z4S4 Flagellar motor switch protein FliN n=1 Tax=Lutiella nitroferrum
           2002 RepID=B9Z4S4_9NEIS
          Length = 119

 Score = 91.8 bits (227), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 50/70 (71%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
            +  IPV LT+E+G   +++ +L+ + QGSV+ LD LAGEPLDI +NG +I + EVVV  
Sbjct: 40  FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99

Query: 116 DKYGVRITDI 125
           D YG+R+ ++
Sbjct: 100 DNYGLRVVEL 109


>UniRef50_A6CBY5 Probable flagellar motor switch protein fliN n=1 Tax=Planctomyces
           maris DSM 8797 RepID=A6CBY5_9PLAN
          Length = 295

 Score = 91.8 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 49/114 (42%)

Query: 22  ALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRL 81
                   S  S  +   Q       +     ++ I  +PV+  V+L   ++ + +LL +
Sbjct: 179 EADPAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKLASKKIEMNQLLSI 238

Query: 82  TQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
             GS++  D    +PL++ IN  +   GE V + + +G++I  +    E   ++
Sbjct: 239 CPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGEHFGLKIDRVGFKEEYESKI 292


>UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9Y4_AMMDK
          Length = 114

 Score = 91.1 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 2/100 (2%)

Query: 33  SAAETVFQQFGGGDV--SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
             ++ VF  F             ++L+  + +++T  LG   +T++ELL L +GSV+ LD
Sbjct: 4   KISKVVFSPFSTEKAWEPKATTALELLHGVTLEVTALLGEATLTVQELLELREGSVIRLD 63

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
            +AGE +D+L++G    +GEV+V+ +++ VR+  +  P E
Sbjct: 64  RVAGEAVDLLLDGQKFGRGEVMVLNERFVVRVLQVFPPQE 103


>UniRef50_P57183 Flagellar motor switch protein fliN n=3 Tax=Buchnera aphidicola
           (Acyrthosiphon pisum) RepID=FLIN_BUCAI
          Length = 133

 Score = 91.1 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 56/69 (81%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I+++PV +TVELG +R+ IK+ L+ ++GS++ L+    EPL+I +NG+LIA GE+VV+ +
Sbjct: 54  ILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEE 113

Query: 117 KYGVRITDI 125
           KYG+RIT+I
Sbjct: 114 KYGIRITNI 122


>UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW52_ARCB4
          Length = 289

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 62/113 (54%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
             +   +  +             V+ T ++++L+ ++ +KL+V LG   + +K++LR   
Sbjct: 176 EPKVQVTPSTPVSNNTGSSNNSSVTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDV 235

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           G ++ L+ +  EPL+ILING  I +GE V+V  K+G++I  II    ++ ++ 
Sbjct: 236 GEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINEDFQIDKIG 288


>UniRef50_A5KY22 Flagellar motor switch protein n=2 Tax=Vibrionales
           RepID=A5KY22_9GAMM
          Length = 127

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 49/87 (56%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
           G     + +I L+  IPV +TVE+ R  + + ELL L  GSVV L+   G+P+DI ING 
Sbjct: 41  GADKEHVSNISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGT 100

Query: 105 LIAQGEVVVVADKYGVRITDIITPSER 131
               GE+V    +YGVR+  II    +
Sbjct: 101 AFGTGEIVSKNGQYGVRLLSIIKKPSK 127


>UniRef50_D1R7U0 Putative type III secretion system protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R7U0_9CHLA
          Length = 462

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 49/69 (71%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           I DIP+ +T E+GR +MT+K+L+ L  G+++ L+    + +D+++NG  +A+GE++ + D
Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452

Query: 117 KYGVRITDI 125
             GVR+ +I
Sbjct: 453 ALGVRVLEI 461


>UniRef50_Q058C3 Flagellar motor switch protein, C-ring protein n=1 Tax=Buchnera
           aphidicola str. Cc (Cinara cedri) RepID=Q058C3_BUCCC
          Length = 134

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 56/89 (62%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
                  + +  L D   +  IPV LT+EL + ++TI+ELL+  +GS++ L+    +PL+
Sbjct: 42  INNSYKTNANKVLFDSSALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLN 101

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIIT 127
           I IN YLIA GE+VV  D YGV+IT ++T
Sbjct: 102 IFINNYLIAIGELVVNNDCYGVQITKLLT 130


>UniRef50_B1K3A4 Flagellar motor switch protein FliN n=1 Tax=Burkholderia
           cenocepacia MC0-3 RepID=B1K3A4_BURCC
          Length = 113

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 49/81 (60%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
            + +     + ++  IPV+LT+E+G   + + +LL    GS V L+ LAGEPL I +NG 
Sbjct: 25  TETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGT 84

Query: 105 LIAQGEVVVVADKYGVRITDI 125
            +  GEVVV  + YG+RI ++
Sbjct: 85  PVGLGEVVVSGEHYGLRIIEL 105


>UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ADD4_CARHZ
          Length = 124

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
             F              + L+ +I +++   +G T +T+++LL L +G V+ LD   G+ 
Sbjct: 23  PEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDL 82

Query: 97  LDILINGYLIAQGEVVVVADKYGVRIT 123
           +D+ I+G   A GEVVV+ + YGVRIT
Sbjct: 83  IDLFIDGRRFAVGEVVVINEMYGVRIT 109


>UniRef50_Q1CTU2 Flagellar switch protein n=20 Tax=Helicobacteraceae
           RepID=Q1CTU2_HELPH
          Length = 123

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 50/81 (61%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++D+ +  + ELG T++ + ++LR  +GSV+ L   AGE +D  +NG +I +GEV+V   
Sbjct: 41  LLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFER 100

Query: 117 KYGVRITDIITPSERMRRLSR 137
              +R+ +I+  +  +  L++
Sbjct: 101 NLAIRLNEILDSNAIVYYLAK 121


>UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67MU5_SYMTH
          Length = 227

 Score = 89.1 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 49/73 (67%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DI + L+VELG+ R+ + E+L +  GSV+ LD LA EPL++ +NG      EV+ + +
Sbjct: 150 LLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIGE 209

Query: 117 KYGVRITDIITPS 129
           KYG+RI +   P+
Sbjct: 210 KYGIRIVESQLPN 222


>UniRef50_A3ZT50 Probable flagellar motor switch protein fliN n=1
           Tax=Blastopirellula marina DSM 3645 RepID=A3ZT50_9PLAN
          Length = 309

 Score = 88.0 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 48/80 (60%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++ I +++ V L   +M ++E+  L  GS++  D    E +D+ +  + IAQGE V + D
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283

Query: 117 KYGVRITDIITPSERMRRLS 136
           K+G+R+T+++ P ER   + 
Sbjct: 284 KFGMRVTNVLLPEERFISIK 303


>UniRef50_Q2CGH8 Flagellar motor switch protein FliN n=3 Tax=Rhodobacteraceae
           RepID=Q2CGH8_9RHOB
          Length = 132

 Score = 88.0 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTL-QDIDLIMD 59
           M D        + A      + L  +     +   +TV +   G  V+G   + I+ +++
Sbjct: 1   MPDPKTDKPSPDTAAPGQPDDTLLPELEAPEE---QTVLENMVGEQVNGDGGRSIEAMLN 57

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADK-Y 118
           + +++ + LGR+RM I +LL+L++GS++ LD   GEP+D++++  L+A+G++V V D   
Sbjct: 58  VGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDNRV 117

Query: 119 GVRITDII 126
           GV +T+I+
Sbjct: 118 GVTLTEIV 125


>UniRef50_C1ZEH8 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEH8_PLALI
          Length = 396

 Score = 88.0 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           + D        +  +DDL +           +SAA    +      V+  L  +  +  +
Sbjct: 260 LPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLAQETMPQQSVTSQLM-LQRLSGV 318

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
            V+L+V L   RM +  LL+L+ G++V       + LDI I     AQGE V + + +GV
Sbjct: 319 RVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGEHFGV 378

Query: 121 RITDIITPSERMRRL 135
           ++  +  P E+   L
Sbjct: 379 KVNRLGPPPEKPSSL 393


>UniRef50_C3XFR2 Flagellar motor switch protein FliN n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XFR2_9HELI
          Length = 128

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 52/90 (57%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
              + + + ++D+ V  + +LG T++ + E+L+  +GS++ L   AG  ++I +N  ++ 
Sbjct: 32  EDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVG 91

Query: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +GEV+V      +RI +I+  +  +  ++R
Sbjct: 92  KGEVMVYERNLAIRINEILDSNAIVYYIAR 121


>UniRef50_D2LD12 Surface presentation of antigens (SPOA) protein n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LD12_RHOVA
          Length = 120

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
           G    ++ ++ IP+ L V LG   M I ++ +L +G+V+ LD   G+ +D++ING +IA+
Sbjct: 35  GDPGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAK 94

Query: 109 GEVVVVAD---KYGVRITDIIT 127
           GE+VV+ +   ++GV +T++I 
Sbjct: 95  GEIVVLDEEGSRFGVTLTEMID 116


>UniRef50_A4U4R5 Surface presentation of antigens (SPOA) protein n=1
           Tax=Magnetospirillum gryphiswaldense RepID=A4U4R5_9PROT
          Length = 90

 Score = 87.2 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           + +  + V+    LG   + I +LL+L +G+VV LD    +P+D+ +N   IA+ EVVVV
Sbjct: 14  EAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVV 73

Query: 115 ADKYGVRITDIITPS 129
            D   V +T+++  +
Sbjct: 74  EDHLAVTVTEVLKRA 88


>UniRef50_A3WGR5 Flagellar motor switch protein n=1 Tax=Erythrobacter sp. NAP1
           RepID=A3WGR5_9SPHN
          Length = 102

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 50/73 (68%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +    D+ V+L+VELGRT M +K++L + +GSVV L+ L  E LD+  NG ++A+GEV+ 
Sbjct: 8   LKRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIA 67

Query: 114 VADKYGVRITDII 126
              ++ +RI +++
Sbjct: 68  QDGRFALRIVELV 80


>UniRef50_Q1IR54 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IR54_ACIBL
          Length = 109

 Score = 86.4 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 26  QKSTSSKSAAE---TVFQQFGGGDVSGTLQD--IDLIMDIPVKLTVELGRTRMTIKELLR 80
              T S+   E   TV Q   G   S  ++   ++    +   +T+EL   R T++++L 
Sbjct: 4   ASGTHSRCGTEGWWTVIQNESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLE 63

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           L  G+VV         L + +NG L+A  E  VV ++YGVR+T++
Sbjct: 64  LRPGAVVDTCWSQATDLPLRVNGALLAWSEFEVVDNRYGVRLTEL 108


>UniRef50_O67495 Flagellar motor switch protein fliN n=1 Tax=Aquifex aeolicus
           RepID=FLIN_AQUAE
          Length = 112

 Score = 86.1 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 59/108 (54%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
             E   E +    ++  E V ++         ++ I    DIPV++ V +GR   T+ EL
Sbjct: 1   MEEQTKEIQEEKKETPQEEVREEKKEEKKVSVIELIQHFSDIPVEVEVVVGRANKTLGEL 60

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           L +  GSV+ +D    + +DI +NG LIA+GE+V++  K GV+I +++
Sbjct: 61  LAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIIDGKIGVKIKEVV 108


>UniRef50_A7K019 Type III secretion inner membrane protein YscQ n=13
           Tax=Vibrionaceae RepID=A7K019_VIBSE
          Length = 322

 Score = 86.1 bits (212), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 41/67 (61%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +PV+LT ++G   +T+++L +L  G V  L+    +P+ +  NG +I + E+V V +  G
Sbjct: 249 LPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEHLG 308

Query: 120 VRITDII 126
           VR+ ++ 
Sbjct: 309 VRVLELF 315


>UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyphomonas neptunium
           ATCC 15444 RepID=Q0C2D2_HYPNA
          Length = 89

 Score = 85.7 bits (211), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 52/74 (70%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           ++MD+PV++ V LG  R+ ++EL+ L+ G +VAL+    EP+DI ++G L+A+G++VV  
Sbjct: 12  MLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKLVVTD 71

Query: 116 DKYGVRITDIITPS 129
            + GV +++II   
Sbjct: 72  GQLGVTLSEIIDSR 85


>UniRef50_A9DR59 Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex
           HEL-45 RepID=A9DR59_9RHOB
          Length = 154

 Score = 85.3 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDV-------------- 47
            D+ +P DD+               +    ++ A       GG D               
Sbjct: 4   PDLQSPKDDDTSTEGKASEATPKTTEQDQPRADAFGNTASLGGDDAGVFPQLDTEDSRNA 63

Query: 48  -----SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                      I+ ++++ + + + LG+ RM I  LL LT+GS+V L+   G P+D++++
Sbjct: 64  LAPRPEAGGAGINAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVS 123

Query: 103 GYLIAQGEVVVVA-DKYGVRITDII 126
             L+A+G++V V  D+ GV +T I+
Sbjct: 124 DRLVARGDLVKVGEDRLGVSLTQIV 148


>UniRef50_C6N6Z9 Putative surface presentation of antigens (SPOA) protein n=1
           Tax=Legionella drancourtii LLAP12 RepID=C6N6Z9_9GAMM
          Length = 101

 Score = 85.3 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           K    T                + L+ DI V+ TV +G   +TI EL  L  G  + L+ 
Sbjct: 6   KKVNLTEHPPQQTEGQFINKNYLGLVGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQ 65

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
              EP++I++N  +IA+GE++   D + V+IT+I +
Sbjct: 66  KTHEPVEIVLNERVIARGELMSHEDHFAVQITEIYS 101


>UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria RepID=B8DI82_LISMH
          Length = 515

 Score = 85.3 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 11/135 (8%)

Query: 1   MSDMNNPADDNNGA--MDDLWAEALSEQKST------SSKSAAETVFQQFGGGDVSGTLQ 52
           M  + NPA     A  M  + A+ ++E+++T        +  AE V Q     +   TL 
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQ--AVIEEKETLS 439

Query: 53  DIDLIM-DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +++ I+ DIPV L V  G  ++ +++ +   +  V+ L     EPL + +NG  I +G +
Sbjct: 440 EMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGIL 499

Query: 112 VVVADKYGVRITDII 126
           V V D +G+++T+++
Sbjct: 500 VRVDDHFGIQMTELV 514


>UniRef50_Q2NR65 Type III secretion apparatus SpaO n=2 Tax=Sodalis glossinidius
           RepID=Q2NR65_SODGM
          Length = 338

 Score = 84.5 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
           A A+  +      +AA T   +   GD +      D + ++P+ L   L R  +++ E+ 
Sbjct: 229 AAAVHPKVRDGLAAAAPTPTGRLALGDDTAA----DPLANLPLTLEFILQRRYLSLGEIQ 284

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           +  QG V+ LD    + ++I  NG+L+A GE+V + D+ GV + ++
Sbjct: 285 QFRQGKVLELDPEGEKHIEIRANGHLLALGELVQLEDRLGVELMEL 330


>UniRef50_Q1IR63 Flagellar motor switch FliN n=1 Tax=Candidatus Koribacter
           versatilis Ellin345 RepID=Q1IR63_ACIBL
          Length = 252

 Score = 84.5 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 44/66 (66%)

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           T+  G+  M ++++L L  GSVV LD    +P+++L++G +IA+G VVVV   YG+R+ +
Sbjct: 186 TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVDGNYGLRVAE 245

Query: 125 IITPSE 130
           +   +E
Sbjct: 246 VGAFAE 251


>UniRef50_Q01PQ3 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01PQ3_SOLUE
          Length = 82

 Score = 84.5 bits (208), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 47/75 (62%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
             +++  + D+PV + VEL R  MT +++L+L +G V+     AGE +DI I G L   G
Sbjct: 3   PKEEVAPLGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSG 62

Query: 110 EVVVVADKYGVRITD 124
           E+VV+ +  GVRITD
Sbjct: 63  EIVVIENTLGVRITD 77


>UniRef50_Q8KA38 Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola
           (Schizaphis graminum) RepID=FLIN_BUCAP
          Length = 133

 Score = 84.1 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 47/70 (67%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           ++ DI + +TVELG++++ IK+LL  ++GS++ L     +PL +  N  LIA GE+V   
Sbjct: 53  ILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVFSN 112

Query: 116 DKYGVRITDI 125
           +KYG+RI  I
Sbjct: 113 NKYGIRIISI 122


>UniRef50_D2R2R8 Surface presentation of antigens (SPOA) protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2R8_9PLAN
          Length = 329

 Score = 84.1 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           A           +         I+ I V + V L  T++ +K ++ L  GS++  +    
Sbjct: 218 ASPPPSDNVEERIYKLPPYTRSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCD 277

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
             L + +  + +A GE V V +K+G+R+T ++ P ER 
Sbjct: 278 SELSLQVGEHEVAIGEAVKVGEKFGLRLTSMVMPPERF 315


>UniRef50_C5CYF0 Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CYF0_VARPS
          Length = 151

 Score = 83.7 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 46/82 (56%)

Query: 44  GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
            G  +  L+D + +  I  +L V +G   +++ ELL   +  V+ LD     P+D+ I G
Sbjct: 60  QGGDASILKDWNPLHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEG 119

Query: 104 YLIAQGEVVVVADKYGVRITDI 125
            ++A+G++V V   + VRIT++
Sbjct: 120 KVVARGQLVAVDGHFAVRITEL 141


>UniRef50_A4J755 Surface presentation of antigens (SPOA) protein n=1
           Tax=Desulfotomaculum reducens MI-1 RepID=A4J755_DESRM
          Length = 128

 Score = 83.7 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQ-DIDLIMDIPVKLTVELGR 70
           N    +L+   L   ++    +  +  F           ++  +  I D+ V ++ ELG 
Sbjct: 3   NEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAELGE 62

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
             +  +E+L L  G+V+ ++  AG+ +++ IN    AQGE+++V DK+ VRI  I +P +
Sbjct: 63  KILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSPKK 122


>UniRef50_Q5DY32 Lateral flagellar export/assembly protein (FliN-like) n=9
           Tax=Enterobacteriaceae RepID=Q5DY32_ECOLX
          Length = 123

 Score = 83.7 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 48/73 (65%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
             + L+  IPV LT+E+    + + +LL +   +V+ LD LAGEPLDI +N  L+ + EV
Sbjct: 40  DSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEV 99

Query: 112 VVVADKYGVRITD 124
           VVV +KYG+R+ +
Sbjct: 100 VVVNEKYGLRVLE 112


>UniRef50_C3KNB2 Type III secretion system translocation protein, RhcQ n=1
           Tax=Rhizobium sp. NGR234 RepID=C3KNB2_RHISN
          Length = 351

 Score = 83.7 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 47/82 (57%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
               +  +++ + D+P++L  E+GR    +KE+ R+ +G+V+        P+ IL NG L
Sbjct: 268 QQPPSSGELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSILANGRL 327

Query: 106 IAQGEVVVVADKYGVRITDIIT 127
           + +GE++ + +  G+R+  + T
Sbjct: 328 VGKGELIRIGEGLGIRVVRLST 349


>UniRef50_C7DF35 Flagellar motor switch protein FliN n=1 Tax=Thalassiobium sp. R2A62
           RepID=C7DF35_9RHOB
          Length = 94

 Score = 83.0 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
             D+P+++T+ +GRT  T++ELL L + +++ LD    +P+DI +   LIA+GE+  + D
Sbjct: 13  FSDVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELED 72

Query: 117 ----KYGVRITDIITPSERMRR 134
               +  VR+T+II P    R+
Sbjct: 73  TNISQLAVRLTEIIDPPSGSRK 94


>UniRef50_C1SLE0 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SLE0_9BACT
          Length = 95

 Score = 83.0 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 46/68 (67%)

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
            + VELGR  + ++ELL   +G+++     +GEP+D L+NG  +A GE++V+ +++ VRI
Sbjct: 17  DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDERFAVRI 76

Query: 123 TDIITPSE 130
           T+I+   +
Sbjct: 77  TEILEKED 84


>UniRef50_UPI0001AF390C type III secretion component, putative n=2 Tax=Pseudomonas syringae
           group RepID=UPI0001AF390C
          Length = 353

 Score = 82.6 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 43/66 (65%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           + D+P+ L  +LG   +T+ +L  +  GS++ L GLA + +D+++NG  + +GE+V + D
Sbjct: 282 LDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAHDEVDLMVNGRRVGRGELVTIGD 341

Query: 117 KYGVRI 122
             GVR+
Sbjct: 342 GLGVRL 347


>UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Tax=Conexibacter woesei DSM
           14684 RepID=UPI0001C312B8
          Length = 301

 Score = 82.6 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
              G GDV   +   D + DI V++  ELGRTR+ + +   +  GSV+ LD  A +P+D+
Sbjct: 196 SDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDL 255

Query: 100 LINGYLIAQGEVVVVAD-KYGVRITDI 125
            +NG   A G +V+  D ++ +R+ ++
Sbjct: 256 YVNGLRFASGTLVLTDDGEWALRLAEV 282


>UniRef50_A3NFV2 Flagellar motor switch/type III secretory pathway protein n=9
           Tax=Betaproteobacteria RepID=A3NFV2_BURP6
          Length = 115

 Score = 81.8 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 49/71 (69%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
            L+  IPV+LT+E+G   +++ EL+ + +G+V+ LD LAGEPL + +NG  +   EVVV 
Sbjct: 37  QLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVS 96

Query: 115 ADKYGVRITDI 125
            + YG++I D+
Sbjct: 97  GENYGLKIIDL 107


>UniRef50_B1LY10 Surface presentation of antigens (SPOA) protein n=9
           Tax=Alphaproteobacteria RepID=B1LY10_METRJ
          Length = 122

 Score = 81.4 bits (200), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           + V LTV LGR RM +  LLR+ +G+V+ L+    + ++IL N + IA+G++VV  D+  
Sbjct: 28  LKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGDRIS 87

Query: 120 VRITDIITPSERM 132
           V +T++I  +  +
Sbjct: 88  VEVTELIRKAASI 100


>UniRef50_B1TBB1 Surface presentation of antigens (SPOA) protein n=1
           Tax=Burkholderia ambifaria MEX-5 RepID=B1TBB1_9BURK
          Length = 111

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 1/109 (0%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           + + A SE+         E    +          + +DL+ D+ V L V LG   + +KE
Sbjct: 1   MTSHATSERSVVMRVDLPEHEPAETTEARPVAHPR-LDLVGDVIVSLDVHLGSVDLAVKE 59

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           L+ L  GS+V LD    + +D+ +N   +A+ E+V V D++G+RI +I+
Sbjct: 60  LMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVAVDDRFGIRIVEIV 108


>UniRef50_Q0ANV1 Surface presentation of antigens (SPOA) protein n=3
           Tax=Alphaproteobacteria RepID=Q0ANV1_MARMM
          Length = 99

 Score = 81.4 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D+  I  + V+++V LGR++M I++ LR+ +G+V+ LD    + + IL N + IA+G+VV
Sbjct: 17  DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVV 76

Query: 113 VVADKYGVRIT 123
           +  D+  V IT
Sbjct: 77  IQGDRIAVSIT 87


>UniRef50_Q11M61 Surface presentation of antigens (SPOA) protein n=1
           Tax=Chelativorans sp. BNC1 RepID=Q11M61_MESSB
          Length = 354

 Score = 81.4 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
           A  + E   +   +  ++ + +FG G +       D I D+PV+L       R+T++EL 
Sbjct: 240 AAEIFESAESIIMNEIDSDWSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELR 299

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            L  G+ + L+     P+ IL NG    +G +V + D  GV+++ 
Sbjct: 300 ALGPGATLRLNVDLTRPVTILANGAPAGRGYLVQIGDHMGVQLSH 344


>UniRef50_A6Q2N5 Flagellar motor switch protein FliN/FliY n=1 Tax=Nitratiruptor sp.
           SB155-2 RepID=A6Q2N5_NITSB
          Length = 83

 Score = 80.7 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
           G   D  L+ DI +K++V LG T+  I E+L L +G V+ L+    + +D+++N   +A 
Sbjct: 6   GEQVDFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAI 65

Query: 109 GEVVVVADKYGVRITDI 125
           GE+VV+ DKYGVRI D+
Sbjct: 66  GEIVVINDKYGVRIVDL 82


>UniRef50_A9APA9 Type III secretion system apparatus protein YscQ/HrcQ n=17
           Tax=Burkholderia RepID=A9APA9_BURM1
          Length = 443

 Score = 80.7 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD-IPVKLTVELGRTRMTIKELLRLTQ 83
           E+          T      G     +  D    +D + V L  EL  T M + EL  L  
Sbjct: 333 ERIREMPLEPTRTDTPPATGAAHDASPADAPRALDGLAVDLRFELPPTSMPLGELSALQP 392

Query: 84  GSVVALDGLAGEPL-DILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133
           G+V+ L     + +  ++ NG LI  G ++ V  K GVR+  +  P+ R R
Sbjct: 393 GAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVVTLTQPAPRER 443


>UniRef50_Q2RPI0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RPI0_RHORT
          Length = 93

 Score = 80.7 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
             +  +PV+++V LG+  + + +LL+L +G+VV L+    EP++I  N  L+A+GEV++ 
Sbjct: 13  QAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIIT 72

Query: 115 A-DKYGVRITDII 126
             DK GV +T+++
Sbjct: 73  DGDKIGVTLTELV 85


>UniRef50_UPI00016C4201 hypothetical protein GobsU_09164 n=1 Tax=Gemmata obscuriglobus UQM
           2246 RepID=UPI00016C4201
          Length = 117

 Score = 80.7 bits (198), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 56/110 (50%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
            AE      +     A +  F +      +G    ++ + D+P+ +T  LGR  + I E+
Sbjct: 1   MAETTPTDPADPGVVARQAEFPRLEPRAGTGPGSTLESLRDVPITITARLGRAVLPIGEI 60

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           L L  GSVV L+ +   P+++ + G   A GEVVVV + + VRI +++ P
Sbjct: 61  LTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVVGEHFAVRIKNLLPP 110


>UniRef50_Q2SH51 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH51_HAHCH
          Length = 397

 Score = 80.3 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           Q             +  + D+PV++  E+ R   T+ ++  L  G  +ALD      + +
Sbjct: 283 QPMTHTTTPNNDAPLQPLHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTL 342

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPS 129
           L+    IA+ E+V V D+ G RIT +  P 
Sbjct: 343 LVQSQAIAEAELVQVGDQIGARITRLSLPP 372


>UniRef50_C0QPA3 Flagellar motor switch phosphatase FliY n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QPA3_PERMH
          Length = 79

 Score = 79.1 bits (194), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 45/74 (60%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
            DI  + D+ VK+T E+GR +    E++ L +G ++ LD    + +++ +   L A GE+
Sbjct: 5   HDISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGEL 64

Query: 112 VVVADKYGVRITDI 125
           +V  +KYG+R+ D+
Sbjct: 65  IVANEKYGIRVVDL 78


>UniRef50_Q2SEZ2 Flagellar motor switch protein n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SEZ2_HAHCH
          Length = 111

 Score = 78.7 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 27  KSTSSKSAAETVF---QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
           K T+S +  E V       GG         +DL+ ++ V L V LG   +T+ EL  LT 
Sbjct: 8   KETNSDAIVEEVILEPMNEGGAGDKLKSDPLDLVKNVKVTLDVYLGDANLTVAELTALTS 67

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            SVV ++    +P+++L++G ++A+G++V V D +G++IT+
Sbjct: 68  ESVVKMNKQLNDPIELLLDGKVVARGKLVAVDDVFGIQITE 108


>UniRef50_Q48IQ1 Type III secretion component, putative n=1 Tax=Pseudomonas syringae
           pv. phaseolicola 1448A RepID=Q48IQ1_PSE14
          Length = 301

 Score = 78.7 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 39  FQQFGGGDVSGTLQDIDLIMD-IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
           F +           D+D  +D +P+ L  +LG   +T+ +L  +  GS++ L G   + +
Sbjct: 211 FNRNDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEV 270

Query: 98  DILINGYLIAQGEVVVVADKYGVRI 122
           D+++NG  I +GE+V + D  GVR+
Sbjct: 271 DLMVNGRRIGRGELVSIGDGLGVRL 295


>UniRef50_Q0C5L8 Putative flagellar motor switch protein FliN n=1 Tax=Hyphomonas
           neptunium ATCC 15444 RepID=Q0C5L8_HYPNA
          Length = 99

 Score = 78.4 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           T F      D SG       I  +PV +TV +G+ R++++E+L L   SV+AL     +P
Sbjct: 2   TEFDGQDRRDPSGRNSYRRSIYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDP 61

Query: 97  LDILINGYLIAQGEVVVVAD-KYGVRITDIITPS 129
           +D+ I+  LIA+GE+V   D +  V+I +II  +
Sbjct: 62  VDLFIDDKLIAKGELVETDDGQIAVKIVEIIEKA 95


>UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Bacillales
           RepID=A7GNF7_BACCN
          Length = 554

 Score = 78.0 bits (191), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
            ++ E+        A    +            D  ++ ++ + +    G T  TI+++L 
Sbjct: 449 ASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILS 508

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           L +   V LD    EP+ I +N  L+A GE+V V   +GV++T
Sbjct: 509 LHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVDGFFGVKVT 551


>UniRef50_A0NWB8 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae
           RepID=A0NWB8_9RHOB
          Length = 88

 Score = 78.0 bits (191), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 49/83 (59%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +    +I V ++V LG   M + +LLR+ +G+V+ LD    E + I  N  L+A+G+VV+
Sbjct: 1   MTTFDEIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVL 60

Query: 114 VADKYGVRITDIITPSERMRRLS 136
           + ++ G+ IT+++     +R + 
Sbjct: 61  LGERIGISITEVLMRPPDIRPMR 83


>UniRef50_B4R925 FliN family protein n=8 Tax=Alphaproteobacteria RepID=B4R925_PHEZH
          Length = 108

 Score = 77.2 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 43/72 (59%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
             +  +  + V++ V LGR  + +++LLR+ +G+V+ LD    E + IL N + +A+GE+
Sbjct: 24  PSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVARGEI 83

Query: 112 VVVADKYGVRIT 123
            +  DK  + +T
Sbjct: 84  QISDDKIAIAVT 95


>UniRef50_D2TZ40 Type III secretion apparatus protein YscQ,HrcQ,SpaO n=1
           Tax=Arsenophonus nasoniae RepID=D2TZ40_9ENTR
          Length = 292

 Score = 77.2 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 40/72 (55%)

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIP+ L   L + ++ + EL  + QG V+  D  A   + I+ NG LIA+G ++ + D+ 
Sbjct: 221 DIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDRL 280

Query: 119 GVRITDIITPSE 130
           GV IT +    +
Sbjct: 281 GVEITHLFHNEK 292


>UniRef50_A7HWV0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWV0_PARL1
          Length = 78

 Score = 77.2 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 48/77 (62%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++ + ++ V+L+V LG++ M I +LL++ +G+V+ L     E + +L N   IA+GE++V
Sbjct: 1   MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60

Query: 114 VADKYGVRITDIITPSE 130
             ++  V IT ++   E
Sbjct: 61  QGERVAVSITTVLAGGE 77


>UniRef50_A8EW59 Flagellar motor switch protein FliN n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW59_ARCB4
          Length = 95

 Score = 76.8 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 48/81 (59%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           DL++D  + + V LG T +++ E L+LT+G +++L   AG   +I +N  +I  G+++V+
Sbjct: 9   DLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTGDIIVI 68

Query: 115 ADKYGVRITDIITPSERMRRL 135
            +K  VR+ D +     +R  
Sbjct: 69  DEKLAVRVQDAMDSDNVVRYF 89


>UniRef50_UPI0001744A0D type III secretion system protein n=1 Tax=Verrucomicrobium spinosum
           DSM 4136 RepID=UPI0001744A0D
          Length = 342

 Score = 76.4 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%)

Query: 38  VFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
            F            + + L+  + V+LT  +G    T+++L  L  G+ + L   A + +
Sbjct: 252 QFIMSDPAPTPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAPGACIELPTPASQAV 311

Query: 98  DILINGYLIAQGEVVVVADKYGVRITDI 125
            I  NG  I +GE++ + ++ GVRIT++
Sbjct: 312 TICANGRAIGKGELLDIGNRIGVRITEL 339


>UniRef50_B6WRL8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
           29098 RepID=B6WRL8_9DELT
          Length = 398

 Score = 76.0 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 10/125 (8%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
            DM +P  +         AE  SE   +  + A   V Q  G    S T++    +  + 
Sbjct: 263 PDMGDPGREP--------AEKGSEDGMSEERLAPTGVVQSDGAAAESATVEPAS-VGALE 313

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP-LDILINGYLIAQGEVVVVADKYGV 120
           + +  E+GR  + + EL  L  G  +AL G    P +DI + G L+AQG +V V    GV
Sbjct: 314 LPVVFEIGRLHLRLDELAALVPGHTLALGGETPSPVVDIRVAGQLLAQGRLVDVGGIPGV 373

Query: 121 RITDI 125
           +IT +
Sbjct: 374 QITRM 378


>UniRef50_A0RC99 Flagellar motor switch protein N n=71 Tax=Bacillus cereus group
           RepID=A0RC99_BACAH
          Length = 119

 Score = 76.0 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 49/87 (56%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
            + F G     +   ID + DI ++L V+LG+  +T+ ++  L  G V+ ++   G  +D
Sbjct: 13  LEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVD 72

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDI 125
           + ++   +  GE +V+ +K+G+ I++I
Sbjct: 73  VYLSNMKVGIGEAIVMDEKFGIIISEI 99


>UniRef50_B6IT07 Flagellar motor switch protein FliN n=2 Tax=Rhodospirillum centenum
           RepID=B6IT07_RHOCS
          Length = 103

 Score = 76.0 bits (186), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
           Q         L +I  I D  V+++V LG + + +++LL+L +G++V LD    +  DI+
Sbjct: 14  QAEPKKADSELPEISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDRKIDDLSDII 73

Query: 101 INGYLIAQGEVVVVADKYGVRITD 124
           ++G ++ +GEV +V DK  V   +
Sbjct: 74  VSGRMVGRGEVTIVEDKIAVTFRE 97


>UniRef50_C0AR55 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198
           RepID=C0AR55_9ENTR
          Length = 313

 Score = 75.7 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           +++M  P +++   +  L  E L +    +S +             V     ++  I  I
Sbjct: 196 LNEMFYPDENDLDDLIQLQQENLDDHNDVTSPT------------LVHDNSVNLQSINSI 243

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PV ++  L    + I+++  L  G  + L   A + + I +NG  +A GE+V + D + V
Sbjct: 244 PVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKIGDNFAV 303

Query: 121 RITDIITPSE 130
            I    +  E
Sbjct: 304 EIQRSFSAQE 313


>UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii
           H 168 RepID=B8CYQ6_HALOH
          Length = 334

 Score = 75.7 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMD----IPVKLTVELGRTRMTIKELLRLTQGS 85
                     Q F       T Q I+ I       P+++  E+G+T++T+ +LL L  G 
Sbjct: 223 EPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGD 282

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           V+ LD  A E +DI I   +  QG   V      V+ITD+I+
Sbjct: 283 VIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324


>UniRef50_B1FB78 Type III secretion system apparatus protein YscQ/HrcQ n=1
           Tax=Burkholderia ambifaria IOP40-10 RepID=B1FB78_9BURK
          Length = 309

 Score = 73.0 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +PVKL     +  +T+ ++ RL  G+V+ LD  A   + I  NG  +A GE++ V ++  
Sbjct: 238 LPVKLEFAFRQRELTVADVARLHPGAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLA 297

Query: 120 VRI--TDIITPS 129
           V I   +++ P 
Sbjct: 298 VEIQSIELVDPK 309


>UniRef50_Q02KI5 Translocation protein in type III secretion n=5 Tax=Pseudomonas
           aeruginosa RepID=Q02KI5_PSEAB
          Length = 309

 Score = 72.6 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 42/86 (48%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
                  +D+  +  +P+ ++ E+GR  + +  L  L  GS++ LD      + IL N  
Sbjct: 223 TPSLADSEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQR 282

Query: 105 LIAQGEVVVVADKYGVRITDIITPSE 130
            +  GE+V + D+ GVR+T +    E
Sbjct: 283 CLGIGELVRLQDRLGVRVTRLFGHDE 308


>UniRef50_Q18CW8 Flagellar motor switch protein n=5 Tax=Clostridium difficile
           RepID=Q18CW8_CLOD6
          Length = 104

 Score = 72.2 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
            + +G +++   + +  V + V +G    TIK +L L +GS++ L+    E LDI  N  
Sbjct: 18  EEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDR 77

Query: 105 LIAQGEVVVVADKYGVRITDI 125
           L A GE ++  +   VR++ I
Sbjct: 78  LFAYGESIITNETLSVRLSKI 98


>UniRef50_A4J3G9 CheC, inhibitor of MCP methylation n=2 Tax=Desulfotomaculum
           RepID=A4J3G9_DESRM
          Length = 333

 Score = 71.8 bits (175), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 1/127 (0%)

Query: 3   DMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPV 62
            + N     + A   L      + ++T  K++ ETV Q F        L ++   + IPV
Sbjct: 206 QITNVDAARDQANYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPV 265

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
            L   LG+ R T  +L +L +G  +A+   + + + +L+ G  +A GE+   A++  ++I
Sbjct: 266 DLEFSLGKIRCTAGDLAKLKKGDTLAI-PFSSQQIKLLVGGIPVALGELQTHAEETKIKI 324

Query: 123 TDIITPS 129
           + +   S
Sbjct: 325 SRLYQKS 331


>UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clostridia
           RepID=B0K1R9_THEPX
          Length = 332

 Score = 70.6 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           + LT +LG T +T+KE L    G ++ LD    EP+DI+I+  +  +G   +  +KY VR
Sbjct: 260 IPLTAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVR 319

Query: 122 ITDIITPSE 130
           IT++I   +
Sbjct: 320 ITEVIYKGD 328


>UniRef50_A8LMS4 Flagellar motor switch protein FliN n=5 Tax=Rhodobacteraceae
           RepID=A8LMS4_DINSH
          Length = 89

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
           + + +    ++ +P+ L+V +G+   T++ELL L + +V+ LD    +P+++ +  +LIA
Sbjct: 3   NPSPRPESPLVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIA 62

Query: 108 QGEVVVVAD--KYGVRITDIITPSERM 132
           +G +   AD  +  VR+T++I+P   +
Sbjct: 63  RGVLEEDADSHRLSVRLTEVISPERVV 89


>UniRef50_Q1GCD9 Flagellar motor switch protein fliN n=20 Tax=Rhodobacterales
           RepID=Q1GCD9_SILST
          Length = 98

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
              G       +  +  + +PV++ V +G+ R  I++L+ L + +++ LD    +P+D+ 
Sbjct: 2   DETGELNPKAAEASNPFVSVPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLY 61

Query: 101 INGYLIAQGEVVVVA----DKYGVRITDIITPSERM 132
           +   L+A+G++  +      +  VR+T+I      +
Sbjct: 62  VGDRLVARGQLEEMEGDQAGQLAVRLTEIADLQSGL 97


>UniRef50_P42713 Yop proteins translocation protein Q n=21 Tax=Yersinia
           RepID=YSCQ_YERPE
          Length = 307

 Score = 69.5 bits (169), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
             + +  +  +PV+++ E+GR  +    L  L  GS++ L       + +L NG L+  G
Sbjct: 226 NPEPLTDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHG 285

Query: 110 EVVVVADKYGVRI---TDI 125
            +V +  + GVRI   T++
Sbjct: 286 RLVEIQGRLGVRIERLTEV 304


>UniRef50_B3RAD9 SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO
           family n=1 Tax=Cupriavidus taiwanensis
           RepID=B3RAD9_CUPTR
          Length = 399

 Score = 69.1 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           +D  +  D +NGA  +    A   Q      +A                   +  +  + 
Sbjct: 286 ADSTDSTDVSNGAHMEEQDPARQSQPIPHPDAAQPP----------------LSRLDQLE 329

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLA-GEPLDILINGYLIAQGEVVVVADKYGV 120
           V L  E+G   + + EL  +  G V  L        + I+ NG  I  G ++ V ++ GV
Sbjct: 330 VTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAVGNRLGV 389

Query: 121 RIT 123
           RIT
Sbjct: 390 RIT 392


>UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6B3_THEAS
          Length = 335

 Score = 68.7 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDL-IMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
            K +++  F   G  +V G  + I+  +  + V + +ELG T +++ ++L+L +G V+ L
Sbjct: 227 DKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDVIRL 286

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           D    +PL + +   +    E       Y  R+ ++++  E +
Sbjct: 287 DAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEEGL 329


>UniRef50_B3Q297 Type III secretion system translocation protein n=6
           Tax=Rhizobium/Agrobacterium group RepID=B3Q297_RHIE6
          Length = 339

 Score = 67.2 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
             +TV Q+  G      +        IP+KL  + GR  + ++ L  + +G V  LD   
Sbjct: 252 TNDTVDQELQGEPRPSPVDS------IPIKLVFDAGRLELPLRALETIGEGYVFNLDRPL 305

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
            + +DI+  G +I +GE++ V     VR+T +
Sbjct: 306 SDAVDIIAQGRIIGRGEIISVDGLSAVRVTAL 337


>UniRef50_P55719 Probable translocation protein y4yK n=5 Tax=Rhizobiales
           RepID=Y4YK_RHISN
          Length = 358

 Score = 66.8 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           + DI + L  E GR  +++ EL     G V  L       +DI+ NG  I +G++V + D
Sbjct: 285 LDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGD 344

Query: 117 KYGVRI 122
             G+R+
Sbjct: 345 DLGIRL 350


>UniRef50_Q7NUS2 Surface presentation of antigens; secretory proteins n=1
           Tax=Chromobacterium violaceum RepID=Q7NUS2_CHRVO
          Length = 296

 Score = 66.8 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 43/85 (50%)

Query: 38  VFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
           + +       +   + +  +  +PV+L   L ++ +T+ EL  L + +V+ L   A   +
Sbjct: 201 IMEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRV 260

Query: 98  DILINGYLIAQGEVVVVADKYGVRI 122
           ++  NG L+ +GE+V +  + GV +
Sbjct: 261 ELRANGALLGRGELVQLDGRLGVEV 285


>UniRef50_P74860 Secretion system apparatus protein ssaQ n=37 Tax=Salmonella
           enterica RepID=SSAQ_SALTY
          Length = 322

 Score = 66.4 bits (161), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 36  ETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGE 95
           ET+         S     ++ +  IP ++  E+GR  + I +L +L  G V+ + G    
Sbjct: 227 ETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAP 285

Query: 96  PLDILINGYLIAQGEVVVVADKYGVRIT 123
            + I +N  +I QGE++   +++ VRIT
Sbjct: 286 EVTIRVNDRIIGQGELIACGNEFMVRIT 313


>UniRef50_UPI00019F17D0 translocation protein in type III secretion n=1 Tax=Citrobacter
           youngae ATCC 29220 RepID=UPI00019F17D0
          Length = 250

 Score = 65.3 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 42/86 (48%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           +  +Q     +  +   ++ + D+ + LT E+G T +T  EL  L  G V+  D L    
Sbjct: 159 SEIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNC 218

Query: 97  LDILINGYLIAQGEVVVVADKYGVRI 122
           + +  NG + A G ++++ D   VRI
Sbjct: 219 VKLRANGSVFASGNLLMLGDTPAVRI 244


>UniRef50_B8DI89 Flagellar motor switch protein n=17 Tax=Listeria RepID=B8DI89_LISMH
          Length = 100

 Score = 65.3 bits (158), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
             ++             I  + +I V L V LG+  M + ++  L+ G V+ ++   G  
Sbjct: 11  PEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHK 70

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDI 125
           ++I ++   +  GE +++ + +G+ I++I
Sbjct: 71  VEIFLDEKKVGIGEAILMDENFGIVISEI 99


>UniRef50_B2V6Q2 Surface presentation of antigens (SPOA) protein n=2
           Tax=Sulfurihydrogenibium RepID=B2V6Q2_SULSY
          Length = 87

 Score = 64.9 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 44/81 (54%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           +V    + I LI +I + + +EL   +   + LL L +G ++ L+    + ++I      
Sbjct: 6   EVDEIYKKISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEK 65

Query: 106 IAQGEVVVVADKYGVRITDII 126
           +  GE+V V +KYGVR+ D+I
Sbjct: 66  VGFGELVNVNEKYGVRLVDLI 86


>UniRef50_B1K4V5 Type III secretion system apparatus protein YscQ/HrcQ n=1
           Tax=Burkholderia cenocepacia MC0-3 RepID=B1K4V5_BURCC
          Length = 364

 Score = 64.5 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
            T             G  D          + ++ + ++ E+    + + +L  L  G V+
Sbjct: 263 DTEPAMTDRNDHPVPGAPDAETQTS----LDELELPVSFEIETVTLPLAQLSALRPGYVI 318

Query: 88  ALDGLAGEP-LDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
            L G   +  + +L  G LI  GE+V V ++ GVR+ D+    +
Sbjct: 319 ELRGTLRDARIRLLAYGQLIGIGELVTVGEQLGVRVIDVFGSHD 362


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Pro...   166   2e-40
UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=En...   158   3e-38
UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion...   133   2e-30
UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion...   132   3e-30
UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Ther...   132   4e-30
UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicute...   130   2e-29
UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema...   129   2e-29
UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria ...   128   4e-29
UniRef50_Q2LT02 Flagellar motor switch protein n=2 Tax=Deltaprot...   128   4e-29
UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=...   128   5e-29
UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Therm...   127   9e-29
UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion...   127   9e-29
UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion...   126   2e-28
UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion...   125   3e-28
UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Deth...   125   4e-28
UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n...   124   6e-28
UniRef50_Q47I10 Type III secretion system outer membrane O prote...   124   6e-28
UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=...   124   9e-28
UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmi...   124   9e-28
UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Ther...   123   1e-27
UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspi...   123   2e-27
UniRef50_Q2NX05 Flagellar motor switch protein FliN n=5 Tax=Ente...   123   3e-27
UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clos...   122   3e-27
UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion...   122   3e-27
UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pp...   122   4e-27
UniRef50_Q31FQ0 Flagellar motor switch protein FliN n=5 Tax=Gamm...   121   5e-27
UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion...   121   5e-27
UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobaci...   121   6e-27
UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halot...   121   9e-27
UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brev...   121   9e-27
UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=...   120   1e-26
UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clost...   120   1e-26
UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Therm...   120   1e-26
UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion...   120   1e-26
UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desul...   119   2e-26
UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Delt...   119   3e-26
UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion...   119   3e-26
UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridiu...   119   3e-26
UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Spha...   118   5e-26
UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathwa...   118   5e-26
UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clos...   118   5e-26
UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Pro...   118   6e-26
UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion...   118   7e-26
UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion...   117   1e-25
UniRef50_B5YIZ3 Flagellar motor switch protein FliN n=1 Tax=Ther...   116   2e-25
UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Pro...   116   2e-25
UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Pro...   116   3e-25
UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kine...   116   3e-25
UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridi...   116   3e-25
UniRef50_B8FK37 Flagellar motor switch protein FliN n=3 Tax=Bact...   115   4e-25
UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacte...   115   4e-25
UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Pro...   115   4e-25
UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms Rep...   115   5e-25
UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotro...   114   1e-24
UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathwa...   113   1e-24
UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax...   113   1e-24
UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jone...   113   2e-24
UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein ...   112   4e-24
UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerot...   112   4e-24
UniRef50_Q6AJS8 Probable flagellar motor switch protein (FliN) n...   112   4e-24
UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion...   111   5e-24
UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moore...   111   9e-24
UniRef50_Q0AA08 Flagellar motor switch protein FliN n=49 Tax=cel...   111   1e-23
UniRef50_B4U6V5 Flagellar motor switch protein FliN n=1 Tax=Hydr...   110   1e-23
UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding...   109   2e-23
UniRef50_Q1NP93 Surface presentation of antigens (SPOA) protein ...   109   2e-23
UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobac...   109   2e-23
UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pp...   109   3e-23
UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Deni...   109   3e-23
UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lact...   108   4e-23
UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydo...   108   7e-23
UniRef50_A8RWA3 Putative uncharacterized protein n=3 Tax=Clostri...   106   2e-22
UniRef50_D2R538 Flagellar motor switch protein FliN n=2 Tax=Plan...   106   2e-22
UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Cand...   106   3e-22
UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacte...   106   3e-22
UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobi...   106   3e-22
UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitr...   105   3e-22
UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acid...   105   3e-22
UniRef50_Q8D3E9 FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8...   105   4e-22
UniRef50_C2KZ02 Possible flagellar motor switch protein FliY n=1...   105   4e-22
UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Heli...   105   4e-22
UniRef50_C0GJF1 Flagellar motor switch protein FliN n=1 Tax=Deth...   105   5e-22
UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Noca...   104   6e-22
UniRef50_B2V6S4 Flagellar motor switch protein FliN n=3 Tax=Sulf...   104   7e-22
UniRef50_A0LDK9 Flagellar motor switch protein FliN n=1 Tax=Magn...   104   1e-21
UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas...   104   1e-21
UniRef50_Q04RL4 Endoflagellar motor switch protein n=6 Tax=Lepto...   104   1e-21
UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sang...   103   1e-21
UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arth...   103   1e-21
UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella the...   103   1e-21
UniRef50_Q7ULU7 Flagellar motor switch protein fliN n=1 Tax=Rhod...   103   1e-21
UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobi...   103   2e-21
UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 T...   103   3e-21
UniRef50_Q2RZE3 Possible flagellar motor switch FliN n=1 Tax=Sal...   102   3e-21
UniRef50_Q1Q6T3 Strong similar to flagellar motor switch protein...   102   4e-21
UniRef50_A8RWD0 Putative uncharacterized protein n=3 Tax=Clostri...   102   4e-21
UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhod...   102   4e-21
UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulf...   101   5e-21
UniRef50_A4A5Y8 Flagellar motor switch protein fliN n=3 Tax=uncl...   101   5e-21
UniRef50_A9HHD1 Flagellar motor switch protein FliN n=2 Tax=Rhod...   101   7e-21
UniRef50_C1F999 Putative flagellar motor switch protein FliN n=1...   101   8e-21
UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion...   100   1e-20
UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Plan...   100   1e-20
UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibac...   100   1e-20
UniRef50_C0QPC5 Flagellar motor switch protein FliN n=2 Tax=Aqui...   100   1e-20
UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campyloba...   100   2e-20
UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundi...   100   2e-20
UniRef50_Q0EZ61 Flagellar protein n=1 Tax=Mariprofundus ferrooxy...    99   2e-20
UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivir...    99   2e-20
UniRef50_C1A552 Flagellar motor switch protein FliN n=1 Tax=Gemm...   100   3e-20
UniRef50_B9KJD9 Flagellar switch protein n=5 Tax=Rhodobacter sph...   100   3e-20
UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Hel...    99   3e-20
UniRef50_Q44903 Flagellar motor switch protein fliN n=21 Tax=Spi...    99   4e-20
UniRef50_C0C1N9 Putative uncharacterized protein n=1 Tax=Clostri...    99   4e-20
UniRef50_Q1GNY9 Flagellar motor switch FliN n=2 Tax=Sphingomonad...    99   5e-20
UniRef50_Q4JMS2 Predicted flagellar motor switch protein n=3 Tax...    98   6e-20
UniRef50_A1UTV7 Flagellar motor switch protein fliY n=35 Tax=Rhi...    98   6e-20
UniRef50_A1QZ73 Flagellar motor switch protein FliN n=7 Tax=Spir...    98   6e-20
UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Acti...    98   7e-20
UniRef50_B1LV08 Flagellar motor switch protein FliN n=1 Tax=Meth...    98   9e-20
UniRef50_D2S982 Flagellar motor switch protein FliN n=1 Tax=Geod...    98   1e-19
UniRef50_C6NYG7 Flagellar motor switch protein FliN n=1 Tax=Acid...    98   1e-19
UniRef50_Q03593 Flagellar motor switch protein fliN n=21 Tax=Alp...    97   1e-19
UniRef50_Q89AZ3 Flagellar motor switch protein fliN n=1 Tax=Buch...    97   1e-19
UniRef50_C7M222 Flagellar motor switch protein FliN n=1 Tax=Acid...    97   2e-19
UniRef50_A5V6A7 Flagellar motor switch protein FliN n=4 Tax=Sphi...    97   2e-19
UniRef50_B1I5E1 Surface presentation of antigens (SPOA) protein ...    96   2e-19
UniRef50_D0I457 Flagellar motor switch protein FliN n=2 Tax=Vibr...    96   3e-19
UniRef50_C0AR55 Putative uncharacterized protein n=1 Tax=Proteus...    96   4e-19
UniRef50_Q07SI0 Flagellar motor switch protein FliN n=7 Tax=Alph...    96   5e-19
UniRef50_Q2WA21 Flagellar motor switch/type III secretory pathwa...    95   5e-19
UniRef50_B6R821 Flagellar motor switch protein FliN n=2 Tax=Rhod...    95   6e-19
UniRef50_A4SI07 Lateral flagellar motor switch protein, lfiN n=2...    95   8e-19
UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ...    95   9e-19
UniRef50_C8W1G7 Surface presentation of antigens (SPOA) protein ...    95   9e-19
UniRef50_B9JRN7 Flagellar motor switch protein FliN n=2 Tax=Rhiz...    95   9e-19
UniRef50_D1AZW0 Surface presentation of antigens (SPOA) protein ...    94   1e-18
UniRef50_A1T0L0 Surface presentation of antigens (SPOA) protein ...    94   1e-18
UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arco...    93   2e-18
UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Plan...    93   2e-18
UniRef50_B1ZL53 Flagellar motor switch protein FliN n=6 Tax=Rhiz...    93   2e-18
UniRef50_A7H064 Flagellar motor switch protein FliN n=8 Tax=Epsi...    93   2e-18
UniRef50_A4THZ3 Flagellar switch protein n=26 Tax=Enterobacteria...    93   2e-18
UniRef50_Q57259 Flagellar motor switch protein fliN n=2 Tax=Rhiz...    93   3e-18
UniRef50_A7K019 Type III secretion inner membrane protein YscQ n...    93   4e-18
UniRef50_B6QZA8 Flagellar motor switch protein n=1 Tax=Pseudovib...    93   4e-18
UniRef50_B8EL08 Flagellar motor switch protein FliN n=2 Tax=Beij...    92   5e-18
UniRef50_A5FYJ9 Flagellar motor switch protein FliN n=17 Tax=Alp...    92   5e-18
UniRef50_C1ZEH8 Flagellar motor switch/type III secretory pathwa...    92   5e-18
UniRef50_A6F9R7 Flagellar motor switch protein n=1 Tax=Moritella...    92   6e-18
UniRef50_A5D0I4 Flagellar motor switch/type III secretory pathwa...    92   6e-18
UniRef50_A6CBY5 Probable flagellar motor switch protein fliN n=1...    91   7e-18
UniRef50_C0GJH0 Surface presentation of antigens (SPOA) protein ...    91   7e-18
UniRef50_B6IQ95 Flagellar motor switch protein FliN n=1 Tax=Rhod...    91   7e-18
UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carb...    91   8e-18
UniRef50_B6IW97 Flagellar motor switch protein FliN n=1 Tax=Rhod...    91   9e-18
UniRef50_D1R7U0 Putative type III secretion system protein n=1 T...    91   1e-17
UniRef50_A5KY22 Flagellar motor switch protein n=2 Tax=Vibrional...    91   1e-17
UniRef50_Q0G104 Flagellar motor switch FliN protein:Surface pres...    91   1e-17
UniRef50_C6XFK8 Putative flagellar motor switch protein n=1 Tax=...    91   1e-17
UniRef50_P42713 Yop proteins translocation protein Q n=21 Tax=Ye...    91   1e-17
UniRef50_Q11LL6 Flagellar motor switch protein FliN n=3 Tax=Phyl...    90   2e-17
UniRef50_Q18D12 Putative flagellar motor switch protein n=3 Tax=...    90   2e-17
UniRef50_A5P6I8 Flagellar motor switch protein n=1 Tax=Erythroba...    90   2e-17
UniRef50_A1RF65 Flagellar motor switch protein FliN n=8 Tax=Shew...    90   2e-17
UniRef50_Q058C3 Flagellar motor switch protein, C-ring protein n...    90   2e-17
UniRef50_C9PEF6 Flagellar motor switch protein FliN n=1 Tax=Vibr...    90   2e-17
UniRef50_C6N6Z9 Putative surface presentation of antigens (SPOA)...    90   3e-17
UniRef50_C5JB71 Flagellar motor switch/type III secretory pathwa...    89   4e-17
UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein ...    89   4e-17
UniRef50_A3SFT8 Surface presentation of antigens (SPOA) protein ...    89   4e-17
UniRef50_A4Y0Q2 Flagellar motor switch protein FliN n=1 Tax=Pseu...    89   5e-17
UniRef50_O54245 Flagellar motor switch protein fliN n=15 Tax=Rhi...    89   5e-17
UniRef50_A8AKJ4 Putative uncharacterized protein n=1 Tax=Citroba...    89   5e-17
UniRef50_UPI0001744A0D type III secretion system protein n=1 Tax...    88   6e-17
UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein ...    88   6e-17
UniRef50_B3RAD9 SctQ: non flagellar T3S system conserved protein...    88   7e-17
UniRef50_B1ZR34 Flagellar motor switch protein FliN n=3 Tax=Verr...    88   9e-17
UniRef50_Q6MBC5 Putative flagellar motor switch protein (= type ...    88   1e-16
UniRef50_A7K1M2 Flagellar motor switch protein FliN n=17 Tax=Vib...    87   2e-16
UniRef50_Q02KI5 Translocation protein in type III secretion n=5 ...    87   2e-16
UniRef50_Q1CTU2 Flagellar switch protein n=20 Tax=Helicobacterac...    86   3e-16
UniRef50_Q11M61 Surface presentation of antigens (SPOA) protein ...    86   4e-16
UniRef50_O67495 Flagellar motor switch protein fliN n=1 Tax=Aqui...    85   6e-16
UniRef50_UPI0001AF390C type III secretion component, putative n=...    85   6e-16
UniRef50_B1K3A4 Flagellar motor switch protein FliN n=1 Tax=Burk...    85   6e-16
UniRef50_A4J755 Surface presentation of antigens (SPOA) protein ...    85   6e-16
UniRef50_C3XFR2 Flagellar motor switch protein FliN n=1 Tax=Heli...    85   7e-16
UniRef50_P57183 Flagellar motor switch protein fliN n=3 Tax=Buch...    85   8e-16
UniRef50_Q2NR65 Type III secretion apparatus SpaO n=2 Tax=Sodali...    85   8e-16
UniRef50_Q2SH51 Flagellar motor switch/type III secretory pathwa...    84   1e-15
UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halo...    84   1e-15
UniRef50_Q7UIS4 Probable flagellar motor switch protein fliN [Fr...    84   2e-15
UniRef50_A9APA9 Type III secretion system apparatus protein YscQ...    83   2e-15
UniRef50_C5CYF0 Surface presentation of antigens (SPOA) protein ...    83   2e-15
UniRef50_C3KNB2 Type III secretion system translocation protein,...    83   2e-15
UniRef50_B9Z4S4 Flagellar motor switch protein FliN n=1 Tax=Luti...    83   2e-15
UniRef50_Q2CGH8 Flagellar motor switch protein FliN n=3 Tax=Rhod...    83   2e-15
UniRef50_A3WGR5 Flagellar motor switch protein n=1 Tax=Erythroba...    83   3e-15
UniRef50_A4U4R5 Surface presentation of antigens (SPOA) protein ...    83   3e-15
UniRef50_D2R2R8 Surface presentation of antigens (SPOA) protein ...    83   4e-15
UniRef50_Q8KA38 Flagellar motor switch protein fliN n=1 Tax=Buch...    83   4e-15
UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiob...    82   5e-15
UniRef50_C1SLE0 Flagellar motor switch/type III secretory pathwa...    82   5e-15
UniRef50_D2LD12 Surface presentation of antigens (SPOA) protein ...    82   6e-15
UniRef50_B1FB78 Type III secretion system apparatus protein YscQ...    82   7e-15
UniRef50_A9DR59 Flagellar motor switch protein n=1 Tax=Oceanibul...    81   7e-15
UniRef50_A3ZT50 Probable flagellar motor switch protein fliN n=1...    81   7e-15
UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clo...    81   8e-15
UniRef50_Q48IQ1 Type III secretion component, putative n=1 Tax=P...    81   8e-15
UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natr...    81   8e-15
UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria...    81   8e-15
UniRef50_Q1MP57 Putative translocation protein in type III secre...    81   8e-15
UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyph...    81   8e-15
UniRef50_D2TZ40 Type III secretion apparatus protein YscQ,HrcQ,S...    81   8e-15
UniRef50_A2S1P2 Type III secretion system protein BsaV n=40 Tax=...    81   9e-15
UniRef50_B1TBB1 Surface presentation of antigens (SPOA) protein ...    81   1e-14
UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobac...    81   1e-14
UniRef50_B1LY10 Surface presentation of antigens (SPOA) protein ...    81   1e-14
UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clos...    80   2e-14
UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Baci...    80   2e-14
UniRef50_Q7NUS2 Surface presentation of antigens; secretory prot...    80   2e-14
UniRef50_P74860 Secretion system apparatus protein ssaQ n=37 Tax...    80   3e-14
UniRef50_Q01PQ3 Surface presentation of antigens (SPOA) protein ...    80   3e-14
UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Ther...    80   3e-14
UniRef50_UPI00016A9827 RhcQ protein n=2 Tax=Burkholderia oklahom...    80   3e-14
UniRef50_Q0C5L8 Putative flagellar motor switch protein FliN n=1...    79   4e-14
UniRef50_B2Q5J4 Putative uncharacterized protein n=1 Tax=Provide...    79   4e-14
UniRef50_UPI00016C4201 hypothetical protein GobsU_09164 n=1 Tax=...    79   4e-14
UniRef50_A6Q2N5 Flagellar motor switch protein FliN/FliY n=1 Tax...    79   4e-14
UniRef50_B1K4V5 Type III secretion system apparatus protein YscQ...    79   5e-14
UniRef50_A3NFV2 Flagellar motor switch/type III secretory pathwa...    79   5e-14
UniRef50_B6WRL8 Putative uncharacterized protein n=1 Tax=Desulfo...    79   5e-14
UniRef50_Q0ANV1 Surface presentation of antigens (SPOA) protein ...    78   6e-14
UniRef50_C6CGS2 Type III secretion system apparatus protein YscQ...    78   6e-14
UniRef50_A4XNA3 Surface presentation of antigens (SPOA) protein ...    78   6e-14
UniRef50_A7HWV0 Surface presentation of antigens (SPOA) protein ...    78   7e-14
UniRef50_A1TJB9 Type III secretion system apparatus protein YscQ...    78   8e-14
UniRef50_A0NWB8 Putative uncharacterized protein n=3 Tax=Rhodoba...    78   8e-14
UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Ta...    78   9e-14
UniRef50_A2S1D1 Type III secretion inner membrane protein SctQ n...    78   9e-14
UniRef50_Q56022 Surface presentation of antigens protein spaO n=...    78   1e-13
UniRef50_Q1IR63 Flagellar motor switch FliN n=1 Tax=Candidatus K...    78   1e-13
UniRef50_D2TXN7 Type III secretion component protein SctQ n=1 Ta...    78   1e-13
UniRef50_C0QPA3 Flagellar motor switch phosphatase FliY n=1 Tax=...    78   1e-13
UniRef50_B1T0N2 Type III secretion system apparatus protein YscQ...    78   1e-13
UniRef50_C7DF35 Flagellar motor switch protein FliN n=1 Tax=Thal...    78   1e-13
UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP...    77   1e-13
UniRef50_Q3JLG5 SctQ n=18 Tax=pseudomallei group RepID=Q3JLG5_BURP1    77   2e-13
UniRef50_B4R925 FliN family protein n=8 Tax=Alphaproteobacteria ...    77   2e-13

Sequences not found previously or not previously below threshold:

>UniRef50_P15070 Flagellar motor switch protein fliN n=15 Tax=Proteobacteria
           RepID=FLIN_ECOLI
          Length = 137

 Score =  166 bits (420), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI
Sbjct: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
           RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


>UniRef50_P26419 Flagellar motor switch protein fliN n=125 Tax=Enterobacteriaceae
           RepID=FLIN_SALTY
          Length = 137

 Score =  158 bits (401), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 123/137 (89%), Positives = 133/137 (97%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSDMNNP+D+N GA+DDLWA+AL+EQK+T++KSAA+ VFQQ GGGDVSG +QDIDLIMDI
Sbjct: 1   MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
           RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


>UniRef50_C6D2V9 CheC, inhibitor of MCP methylation / FliN fusion protein n=15
           Tax=Bacteria RepID=C6D2V9_PAESJ
          Length = 421

 Score =  133 bits (335), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 3/137 (2%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSA--AETVFQQFGGGD-VSGTLQDIDLIM 58
           +   NP   +      +  +        ++++       F  F     V     +++L++
Sbjct: 284 NQPYNPYQQSAAFDIQMQPQGPQTYGHAANRNVNVQPVQFANFNQAPYVQTDETNLNLLL 343

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIP+K+TVELGRT+  IK++L L+QGS++ LD LAGEP+DIL+N  LIA+GEVVV+ + +
Sbjct: 344 DIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENF 403

Query: 119 GVRITDIITPSERMRRL 135
           GVR+TDI++  +R+++L
Sbjct: 404 GVRVTDIVSQWDRIQKL 420


>UniRef50_C7ILI0 CheC, inhibitor of MCP methylation / FliN fusion protein n=3
           Tax=Clostridiales RepID=C7ILI0_9CLOT
          Length = 400

 Score =  132 bits (333), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/121 (46%), Positives = 76/121 (62%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRT 71
                         Q+  S  S     FQ F  G  +   ++I LIMD+P+++TVELGRT
Sbjct: 280 AMPNFGFDGGYQEPQRQRSPVSVQPVQFQAFDDGLSATEKKNISLIMDLPLQVTVELGRT 339

Query: 72  RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
           +  IK++L    GSV+ LD LAGEP+DIL+NG  IA+GEVVV+ + +GVRITDII PS+R
Sbjct: 340 QKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKR 399

Query: 132 M 132
           +
Sbjct: 400 L 400


>UniRef50_D1B6B2 Flagellar motor switch protein FliN n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6B2_THEAS
          Length = 375

 Score =  132 bits (332), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 84/121 (69%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           D+ +    S   ST+        F   GG +V+ +   IDLI DIPV++TVELGRTR TI
Sbjct: 254 DEGFYAPRSASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTI 313

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
            E+L ++ GSVV L+ +AGEP+D+L+NG LIA+GEVVV+ + +GVR+T+I++ +ER+R +
Sbjct: 314 GEILNMSPGSVVELNRMAGEPVDVLVNGKLIARGEVVVIDENFGVRVTEIVSRAERIRSM 373

Query: 136 S 136
            
Sbjct: 374 G 374


>UniRef50_A4IMA6 Flagellar motor switch protein n=8 Tax=Firmicutes
           RepID=A4IMA6_GEOTN
          Length = 393

 Score =  130 bits (327), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 93/147 (63%), Gaps = 13/147 (8%)

Query: 3   DMNNPADDNNGAMDDLWAEALS------------EQKSTSSKSAAETVFQQFGGGD-VSG 49
           +   PA     A D +++ A S            E++S + +      F +F      + 
Sbjct: 247 EEPQPAPAYAHASDGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAAT 306

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
             ++++L+ D+P+++TVELGRT+ +++E+L+L+ GS++ LD LAGEP+DI +N  LIA+G
Sbjct: 307 EARNLELLFDVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKG 366

Query: 110 EVVVVADKYGVRITDIITPSERMRRLS 136
           EVVV+ + +GVRITDI++ ++R++RL 
Sbjct: 367 EVVVIDENFGVRITDIVSQNDRLKRLK 393


>UniRef50_B2S3V9 Flagellar motor switch protein n=2 Tax=Treponema pallidum
           RepID=B2S3V9_TREPS
          Length = 348

 Score =  129 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           M  P      +   +    +      +S S     F             +I LIMD+ ++
Sbjct: 219 MQRPQAQVGNS--QMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFME 276

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +TVELGRTRM IK++L + +G ++ LD LAGEP+DIL+N  LIA+GEVVV+ + +GVR+T
Sbjct: 277 VTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVT 336

Query: 124 DIITPSERM 132
           +I++P ER+
Sbjct: 337 EILSPGERI 345


>UniRef50_A5D0K1 Flagellum motor switch protein n=4 Tax=Bacteria RepID=A5D0K1_PELTS
          Length = 422

 Score =  128 bits (323), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/129 (42%), Positives = 76/129 (58%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVEL 68
            +     + L      EQ+      AA     +      +   + +DLI+DIP+K+TV L
Sbjct: 294 PEPGKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVIL 353

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           GRTR  IK++L LT GSVV L  L  EP+++L+NG L+A GEVVVV + +GVRIT II P
Sbjct: 354 GRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGP 413

Query: 129 SERMRRLSR 137
            ER++ L R
Sbjct: 414 EERLQNLRR 422


>UniRef50_Q2LT02 Flagellar motor switch protein n=2 Tax=Deltaproteobacteria
           RepID=Q2LT02_SYNAS
          Length = 163

 Score =  128 bits (323), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/129 (44%), Positives = 85/129 (65%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
           +DD+N   +D+  E    Q  T     +   F++   G       D+D I+DIP+ L+VE
Sbjct: 35  SDDDNFGWEDVKEELAQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVE 94

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LGR RM I ELL+L QGS++ L  LAGEP+D+ +N  LIA+GEVVVV +K+G+R+TDI++
Sbjct: 95  LGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNEKFGIRLTDIVS 154

Query: 128 PSERMRRLS 136
           P+ER+ +L 
Sbjct: 155 PAERVNKLR 163


>UniRef50_B0THB7 Flagellar motor switch protein flin, putative n=5 Tax=Bacteria
           RepID=B0THB7_HELMI
          Length = 375

 Score =  128 bits (322), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/97 (51%), Positives = 71/97 (73%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
           F             ++ LIMD+P+++TVELG++R TI+++L L  GSV+ LD LAGEP+D
Sbjct: 278 FAPLQPQRSGKDTTNLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVD 337

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           IL+NG LIA+GEVVV+ + +GVRITDI++P ER+  L
Sbjct: 338 ILVNGKLIAKGEVVVIDENFGVRITDIVSPIERIGNL 374


>UniRef50_A6LMJ7 CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae
           RepID=A6LMJ7_THEM4
          Length = 370

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 82/135 (60%), Gaps = 4/135 (2%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGG----DVSGTLQDIDLIMDIP 61
            P        +++    +SE    +  S +   FQ F  G      S   + I  ++DIP
Sbjct: 236 TPQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQSFESGGIVKSTSEIPERIKALLDIP 295

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           + + VELG+T++T+K+++ L+ GS++ LD L GEP+DI++NG LIA+GEVVV+ + +GVR
Sbjct: 296 LNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVR 355

Query: 122 ITDIITPSERMRRLS 136
           IT+I++P ER   L 
Sbjct: 356 ITEIVSPQERFYTLE 370


>UniRef50_B1YI92 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Exiguobacterium RepID=B1YI92_EXIS2
          Length = 376

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 2/136 (1%)

Query: 2   SDMNNPADDNNGAMDDLWAE--ALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           +    P  +   A             ++       +   F QF      G   +I ++ D
Sbjct: 241 TSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQFSEVQQEGPPGNIGMLYD 300

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +P+ +TVELGRTR +++++L LTQGS++ LD LAGEP+D+ +N  LIA GEVVV+ + +G
Sbjct: 301 VPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVNNTLIATGEVVVIEENFG 360

Query: 120 VRITDIITPSERMRRL 135
           VRIT+I+   ER+R  
Sbjct: 361 VRITEIVNTKERLRMF 376


>UniRef50_B8FTQ8 CheC, inhibitor of MCP methylation / FliN fusion protein n=4
           Tax=Bacteria RepID=B8FTQ8_DESHD
          Length = 417

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 72/107 (67%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
                      F     GD     ++++LI+D+P++++VELG+ + TIKE+L L  GSV+
Sbjct: 306 GVPPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVI 365

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
            LD LAGEP+D+++NG LIA+ EVVV+ + +G+RITDI+ P ERM +
Sbjct: 366 ELDRLAGEPVDMIVNGKLIAKCEVVVINETFGIRITDIVQPGERMTK 412


>UniRef50_D2LSG7 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Bacillus cellulosilyticus DSM 2522
           RepID=D2LSG7_BACS4
          Length = 398

 Score =  125 bits (315), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 2/135 (1%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGD-VSGTLQDIDLIMDI 60
             M +  + +  A  +    +   +    S       F  F      +   +++D+++DI
Sbjct: 265 PQM-DATNQHQSARQEPQFVSNGSRLPDRSAEVQPAAFSNFETPQLGNNEAKNLDMLLDI 323

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+++TVELGRT+ +IK++L LTQGS++ LD LAGEP+DIL+N  LIA+GEVVV+ + +GV
Sbjct: 324 PLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGV 383

Query: 121 RITDIITPSERMRRL 135
           R+TDI++  ER+  L
Sbjct: 384 RVTDIVSKRERLNNL 398


>UniRef50_C1TKI4 Flagellar motor switch protein FliN n=1 Tax=Dethiosulfovibrio
           peptidovorans DSM 11002 RepID=C1TKI4_9BACT
          Length = 384

 Score =  125 bits (315), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 4/136 (2%)

Query: 5   NNPADDNNGAMDDLWAEALSEQ---KSTSSKSAAETVFQQFGGGDVSGT-LQDIDLIMDI 60
             PA              +S+    +++         F       V  +   +I LI DI
Sbjct: 248 QRPAQQQAPRPSGGGGAGMSQPPSGEASPPVDVRPAQFSPLQPAAVDSSLPSNIGLIADI 307

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PV++TVELGRTR ++ E+L    GSV+ LD +AGEP+D+L+NG LIA+GEVVV+ + +GV
Sbjct: 308 PVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDENFGV 367

Query: 121 RITDIITPSERMRRLS 136
           R+T+I+   E+++ + 
Sbjct: 368 RVTEILNVGEKIQSIG 383


>UniRef50_P35539 Flagellar motor switch protein fliN (Fragment) n=77
           Tax=Proteobacteria RepID=FLIN_PECCC
          Length = 106

 Score =  124 bits (313), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 89/106 (83%), Positives = 95/106 (89%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           +   E +F+   G D  G LQDIDLI+DIPVKLTVELGRT+MTIKELLRLTQGSVVALDG
Sbjct: 1   RPTTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDG 60

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           LAGEPLDILINGYLIAQGEVVVV+DKYGVRITDIITPSERMRRLSR
Sbjct: 61  LAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLSR 106


>UniRef50_Q47I10 Type III secretion system outer membrane O protein n=57
           Tax=Proteobacteria RepID=Q47I10_DECAR
          Length = 147

 Score =  124 bits (313), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/139 (51%), Positives = 100/139 (71%), Gaps = 5/139 (3%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQ-----FGGGDVSGTLQDIDLIM 58
            + P +D+    +D WA A+SEQ  + + +A             G    +G + ++D+I+
Sbjct: 9   ESTPVEDDGQISEDDWAAAMSEQAISDAPAAMAAQPADIFPSFGGNAGNAGMMNELDMIL 68

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
           DIPV++TVELGRT++TIK LL+L  GSVV LD +AGEP+D+++NG LIAQGEVVVV DK+
Sbjct: 69  DIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVNDKF 128

Query: 119 GVRITDIITPSERMRRLSR 137
           G+R+TDIITPSERMR+L+R
Sbjct: 129 GIRLTDIITPSERMRKLNR 147


>UniRef50_C5VT98 Flagellar motor switch phosphatase FliY n=1 Tax=Clostridium
           botulinum D str. 1873 RepID=C5VT98_CLOBO
          Length = 394

 Score =  124 bits (312), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 85/135 (62%), Gaps = 2/135 (1%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           ++ M N    +N  ++    E  +  KS    +  +  F      +++G  Q+IDLI+D+
Sbjct: 260 INKMQNQETSSNSQVEPKPVETYT--KSQPQVNIQKASFAPLQESNINGAPQNIDLILDV 317

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P++++V LG+T+ +IK++L L  GS++ LD LA EP++I +NG  IA GEVVVV + +GV
Sbjct: 318 PLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGV 377

Query: 121 RITDIITPSERMRRL 135
           RI +I++  ER++ L
Sbjct: 378 RIVNIVSGEERVKSL 392


>UniRef50_Q0AYM4 CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes
           RepID=Q0AYM4_SYNWW
          Length = 398

 Score =  124 bits (311), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/119 (42%), Positives = 81/119 (68%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
             + ++  E  +    +     F      ++  + Q++DLIMD+P+ ++VELG+T+ TI 
Sbjct: 279 QAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDVPLDVSVELGKTKKTIG 338

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           E+L L QG+++ LD LAGEP+D+L+NG LIA+GEVVV+ + YG+RIT II+P +RM +L
Sbjct: 339 EILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDRMNKL 397


>UniRef50_A8F896 Flagellar motor switch protein FliN n=3 Tax=Thermotoga
           RepID=A8F896_THELT
          Length = 343

 Score =  123 bits (310), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 6/110 (5%)

Query: 34  AAETVFQQFGGGD------VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
                FQ+F           S     ++L++D+P+K+ VELGR +MT+K++L +  GS++
Sbjct: 230 VQPVQFQEFDQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLI 289

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
            LD L GEP+DIL+NG LIA+GEVVVV + +GVRIT+I+TP +R+  +  
Sbjct: 290 ELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRIYSIRE 339


>UniRef50_C0R179 Flagellar motor switch protein n=2 Tax=Brachyspira
           RepID=C0R179_BRAHW
          Length = 360

 Score =  123 bits (308), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 68/111 (61%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
            S          F             +I L+MD+ + +TVELGR  MTI+++L L +GS+
Sbjct: 250 DSGPQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSI 309

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           + L  LAGEP+D+L+NG LIA+GEVVV+ + +GVR+TDII P +R+    R
Sbjct: 310 IELQKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIINPMDRLTNKPR 360


>UniRef50_Q2NX05 Flagellar motor switch protein FliN n=5 Tax=Enterobacteriaceae
           RepID=Q2NX05_SODGM
          Length = 134

 Score =  123 bits (308), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTV 66
                G    L          T+  + +   F      +  S   +D+ LI+DIPVK+TV
Sbjct: 4   TPHTPGDEAPLHETDGQSLGDTACPAPSRPEFPPASTTEGGSPLTEDLSLILDIPVKMTV 63

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           ELGRTRMTI+ELL L+Q +VV L+G AGEPLDILINGYLIA+GEVVV+ ++YGVRI DI+
Sbjct: 64  ELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGEQYGVRIADIV 123

Query: 127 TPSERMRRLSR 137
           TP+ERMRRLSR
Sbjct: 124 TPAERMRRLSR 134


>UniRef50_A6TRP4 CheC, inhibitor of MCP methylation n=11 Tax=Clostridia
           RepID=A6TRP4_ALKMQ
          Length = 393

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 76/135 (56%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           ++   +    +    D    +        S  +     FQ F      G  ++I LI D+
Sbjct: 259 ITQEKSNQQPHLSDHDAPVQQRQQPSLENSKINVQPVQFQSFDQQSNRGLPENIALIQDV 318

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+ +TVELGRT   I E+L    G+++ L+ + GEPLDIL+NG  +A+GEVVV+ + YG+
Sbjct: 319 PLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGI 378

Query: 121 RITDIITPSERMRRL 135
           RITDI+ P++R+ ++
Sbjct: 379 RITDIVAPAKRLSKI 393


>UniRef50_C9R9W6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Ammonifex degensii KC4 RepID=C9R9W6_AMMDK
          Length = 360

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/127 (41%), Positives = 80/127 (62%)

Query: 11  NNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
                +  ++E  S  +  ++ +A            +      ++LI+DIP+K++V LGR
Sbjct: 230 EEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRLELILDIPLKVSVVLGR 289

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           TR  IKE+L L  GS++ LD LA EP++IL+NG L+A+GEVVVV + +GVRIT I+TP E
Sbjct: 290 TRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEENFGVRITSIVTPQE 349

Query: 131 RMRRLSR 137
           R+R L+R
Sbjct: 350 RLRYLAR 356


>UniRef50_B5Y7F0 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) n=1
           Tax=Coprothermobacter proteolyticus DSM 5265
           RepID=B5Y7F0_COPPD
          Length = 287

 Score =  122 bits (306), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 5/132 (3%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           SD++  AD  +  ++   A  + E                   GD+    ++++L++D+ 
Sbjct: 158 SDVSERADAVSSEVEKTSASVMQENDVEDVTFPQLRP-----EGDIQPLPRNLELLLDVK 212

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V ++VELGR+R++IK+LL L  GS++ LD LAGEP+DIL+NG  IA+GEVVV+ + +GVR
Sbjct: 213 VNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDESFGVR 272

Query: 122 ITDIITPSERMR 133
           I DII P ER++
Sbjct: 273 ILDIIAPKERLK 284


>UniRef50_Q31FQ0 Flagellar motor switch protein FliN n=5 Tax=Gammaproteobacteria
           RepID=Q31FQ0_THICR
          Length = 153

 Score =  121 bits (305), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/139 (45%), Positives = 91/139 (65%), Gaps = 5/139 (3%)

Query: 3   DMNNPADDNNGAMDDLWAEALSEQKST----SSKSAAETVFQQFGGGD-VSGTLQDIDLI 57
           D    A+ ++ A DD W  ALSEQ +     +S       F     G   S    D+D++
Sbjct: 15  DEQAEAEGSDAAGDDPWGAALSEQAAETSSNNSDEIDAASFDALEKGRGDSSEKVDLDVL 74

Query: 58  MDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADK 117
           +DIPV L +E+GR +++I+ LL  TQGSV+ +D LAGEPLD+L+NG LIA GEVVV+ DK
Sbjct: 75  LDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVINDK 134

Query: 118 YGVRITDIITPSERMRRLS 136
           +GVR+TD+++P ER+++L 
Sbjct: 135 FGVRLTDVVSPQERIKKLK 153


>UniRef50_C8WWF9 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WWF9_ALIAD
          Length = 381

 Score =  121 bits (305), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQ---DIDLIMDIPVKL 64
           A+      DD  A     +    S +     F  F  G      +   ++ L+ D+P+ +
Sbjct: 250 AEARGKNRDDAQAANRGREDEGPSVAVRRPAFPDFDEGVTPRDARPVANLSLLYDVPLNV 309

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           TVELGR +  I+E+L L  GS++ LD LAGEP+DI +N   IA GEVVV+ + +GVR+TD
Sbjct: 310 TVELGRAKKLIREILELAPGSILELDKLAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTD 369

Query: 125 IITPSERMRRL 135
           I+   +R+  L
Sbjct: 370 IVQADKRIDPL 380


>UniRef50_A8U602 Flagellar motor switch protein n=5 Tax=Lactobacillales
           RepID=A8U602_9LACT
          Length = 360

 Score =  121 bits (304), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 76/128 (59%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVEL 68
                      A     Q++       +  FQ+        T +++DLIMD+P++ +V L
Sbjct: 233 QAEEMTAPIAPAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNLDLIMDVPLQFSVML 292

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           G ++ TIK++L L  GSVV L+ +  EPL+I +NG LIA+GEVVV+ + +G+RIT+I++ 
Sbjct: 293 GESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVINESFGIRITNILSK 352

Query: 129 SERMRRLS 136
            +R++ L+
Sbjct: 353 EQRIKHLN 360


>UniRef50_B8CYQ5 CheC, inhibitor of MCP methylation n=1 Tax=Halothermothrix orenii H
           168 RepID=B8CYQ5_HALOH
          Length = 375

 Score =  121 bits (303), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 79/124 (63%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRT 71
           +     +   A        +       F  F  G+ +   Q+++LI D+P+++TV LG+T
Sbjct: 252 STTGQPVSGSANRVSAGEENVDVKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKT 311

Query: 72  RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
           RMTIK++L L +GS+V L+ LAGEP+D+L+NG LIA+GEVVV+ + +G R+ DII+P ER
Sbjct: 312 RMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDENFGFRVKDIISPMER 371

Query: 132 MRRL 135
           +  +
Sbjct: 372 LNNI 375


>UniRef50_C0ZF88 Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZF88_BREBN
          Length = 455

 Score =  121 bits (303), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 27  KSTSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
            + +  +     F   GG  + +G +Q+++L+ DIP+++TVELGRT+  I+E+L L+ GS
Sbjct: 345 PAANQANVVPAQFAPLGGAPMYTGDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGS 404

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           ++ LD LAGE +DIL+N  LIA+GEVVV+ + +GVR+TDII+  +R+++L
Sbjct: 405 IIQLDKLAGEHVDILVNNKLIAKGEVVVIDENFGVRVTDIISQIDRVQKL 454


>UniRef50_P24073 Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria
           RepID=FLIY_BACSU
          Length = 378

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 1/135 (0%)

Query: 3   DMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTL-QDIDLIMDIP 61
           +   P             +     K  +    +   F  F   +       ++D+++DIP
Sbjct: 244 EPVTPEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPNEAVQAPIHNLDMLLDIP 303

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           + +TVELGRT+ ++KE+L L+ GS++ LD LAGEP+DIL+N  ++A+GEVVV+ + +GVR
Sbjct: 304 LSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVR 363

Query: 122 ITDIITPSERMRRLS 136
           +TDI++ +ER+  L 
Sbjct: 364 VTDILSQAERINNLK 378


>UniRef50_A3DCN7 CheC, inhibitor of MCP methylation n=2 Tax=Clostridium thermocellum
           RepID=A3DCN7_CLOTH
          Length = 406

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 30  SSKSAAETVFQQFGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVA 88
           +  +     F+ F  G  +S   ++I LIMD+P+++TVELGRT   IK++L    GS++ 
Sbjct: 303 NPINVQPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIE 362

Query: 89  LDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           LD LAGEP+DIL+NG +IA GEVVV+ + +GVRITDI+ PS+R+
Sbjct: 363 LDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPSKRL 406


>UniRef50_A5IJA7 CheC, inhibitor of MCP methylation n=5 Tax=Thermotogaceae
           RepID=A5IJA7_THEP1
          Length = 346

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/101 (46%), Positives = 71/101 (70%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
              +             ++L++DIP+++TVELGRTRMT+K +L +  GS++ LD L GEP
Sbjct: 246 AELKPSETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEP 305

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +DIL+NG LIA+GEVVV+ + +GVRIT+I++P ER+  L+ 
Sbjct: 306 VDILVNGKLIARGEVVVIDENFGVRITEIVSPKERLELLNE 346


>UniRef50_B2A359 CheC, inhibitor of MCP methylation / FliN fusion protein n=5
           Tax=Bacteria RepID=B2A359_NATTJ
          Length = 422

 Score =  120 bits (301), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 2/129 (1%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFG--GGDVSGTLQDIDLIMDIPVKLTV 66
           + +         E   +Q+    K      F           G   +I+LIMD+P+++TV
Sbjct: 293 EVSTQGQPTGQGEQQMKQEQQPKKDYQPVEFSPLEGHQSAAKGENSNIELIMDVPLEVTV 352

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           ELG+T+  I+E+L L  GS++ LD +AGEP+DI +NG LIA+GEVVV+ + +G+RIT+II
Sbjct: 353 ELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDENFGIRITEII 412

Query: 127 TPSERMRRL 135
           +P ER+ +L
Sbjct: 413 SPVERINKL 421


>UniRef50_A4J737 CheC, inhibitor of MCP methylation n=1 Tax=Desulfotomaculum
           reducens MI-1 RepID=A4J737_DESRM
          Length = 411

 Score =  119 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 83/127 (65%)

Query: 11  NNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGR 70
           ++   D+L    + E     + +              S   +++DLI+DIP+K++V LGR
Sbjct: 283 DDRESDELAGIMMQETAPPPTPAMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGR 342

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           T+  IK++L++  GSVV LD LA EP+DIL+NG L+A GEVVVV + +G+RIT+II+P E
Sbjct: 343 TKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPME 402

Query: 131 RMRRLSR 137
           R++RLS+
Sbjct: 403 RVKRLSK 409


>UniRef50_Q6MI47 Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria
           RepID=Q6MI47_BDEBA
          Length = 122

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/116 (45%), Positives = 83/116 (71%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
           + L++Q    +   AE+  ++      +   +++ LI+DIP+K++VELGRT+M + ELL 
Sbjct: 7   DNLADQLVAEAAGMAESSGRKASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSELLN 66

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           LTQGSV+ L  LAGEP+++ +N  LIA+GE VVV +K+GVR+TDII+P+ER+ +L 
Sbjct: 67  LTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPAERVEQLR 122


>UniRef50_B0K9T5 CheC, inhibitor of MCP methylation / FliN fusion protein n=5
           Tax=Thermoanaerobacterales RepID=B0K9T5_THEP3
          Length = 375

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 73/111 (65%)

Query: 26  QKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           ++  +        F +          +++DLI+D+P+ +TVELG+T+  IK++L L++GS
Sbjct: 265 EQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGS 324

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           ++ LD LAGEP+DIL NG  IA+GEVVV+ + +GVRI DI+  S+R+  + 
Sbjct: 325 IIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRISNIE 375


>UniRef50_C1I888 Flagellar switch protein FliY n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I888_9CLOT
          Length = 370

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/108 (43%), Positives = 74/108 (68%)

Query: 29  TSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVA 88
                     F+    G V  + ++IDLI+D+P++++V LGRT+ +IK++L L+ GS++ 
Sbjct: 263 EKPVEVHGATFEPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIE 322

Query: 89  LDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           LD LA EP+++LING  IA GEVVVV + +GVRIT I++ ++R+R L 
Sbjct: 323 LDKLAEEPVEVLINGKKIAYGEVVVVDENFGVRITSIVSGADRIRTLK 370


>UniRef50_D1C1A4 Flagellar motor switch protein FliN n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C1A4_SPHTD
          Length = 144

 Score =  118 bits (297), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/112 (44%), Positives = 67/112 (59%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
            A  EQ    + S     F        SG  Q I+ + D+ V+LT ELG  RM IK +L 
Sbjct: 30  AAPGEQAGGEAASVHPAAFMALSQETQSGGPQSIEFLRDVEVELTAELGTARMQIKHILG 89

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           L  GSVV L+ LAGEP+DI++N  LIA+GEVVVV +K+ VR+ +I+ P  R+
Sbjct: 90  LRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDEKFAVRVVEIVPPERRL 141


>UniRef50_Q3SIG7 Flagellar motor switch/type III secretory pathway protein FliN n=17
           Tax=Proteobacteria RepID=Q3SIG7_THIDA
          Length = 132

 Score =  118 bits (297), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 96/130 (73%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
            D      +D WA A++EQ + ++  A E   +  G    +G   DID I+DIPV LTVE
Sbjct: 3   EDTTQTIAEDDWAAAMAEQAAPAAAPAPEIFKEFSGSASSTGLANDIDFILDIPVLLTVE 62

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LGRT++ IK LL+L QGSVV LDGLAGEP+D+L+NG LIAQGEVVVV DK+GVR+TDIIT
Sbjct: 63  LGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGVRLTDIIT 122

Query: 128 PSERMRRLSR 137
           P+ER+R+L++
Sbjct: 123 PAERIRKLNK 132


>UniRef50_A6M1D2 CheC, inhibitor of MCP methylation n=24 Tax=Clostridium
           RepID=A6M1D2_CLOB8
          Length = 398

 Score =  118 bits (296), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/107 (41%), Positives = 72/107 (67%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
                    F+     +    +++IDLI+D+P+ ++V LGRT+ +I+++L L  GS++ L
Sbjct: 292 QPVEVHAATFEPLMPQNSVPPIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIEL 351

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           D LA EP++IL+NG  IA GEVVVV + +G+RIT+I++  ER++RL 
Sbjct: 352 DKLAEEPVEILVNGKQIALGEVVVVDENFGIRITNIVSSVERIKRLK 398


>UniRef50_Q0AEF2 Flagellar motor switch protein FliN n=12 Tax=Proteobacteria
           RepID=Q0AEF2_NITEC
          Length = 157

 Score =  118 bits (296), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/111 (61%), Positives = 90/111 (81%), Gaps = 1/111 (0%)

Query: 28  STSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
                +   +VF+QF   +V + T  DID+I+DIPV+LTVELGRTR+ IK LL+L QGSV
Sbjct: 47  PDEDLTKPSSVFEQFSRNNVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSV 106

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           + LDG+AGEP+D+L+NG LIAQGEVVVV +K+G+R+TDIITPSER+R+L+R
Sbjct: 107 IELDGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRKLNR 157


>UniRef50_C8W1I6 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W1I6_DESAS
          Length = 572

 Score =  118 bits (295), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 78/128 (60%), Gaps = 3/128 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
               N   ++L   A   Q  T  +S  E   ++            I+LI+D+P+ +TV 
Sbjct: 445 EPVTNKPPENLSPMAAGGQNQTGYQSVPE---ERVSQTPADVNWDKINLILDVPLNVTVV 501

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LG+T+  IK++L LT GSVV L  L  EP+++L+NG L+A+GEVVVV + +GVRIT++IT
Sbjct: 502 LGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVARGEVVVVNENFGVRITNVIT 561

Query: 128 PSERMRRL 135
           P ER++ L
Sbjct: 562 PQERIQYL 569


>UniRef50_A9BEY5 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BEY5_PETMO
          Length = 372

 Score =  117 bits (294), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKL 64
           +     N          + ++K    +      F++          L  ++L++D+P++L
Sbjct: 241 DEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVPLEL 300

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            VELG T++ ++E+L L +GS++ L+ LAGEPLDI  NG LIA+GEVVV+ + +G+R+T+
Sbjct: 301 KVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIRVTE 360

Query: 125 IITPSERMRRLS 136
           I++  ERM+ L 
Sbjct: 361 IVSLRERMKTLK 372


>UniRef50_B5YIZ3 Flagellar motor switch protein FliN n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YIZ3_THEYD
          Length = 139

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/120 (45%), Positives = 83/120 (69%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
           D+      E+   + +        +F   +     +DID I+DIP++L V +GRTR+ ++
Sbjct: 20  DMAKALEMEKAMKAKEEVQSPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRILVQ 79

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           ELL+LTQGSVVALD LAGEP+++ +NG L+ +GEVVVV +K+G+RITDII+P ER+++L 
Sbjct: 80  ELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNEKFGIRITDIISPQERVKQLG 139


>UniRef50_C6BUR6 Flagellar motor switch protein FliN n=21 Tax=Proteobacteria
           RepID=C6BUR6_DESAD
          Length = 229

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 14/132 (10%)

Query: 19  WAEALSEQKSTSSKSAAETVF--------------QQFGGGDVSGTLQDIDLIMDIPVKL 64
           WA AL+E      +   E  F               +       G+ +D+D I+DIP+ +
Sbjct: 98  WAAALAEDTGDDIRKEKEQEFLRTQTRDADFKDLTNEAKNPRHDGSRRDLDFILDIPLDV 157

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           + ELGR +M I ELL+L  GSVV L  LAGEPL+I +NG L+A+GE VV+ +K+G+R+TD
Sbjct: 158 SAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINEKFGIRLTD 217

Query: 125 IITPSERMRRLS 136
           II+P ER++ L+
Sbjct: 218 IISPIERVKHLA 229


>UniRef50_Q51466 Flagellar motor switch protein fliN n=23 Tax=Proteobacteria
           RepID=FLIN_PSEAE
          Length = 157

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/129 (41%), Positives = 82/129 (63%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
           + D+  A+          + ST      E                ++D+I+DIPV +++E
Sbjct: 29  SQDDIDALMAQGGATPVAEPSTPRAPMEEFGASPKAPTISGLEGPNLDVILDIPVTISME 88

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           +G T ++I+ LL+L QGSV+ LD LAGEPLD+L+NG LIA GEVVVV +K+G+R+TD+I+
Sbjct: 89  VGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVIS 148

Query: 128 PSERMRRLS 136
           PSER+++L 
Sbjct: 149 PSERIKKLR 157


>UniRef50_A6W8L1 Flagellar motor switch protein FliN n=1 Tax=Kineococcus
           radiotolerans SRS30216 RepID=A6W8L1_KINRD
          Length = 249

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/130 (40%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 1   MSDMNN-PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           +S + +      +   + L    L+      +  A    F   G    +G  + +DL+ D
Sbjct: 117 LSQIADGAVAVIDAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRD 176

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           + + +TVELGRT MT+++LL LT GSVV LD  AG P D+L+NG LIA+GEVVVV + Y 
Sbjct: 177 VQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYA 236

Query: 120 VRITDIITPS 129
           +RIT+I+TP 
Sbjct: 237 IRITEIVTPE 246


>UniRef50_C4ZAN3 Flagellar motor switch protein n=2 Tax=Clostridiales
           RepID=C4ZAN3_EUBR3
          Length = 404

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 17  DLWAEALSEQKS-TSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKLTVELGRTRMT 74
            +  + +  Q    +  +     F  FG         ++IDLIMD+P+++TVELGRT+ +
Sbjct: 283 GMMNQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKS 342

Query: 75  IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           I E+L    G ++ L+ LAGEP+DIL+NG  +A+GEVVV+ + +GVRIT+I+   
Sbjct: 343 ISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397


>UniRef50_B8FK37 Flagellar motor switch protein FliN n=3 Tax=Bacteria
           RepID=B8FK37_DESAA
          Length = 119

 Score =  115 bits (289), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/119 (47%), Positives = 81/119 (68%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           +  EAL ++ + +  +   T      G   +    D+D I+DIP+ +TVELGRT M IK+
Sbjct: 1   MEEEALQQEMNENLPAENMTDGLPAAGDADADGDGDLDFILDIPLDITVELGRTSMRIKD 60

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           LL+L QG+VV L  LAGEP++I +NG L A+GEVVVV +K+GVR+TDI++P ER++ L 
Sbjct: 61  LLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVVVNEKFGVRLTDIVSPQERIKSLR 119


>UniRef50_B0MPD4 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM
           15702 RepID=B0MPD4_9FIRM
          Length = 419

 Score =  115 bits (289), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 77/115 (66%), Gaps = 1/115 (0%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +  Q + + ++A    F+ F     S   +++ L+MD+P++++VE+G T+  IK++L  +
Sbjct: 304 MQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFS 363

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           QG+++ L+  AG P+D+++NG LIA+G+VVV+ D + VRIT+I+  S+ M  L +
Sbjct: 364 QGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIV-KSKFMDSLGK 417


>UniRef50_A1WGY8 Flagellar motor switch protein FliN n=19 Tax=Proteobacteria
           RepID=A1WGY8_VEREI
          Length = 163

 Score =  115 bits (289), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/148 (49%), Positives = 96/148 (64%), Gaps = 17/148 (11%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGT---------------- 50
           PAD+      + WAEAL EQK +    A         G  V                   
Sbjct: 15  PADNAADDPFNGWAEALKEQKRSDEPPAEGQQGGPLSGEPVRPPLAGAASGASAVNGGEQ 74

Query: 51  -LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
            + DI+ ++DIPV+L+VELGRT++ IK +L+L QGSVV LD LAGEP+D+L+NGYLIAQG
Sbjct: 75  VINDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQG 134

Query: 110 EVVVVADKYGVRITDIITPSERMRRLSR 137
           EVVVV DK+G+R+TD++TPSER+RR+SR
Sbjct: 135 EVVVVNDKFGIRLTDVVTPSERLRRVSR 162


>UniRef50_B9PA59 Predicted protein n=2 Tax=cellular organisms RepID=B9PA59_POPTR
          Length = 284

 Score =  115 bits (288), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 70/90 (77%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
             S   + ID ++D+P+ ++V +G  RM IK+LL+L QGSVV LD LAGEP++ILIN  L
Sbjct: 195 RTSEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKL 254

Query: 106 IAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +A+GEVV+V DKYGVR+TDI++P ER++ L
Sbjct: 255 VARGEVVMVNDKYGVRLTDIVSPIERIKSL 284


>UniRef50_C4G689 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G689_ABIDE
          Length = 370

 Score =  114 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 13  GAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVS-GTLQDIDLIMDIPVKLTVELGRT 71
                      +    +   + A   FQ F          ++I LIMD+P+++TVELGRT
Sbjct: 255 QPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELGRT 314

Query: 72  RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
             TIKE+L  + G+++ L+ LAGE +D+L+NG  +A+GEVVV+ D +G+RIT+I+
Sbjct: 315 NKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369


>UniRef50_Q3BU42 Flagellar motor switch/type III secretory pathway protein FliN n=9
           Tax=Xanthomonas RepID=Q3BU42_XANC5
          Length = 112

 Score =  113 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/104 (48%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 34  AAETVFQQFGGGDVSGTLQ-DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92
           A+   F              ++D+I+D+PV L++E+GR R+ I+ LL+L QGSVV L+  
Sbjct: 9   ASPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERG 68

Query: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           AGEPLD+ +NG LIA GEVVV+ D++G+R+TD+++PSER+RRL 
Sbjct: 69  AGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRLR 112


>UniRef50_C4Z5H2 Flagellar motor switch protein FliN/FliY n=3 Tax=Bacteria
           RepID=C4Z5H2_EUBE2
          Length = 437

 Score =  113 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 3/118 (2%)

Query: 12  NGAMDDLWAEALSEQ--KSTSSKSAAETVFQQFGGGDVS-GTLQDIDLIMDIPVKLTVEL 68
              M  +  + +  Q        + A   FQ F          ++I+LI D+P+++TVEL
Sbjct: 319 GMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDVNPISQKENIELIKDVPLEVTVEL 378

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           GRT  +IK++L    G++V L+ +AGE +D+L+NG  +A+GEVVV+ + +GVRIT+II
Sbjct: 379 GRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFGVRITEII 436


>UniRef50_C7R0I7 Flagellar motor switch protein FliN n=1 Tax=Jonesia denitrificans
           DSM 20603 RepID=C7R0I7_JONDD
          Length = 259

 Score =  113 bits (283), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQD--IDLIMDIPVKLTV 66
           +D         A A + Q   S+ S  E   + F    +     D  + L+ D+ + LTV
Sbjct: 133 EDVPVEKPSPAASARTAQAEPSAPSPTEPEIRPFTPPMMGSGTGDDKLRLLYDVEMTLTV 192

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           E+GR ++ ++++L LT GS+V LD +AG P D+L+NG+L+A+GEVVVV + YG+R+T+II
Sbjct: 193 EIGRAKLPVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEII 252

Query: 127 TPSERMR 133
             +E   
Sbjct: 253 DTTEVFS 259


>UniRef50_Q30VB8 Surface presentation of antigens (SPOA) protein n=4
           Tax=Deltaproteobacteria RepID=Q30VB8_DESDG
          Length = 175

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/97 (50%), Positives = 73/97 (75%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           ++          +++D I+DIP+ ++ ELGRTR+ I ELL+L QGSVV L+ LAGEPL+I
Sbjct: 79  EEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEI 138

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            +NG L+A+GE VV+ +K+GVR+TDII+P ER+++L 
Sbjct: 139 YVNGKLVARGEAVVINEKFGVRLTDIISPIERVKQLG 175


>UniRef50_B0P9X9 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P9X9_9FIRM
          Length = 446

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFG--GGDVSGTLQDIDLIMDIPVKLTVELGRTRM 73
              +     +  +    +   T F QF     D   +  ++DL+M + + ++VE+G+T+ 
Sbjct: 320 QQAYGMQEPQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKR 379

Query: 74  TIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133
            IK+++   QG+V+ L+  AG P+DI++NG L+A+G+VVV+ D +GVRIT+I+   E M 
Sbjct: 380 KIKDIIDFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELME 439

Query: 134 RLSR 137
            L  
Sbjct: 440 SLKE 443


>UniRef50_Q6AJS8 Probable flagellar motor switch protein (FliN) n=1 Tax=Desulfotalea
           psychrophila RepID=Q6AJS8_DESPS
          Length = 123

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 72/98 (73%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           +Q      +   + +D + D+P++++VE+GR+++ IK+LL + +G V+ L+ +AG+PLD+
Sbjct: 26  EQEHTTLENNEARSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDL 85

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
            +N  LIA+GE V++ DK+G+R+TD+++ S+R+ RL +
Sbjct: 86  YVNSRLIARGEAVMIGDKFGIRLTDVVSASDRLERLGK 123


>UniRef50_A9KNE6 CheC, inhibitor of MCP methylation / FliN fusion protein n=2
           Tax=Bacteria RepID=A9KNE6_CLOPH
          Length = 401

 Score =  111 bits (279), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 1/109 (0%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSG-TLQDIDLIMDIPVKLTVELGRTRMTIKE 77
            +     Q    + + A   FQ F          ++IDL++D+P+++TVELGRT  +I+E
Sbjct: 292 MSMQQVPQGMVQNVNIAPAQFQPFVNTGSPLLQTENIDLLLDVPLEVTVELGRTSKSIRE 351

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           +L    G++V L+ LAGEP+D+L+NG  +A+GEVVV+ + +G+R+TDII
Sbjct: 352 ILDFAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDII 400


>UniRef50_Q2RKB6 CheC, inhibitor of MCP methylation n=1 Tax=Moorella thermoacetica
           ATCC 39073 RepID=Q2RKB6_MOOTA
          Length = 395

 Score =  111 bits (277), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 60/90 (66%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
             + ++IDLI+D+P+ + V LG     I+++L L  G++V LD L  EP+ I +NG  IA
Sbjct: 306 GASSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIA 365

Query: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137
           QGEVV+V + +GVRIT I+ P ER+  L +
Sbjct: 366 QGEVVIVNENFGVRITHILEPYERINHLRQ 395


>UniRef50_Q0AA08 Flagellar motor switch protein FliN n=49 Tax=cellular organisms
           RepID=Q0AA08_ALHEH
          Length = 226

 Score =  111 bits (277), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 88/132 (66%), Gaps = 2/132 (1%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVS--GTLQDIDLIMDIPVKL 64
           P + + G      A     Q++  ++ A     +   G   +      ++D+IMDIPV L
Sbjct: 95  PEEPSAGQRAATEARETQRQENWQAERAELDELEPDAGAGRNLGDEEANLDVIMDIPVTL 154

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           ++E+GRT+++I+ LL+L QGSVV LD LAGEPLD+++NG LIA GEVVVV +++G+R+TD
Sbjct: 155 SMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNERFGIRLTD 214

Query: 125 IITPSERMRRLS 136
           +I+ +ER+++L 
Sbjct: 215 VISAAERVKKLR 226


>UniRef50_B4U6V5 Flagellar motor switch protein FliN n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U6V5_HYDS0
          Length = 149

 Score =  110 bits (276), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLT 65
            P   N+  +  LW EA+  Q  T S +       Q          +D+  I+DIP+ +T
Sbjct: 22  EPTPQNDEDLMKLWEEAIQAQAQTESSAEN-----QQAQATTQDISKDLQRILDIPLSIT 76

Query: 66  VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           V +G T +TIKELL L  GSV+ALD      + +  NG LIA+ E+VVV + +G+RI +I
Sbjct: 77  VVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEI 136

Query: 126 ITPSERMRRLS 136
           I   ER++ L+
Sbjct: 137 IEKEERVKSLA 147


>UniRef50_A7GZX6 Iron chelatin ABC transporter, substrate binding protein n=20
           Tax=Campylobacter RepID=A7GZX6_CAMC5
          Length = 286

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
            D       +      SE +S     A      +F        +++I+LIMD+ + + V 
Sbjct: 162 CDHTLMKFFEPTKVGESESQSGDQAKATHGSRSEFSA----EEMRNINLIMDVRLPIRVR 217

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           +G  RM +K++L +  GSV+ L+ LA +PL+ILI   +IA GEVV++   +G++IT I +
Sbjct: 218 IGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQIGS 277

Query: 128 PSERMRRLS 136
             ER+++L 
Sbjct: 278 KRERLQQLK 286


>UniRef50_Q1NP93 Surface presentation of antigens (SPOA) protein n=2
           Tax=Deltaproteobacteria RepID=Q1NP93_9DELT
          Length = 136

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 83/136 (61%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           M+D            D   A A   + S + +    +     GG   S + Q++D ++D+
Sbjct: 1   MADEEKNQATEEAGDDWSAALADQGKDSPAFEELEASGAAGGGGAAPSASTQNLDFLLDV 60

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+++TVELGRT M I +LL+LTQGSVV LD  AG  ++I +N  L+ +GEVVVV +++G+
Sbjct: 61  PLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNERFGI 120

Query: 121 RITDIITPSERMRRLS 136
           R+T+II+ ++R++ + 
Sbjct: 121 RVTEIISQADRIKSIG 136


>UniRef50_Q67K24 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67K24_SYMTH
          Length = 126

 Score =  109 bits (274), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
            AL  Q     +      F          G    + L+ D+ ++LTVELG++R +++E+L
Sbjct: 12  AALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREIL 71

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
            +  GSV+ LD  AGE +D+L+NG L+A+GEVVV+ + YG+RIT++I P 
Sbjct: 72  AMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINPE 121


>UniRef50_B9L5A1 Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) n=1
           Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5A1_THERP
          Length = 128

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 66/121 (54%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRT 71
               D L                 E  F       +    Q ID + D+ V+LT ELG  
Sbjct: 2   ADRDDTLNRGQEPSSVRPPETPIQEARFVDLRDQPIGNGRQGIDFLRDVEVELTAELGSA 61

Query: 72  RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
           RM IK +L L  GSVV LD LAGEP+++ IN  LIA+GEVVVV +K+ VRIT+I++P +R
Sbjct: 62  RMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDEKFAVRITEIVSPEKR 121

Query: 132 M 132
           +
Sbjct: 122 L 122


>UniRef50_C1SNF8 Flagellar motor switch protein FliN n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SNF8_9BACT
          Length = 299

 Score =  109 bits (273), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 72/106 (67%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
            +   E     FGGG   G+  ++DL++DI V ++V++G T+M +K++L +  G+++ LD
Sbjct: 193 PEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELD 252

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
             A EP++++IN  +IA+GEVV+V   +G RI +I++ +ER+++L 
Sbjct: 253 ESADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAERIKKLK 298


>UniRef50_C2ED81 Flagellar motor switch protein FliY n=1 Tax=Lactobacillus ruminis
           ATCC 25644 RepID=C2ED81_9LACO
          Length = 409

 Score =  108 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 1/105 (0%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
              ++  FQ   G        ++DL+MDIP+ L+V LG ++ +++E+L    GSV+ L+ 
Sbjct: 306 VEVSQPSFQTLDGHAQVEG-DNLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEK 364

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L  EPLDIL+NG LIAQGEVVV+ D +GVRIT+I++ S+R+  + 
Sbjct: 365 LTDEPLDILLNGKLIAQGEVVVINDNFGVRITNILSQSQRINNMR 409


>UniRef50_Q3ADB7 Flagellar motor switch protein n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ
          Length = 347

 Score =  108 bits (269), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 75/123 (60%)

Query: 13  GAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTR 72
           G+ +   A    E    +  +  E   ++     V  T + ++LI+DIP+K+ V LGRTR
Sbjct: 225 GSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTR 284

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
             IKE+L    G+++ LD L  E +++L+NG L+A+GE+VVV + +G++I  I++P ER+
Sbjct: 285 RPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILSPKERL 344

Query: 133 RRL 135
            ++
Sbjct: 345 SKI 347


>UniRef50_A8RWA3 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=A8RWA3_9CLOT
          Length = 320

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 6/134 (4%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDI----DL 56
           M+DM  P  +  G    + A  +   +   + +  E  F +F    +    + I      
Sbjct: 189 MADM--PCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKK 246

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DI + ++V LG T  ++K++L L +G ++ LD  AG P D+++NG LI +G+V+V  D
Sbjct: 247 LLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGD 306

Query: 117 KYGVRITDIITPSE 130
           ++G RI +++   E
Sbjct: 307 RFGARIIEVVGKRE 320


>UniRef50_D2R538 Flagellar motor switch protein FliN n=2 Tax=Planctomycetaceae
           RepID=D2R538_9PLAN
          Length = 212

 Score =  106 bits (265), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 71/117 (60%)

Query: 14  AMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRM 73
           A  +    ++ +    +    A   F+       SG    ++L+ D+ + L +ELGRT M
Sbjct: 94  AQAEQAIASVDQPVDPAIAGIAPFAFRDLAAAPPSGEKATLELLRDVDLDLRIELGRTEM 153

Query: 74  TIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
            ++++L+L +GSVV LD LAG+P+DI +NG LIA+GEV+V+ D + VR+ ++++  +
Sbjct: 154 FLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVLNDNFCVRVAELLSGDD 210


>UniRef50_Q01PP4 Flagellar motor switch protein FliN n=1 Tax=Candidatus Solibacter
           usitatus Ellin6076 RepID=Q01PP4_SOLUE
          Length = 282

 Score =  106 bits (265), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 66/112 (58%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
              +   ++A E    +      +     ++L++D+ + +++  G+T + +K++L+LT G
Sbjct: 171 SPAAGQPEAAPEDAGGEPHTVKRNDMPPTMELLLDVELPVSISFGKTEILMKDVLKLTTG 230

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           S+V L+    EP+++L+N  LIA+GEVVVV   YGVRI  I+   +R+R + 
Sbjct: 231 SIVELNRGVNEPVEVLVNHCLIARGEVVVVEGNYGVRIQQIVNRQDRLRSIR 282


>UniRef50_B6BN04 Flagellar motor switch FliN n=1 Tax=Campylobacterales bacterium GD
           1 RepID=B6BN04_9PROT
          Length = 288

 Score =  106 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 62/90 (68%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
               + +I LIMD+ + + V +G+ +M +K++L +  GSV+ L+ LA +PLDIL++ ++I
Sbjct: 198 SGEEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVI 257

Query: 107 AQGEVVVVADKYGVRITDIITPSERMRRLS 136
           AQGEVV+V   +GV+IT I +  ER+ +L 
Sbjct: 258 AQGEVVIVDGNFGVQITSIGSKRERLTQLK 287


>UniRef50_D0YPX2 Flagellar motor switch protein FliN n=2 Tax=Mobiluncus mulieris
           RepID=D0YPX2_9ACTO
          Length = 254

 Score =  106 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 64/102 (62%)

Query: 33  SAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92
            +A T              + + L+ D+ + LT E+GRT++ + ++L L+ GSV+ LD  
Sbjct: 152 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 211

Query: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           AG   D+++NG LIA GE+VVV ++YG+RIT+I++ +E+  R
Sbjct: 212 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNR 253


>UniRef50_A6Q2L3 Flagellar motor switch protein FliN n=1 Tax=Nitratiruptor sp.
           SB155-2 RepID=A6Q2L3_NITSB
          Length = 133

 Score =  105 bits (263), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 78/136 (57%), Gaps = 4/136 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MS+  NP+ +   + +      LS  +  + + A E+ +      +         +++D+
Sbjct: 1   MSEETNPSPEEQNSEEQP---ELSPDELMAQQFAQES-YGSETEEEDRIEKSKFSILLDV 56

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+ + VE+G T+M ++E+L+L   SVV L+    EP+D+ +NG +IA+GE+  V + +G+
Sbjct: 57  PLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGL 116

Query: 121 RITDIITPSERMRRLS 136
           +IT ++TP ER++ L 
Sbjct: 117 KITHVVTPEERLKILE 132


>UniRef50_A0LT68 Flagellar motor switch protein FliN n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LT68_ACIC1
          Length = 123

 Score =  105 bits (263), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 66/117 (56%)

Query: 13  GAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTR 72
                     LS     SS+ A             +     ++L+ ++ + +T ELGRTR
Sbjct: 1   MTEISPSDSVLSALVGDSSEPAESVSPVNSAASAQTVRASRLELLQNVEMGVTAELGRTR 60

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           MT++ELL L  G VV L+  AG P+D+ +NG LIA+GEVVV+ +++GVRI++I+ P 
Sbjct: 61  MTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVIDEEFGVRISEIVGPD 117


>UniRef50_Q8D3E9 FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8D3E9_WIGBR
          Length = 135

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/138 (47%), Positives = 97/138 (70%), Gaps = 4/138 (2%)

Query: 1   MSDMN-NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           M+D+   P    N +++DL  +   ++   +S+   E    +     +S   +DI+LI+D
Sbjct: 1   MNDIKKEPEKIKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKNKKLS---EDINLILD 57

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           IP+K+T+ELGRT+MTI++LL L + S+V LDG  GEPLDILIN YL+A+GEVVV+ ++YG
Sbjct: 58  IPIKMTIELGRTKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKERYG 117

Query: 120 VRITDIITPSERMRRLSR 137
           ++I DIITP ER+RRL+R
Sbjct: 118 IKILDIITPEERIRRLNR 135


>UniRef50_C2KZ02 Possible flagellar motor switch protein FliY n=1 Tax=Oribacterium
           sinus F0268 RepID=C2KZ02_9FIRM
          Length = 472

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFG--GGDVSGTLQDIDLIM 58
           ++ M          + D+      E KS+          ++F   GG       + +++M
Sbjct: 336 LNQMQQSQTQMLELIRDIQGGKNKEAKSSEPSLIKPLNSREFENEGGGAGENPDNREMLM 395

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
            +P++++VE+GRTR  +K++L  TQGS+V LD +AGE  D+ +NG  IA+G++VVV + +
Sbjct: 396 KVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDIVVVEENF 455

Query: 119 GVRITDIITPSERMRRL 135
           G+RIT+I+        L
Sbjct: 456 GIRITEILKKDINQESL 472


>UniRef50_C3XES1 Flagellar motor switch protein FliY n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XES1_9HELI
          Length = 283

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 68/128 (53%)

Query: 9   DDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVEL 68
           D     +  L    L        K+ A T             +++I +++DI + + V +
Sbjct: 155 DSVKSELIMLTKNDLLTHVPKDLKAPASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRI 214

Query: 69  GRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           G+ RM +K+++ +  GSVV L+ LA +PL+IL+N  +I +GEVVVV   + ++IT+I T 
Sbjct: 215 GQKRMLLKDVISMDIGSVVELNQLASDPLEILVNDKIIGKGEVVVVDGNFAIQITEIGTK 274

Query: 129 SERMRRLS 136
            ER+  L 
Sbjct: 275 KERLESLR 282


>UniRef50_C0GJF1 Flagellar motor switch protein FliN n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJF1_9FIRM
          Length = 141

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 3/128 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
               +   +    E LS Q     +           G        +++ I+DIP++++V 
Sbjct: 16  TQVPSETEETPVVEDLSFQAKEMPQPKKNKPRAANAGMQSHP---NLERILDIPLRVSVS 72

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           LG+T   I +++ L  G++V  D   GEP+DI +NG LIA+GEVVVV + +GVRI+ IIT
Sbjct: 73  LGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVVGEHFGVRISQIIT 132

Query: 128 PSERMRRL 135
           P +R+  +
Sbjct: 133 PQQRIENM 140


>UniRef50_A1SEN5 Flagellar motor switch protein FliN n=1 Tax=Nocardioides sp. JS614
           RepID=A1SEN5_NOCSJ
          Length = 246

 Score =  104 bits (261), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 73/127 (57%)

Query: 3   DMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPV 62
           ++  P         D+ A  L  +   +  +              +G  + I+++  + +
Sbjct: 117 EIAEPFVIVPLEGSDVVAALLVPEALLAHPADDTPALPTTSAAAPTGDRRGIEMLHGVDM 176

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
           ++TVE+GR RMT++ELL L  G+V+ LD  AG P D+L+NG LIA+GEVVV+ + +G+RI
Sbjct: 177 EVTVEIGRARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDEDFGLRI 236

Query: 123 TDIITPS 129
           T+I+T S
Sbjct: 237 TEIVTDS 243


>UniRef50_B2V6S4 Flagellar motor switch protein FliN n=3 Tax=Sulfurihydrogenibium
           RepID=B2V6S4_SULSY
          Length = 194

 Score =  104 bits (261), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 83/146 (56%), Gaps = 11/146 (7%)

Query: 2   SDMNNPADDNNGAMDDL---WAEALSEQKSTSSKSAAETVFQQFGGGD--------VSGT 50
           S+M N +    G+ +DL   W+E L E+KS S  +       +                 
Sbjct: 44  SEMLNESGKKEGSQEDLAAQWSEMLHEEKSESVDANTHQTPLKESEKKESFTKEEFSPEI 103

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
           L  +D+++DIP+ +TVE+G   M+I+E+L+L   SV+ LD    EP+D+ +NG L+A+GE
Sbjct: 104 LNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGE 163

Query: 111 VVVVADKYGVRITDIITPSERMRRLS 136
           +  V D + ++IT+I+T  ER+R +S
Sbjct: 164 LYQVDDNFAIKITEILTKEERVRLVS 189


>UniRef50_A0LDK9 Flagellar motor switch protein FliN n=1 Tax=Magnetococcus sp. MC-1
           RepID=A0LDK9_MAGSM
          Length = 137

 Score =  104 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 69/119 (57%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           +  +      +   +   +     F         ++++L+MD+P++++V LG     IK+
Sbjct: 19  MGDDDGMSDLARELRDEMDHAENPFDVSTDGDLPKNLELLMDVPLEVSVRLGSVSYQIKD 78

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           LLRL +GS+V L+  A +PL+I +N  L+A GEVV++ DK G+RITDI++  ER+  L 
Sbjct: 79  LLRLNKGSLVELEKEADDPLEIYVNDRLLAYGEVVMIKDKLGIRITDIVSLKERLENLR 137


>UniRef50_Q30SP4 Flagellar motor switch FliN n=1 Tax=Sulfurimonas denitrificans DSM
           1251 RepID=Q30SP4_SULDN
          Length = 283

 Score =  104 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 70/122 (57%)

Query: 15  MDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMT 74
            ++L      + K+       E+          S  + +I LIMD+ + + V +G+ +M 
Sbjct: 161 DENLSNILFQKDKTLGDDRKNESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKML 220

Query: 75  IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           +K++L +  GSV+ L+ LA +PLDIL++  +IA+GEVV+V   +GV+IT I T  ER+ +
Sbjct: 221 LKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITSIGTKRERLNQ 280

Query: 135 LS 136
           L 
Sbjct: 281 LK 282


>UniRef50_Q04RL4 Endoflagellar motor switch protein n=6 Tax=Leptospira
           RepID=Q04RL4_LEPBJ
          Length = 174

 Score =  104 bits (259), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 63/101 (62%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
            S   +  +       S    +++L+MD+ + LTVELGRT M IK++  L +G VV LD 
Sbjct: 74  PSPTPSAPRSATRQSASTQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDK 133

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
             GE LDIL NG+L+ +G++V + D YG++IT+I+  S R+
Sbjct: 134 NVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL 174


>UniRef50_D1BCL8 Flagellar motor switch protein FliN n=1 Tax=Sanguibacter keddieii
           DSM 10542 RepID=D1BCL8_SANKS
          Length = 247

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 61/102 (59%)

Query: 29  TSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVA 88
                         G    +    ++ L+ D+ + L+ E+GR ++ ++++L L  G+V+ 
Sbjct: 143 ADQDVVPAAQAGAAGTSKGASVGDNLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIE 202

Query: 89  LDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           LD +AG P D+++NG LIA+GEVVV+ + YG+RIT+I+  +E
Sbjct: 203 LDRVAGSPADLMVNGRLIARGEVVVIDEDYGLRITEIVDLAE 244


>UniRef50_B8HEJ4 Flagellar motor switch protein FliN n=1 Tax=Arthrobacter
           chlorophenolicus A6 RepID=B8HEJ4_ARTCA
          Length = 238

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 59/91 (64%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
           G  + +     + LI ++ + LTVE+GRTRM++++ L L  G V+ LD  AG P D+L+N
Sbjct: 148 GAHNDASVPARLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLN 207

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMR 133
           G LIA GEVVVV   Y VRIT I+  +E +R
Sbjct: 208 GRLIAHGEVVVVDQDYAVRITRILDTAEGLR 238


>UniRef50_Q2RKD7 Flagellar motor switch FliN n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKD7_MOOTA
          Length = 124

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 64/117 (54%)

Query: 14  AMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRM 73
             +++     + +         +  F         G   D   I D+P++L  ELGRTRM
Sbjct: 4   TEEEIQKLLQAMEAGEDQPRVEKARFAPLQPAPAPGVTADFKRIADVPLRLKAELGRTRM 63

Query: 74  TIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           T+KE+L L  GSV+ LD LAGEP+D+L+N   +A+GEVVV+ D +GVRI  +    E
Sbjct: 64  TVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVINDAFGVRINSLAAVEE 120


>UniRef50_Q7ULU7 Flagellar motor switch protein fliN n=1 Tax=Rhodopirellula baltica
           RepID=Q7ULU7_RHOBA
          Length = 141

 Score =  103 bits (258), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 70/110 (63%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
           A A  +++ST                 +     D+DL+ ++ + L +ELGRT+M ++E+L
Sbjct: 31  AAATGDKESTERDVPRPFALGDLSPNSLGEAAHDVDLLGEVEMDLRIELGRTQMRLEEVL 90

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           RL  GSVVALD LAG+P+DI +NG LIA+GEV+V+ D + VR+T+++  S
Sbjct: 91  RLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMNDNFCVRVTELVGAS 140


>UniRef50_C2BUL2 Flagellar motor switch protein FliN n=1 Tax=Mobiluncus curtisii
           ATCC 43063 RepID=C2BUL2_9ACTO
          Length = 250

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 62/93 (66%)

Query: 42  FGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILI 101
                     + + L+ D+ + LT E+GRT++ + ++L L+ GSV+ LD  AG   D+++
Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214

Query: 102 NGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           NG LIA+GE+VVV ++YG+RIT+I++ +++  +
Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLADQQNQ 247


>UniRef50_UPI0001C312B0 flagellar motor switch protein FliN n=1 Tax=Conexibacter woesei DSM
           14684 RepID=UPI0001C312B0
          Length = 130

 Score =  103 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 61/99 (61%)

Query: 36  ETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGE 95
               +            D+  + D+PV+L VE+GRTRMT+ E L L  GS+V L+ +AGE
Sbjct: 8   PAFDRPTAANGSHTGQNDLGRLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGE 67

Query: 96  PLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRR 134
           P+D+L+NG  IA GEVVV+ +++G+RITD++      + 
Sbjct: 68  PVDLLVNGTPIAHGEVVVIDEEFGLRITDVLGAPAGEQN 106


>UniRef50_Q2RZE3 Possible flagellar motor switch FliN n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2RZE3_SALRD
          Length = 250

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSS-KSAAETVFQQFGGGDVSGTLQD--IDLIMDIPVKL 64
           AD ++GA       A S     S     +   F + G  ++SG        L+ D+ +++
Sbjct: 119 ADQSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFKLLADVDLEV 178

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            VELGR  + + ++L+LT GSVV L+ + GEPL +  NG LIA+GE VV+ +++GVRIT+
Sbjct: 179 RVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQFGVRITN 238

Query: 125 IITPSERMRRL 135
           + +   R +  
Sbjct: 239 LASEGHREKAF 249


>UniRef50_Q1Q6T3 Strong similar to flagellar motor switch protein FliN n=1
           Tax=Candidatus Kuenenia stuttgartiensis
           RepID=Q1Q6T3_9BACT
          Length = 120

 Score =  102 bits (254), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 75/113 (66%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
             Q +  S   ++ + ++         + ++DLI+D+ V ++VELGR  M IK++L L+Q
Sbjct: 8   DAQPTIESVEFSQLIPEEMDSQKGGEGMPNLDLILDVTVPVSVELGRANMLIKDILALSQ 67

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           GS+V L+ +AG P+++L+ G L+A+GEVVVV +++G++IT I  P +R+R L 
Sbjct: 68  GSIVELEKVAGTPVELLVRGKLLARGEVVVVEERFGLKITAICGPQDRVRNLG 120


>UniRef50_A8RWD0 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=A8RWD0_9CLOT
          Length = 368

 Score =  102 bits (254), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 60/92 (65%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
                       ++ LIMD+P+ ++VE+G+TR  +K++L  + G+VV LD  +  P+DI+
Sbjct: 273 PGSTLQNQSMNGNLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDII 332

Query: 101 INGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           +NG LIA+GEVVV+ D +GVRI++I+     +
Sbjct: 333 VNGQLIARGEVVVIDDNFGVRISEIVNTRSII 364


>UniRef50_D0MGA9 Flagellar motor switch protein FliN n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MGA9_RHOM4
          Length = 293

 Score =  102 bits (254), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGD--VSGTLQDIDLIMDIPVKL 64
           P                +     ++       F + G       G   +++L+ D+ +++
Sbjct: 161 PPSVTQQPTSRAPKATAAGAAEQAAVEVRPASFGELGPERIGDGGVKGNLELLADVELEI 220

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
            VELGR R+ + ++LRLT GS++ L+ L GEPL+I  NG LIA+GE VV+ +++GVRIT 
Sbjct: 221 VVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITS 280

Query: 125 IITPSERMRR 134
           ++T S +  +
Sbjct: 281 LVTGSRQREK 290


>UniRef50_D1B0L6 Flagellar motor switch protein FliN n=1 Tax=Sulfurospirillum
           deleyianum DSM 6946 RepID=D1B0L6_SULD5
          Length = 286

 Score =  101 bits (253), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 8/127 (6%)

Query: 10  DNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELG 69
             +    D   E++ E      K    ++            + +I+LI D+ + + V +G
Sbjct: 168 VEDMPRMDTPKESIPESALIEPKKVVPSM--------SPEEISNIELIKDVRLPIRVRIG 219

Query: 70  RTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
             +M +K++L +  GSV+ LD LA +PL+IL+   +IA GEVV+V   +GV+I +I T  
Sbjct: 220 SKKMLLKDVLSMDIGSVIELDQLANDPLEILVGDKVIAMGEVVIVDGNFGVQIGEIGTKR 279

Query: 130 ERMRRLS 136
           ER+ +L 
Sbjct: 280 ERLEKLR 286


>UniRef50_A4A5Y8 Flagellar motor switch protein fliN n=3 Tax=unclassified
           Gammaproteobacteria RepID=A4A5Y8_9GAMM
          Length = 117

 Score =  101 bits (253), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/116 (40%), Positives = 76/116 (65%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
                  + +++   E           +G   D+DL+MD+ V L+VE+GRT++ IK+LL 
Sbjct: 2   SDEQATDAVAAEPPEELQSTAPPAAASAGGKIDLDLLMDVQVTLSVEIGRTKLPIKDLLA 61

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L QGS+V+LD    EPLD+++NG LIA+GEVV  A ++G+R+ D+++PSER+++L 
Sbjct: 62  LNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAGQFGLRLIDVVSPSERLKKLK 117


>UniRef50_A9HHD1 Flagellar motor switch protein FliN n=2 Tax=Rhodospirillales
           RepID=A9HHD1_GLUDA
          Length = 125

 Score =  101 bits (252), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
            +D    ++D  + A S   +     +A    ++   GD SG    ++ + DIPVK+T  
Sbjct: 3   TNDPGIGLEDFSSAAPSPAGA-EPDGSATAAGRKQKNGDGSGQ---MEAVYDIPVKITAV 58

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-KYGVRITDII 126
           +G   M + +LL+L +G+VV LD   GE +DI  N  LIA+GEVVVV D   GV +T+II
Sbjct: 59  IGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDNHIGVTMTEII 118

Query: 127 TPS 129
           + +
Sbjct: 119 SSA 121


>UniRef50_C1F999 Putative flagellar motor switch protein FliN n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F999_ACIC5
          Length = 248

 Score =  101 bits (252), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 22  ALSEQKSTSSKSAAETVFQQFGGGDVSGTLQ---DIDLIMDIPVKLTVELGRTRMTIKEL 78
            LSE+ + + ++AA       G    + +     ++DL++DI V  ++  G   + I+EL
Sbjct: 128 ELSEKAAKAPETAARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIREL 187

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           L    G V+ LD    +P+D+++   ++A+GEVV+V   +G+R+T++  P + +  + 
Sbjct: 188 LETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVNGNFGLRVTEVAEPKKCLESVR 245


>UniRef50_C0GJF0 CheC, inhibitor of MCP methylation / FliN fusion protein n=1
           Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF0_9FIRM
          Length = 541

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQ--DIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           E       +  +   Q+          +   +DLI DIPV++T  LGR ++ +KEL+   
Sbjct: 432 EDVEPVMSTEPQDWLQESSPESTLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAK 491

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
            GSVV L   A  P+DIL NG L+A+GEVV   +++G++IT+I+   +R
Sbjct: 492 AGSVVELSCPADAPVDILANGKLVARGEVVHYNERFGIKITEIMQDWKR 540


>UniRef50_C1ZEF0 Flagellar motor switch protein FliN n=1 Tax=Planctomyces
           limnophilus DSM 3776 RepID=C1ZEF0_PLALI
          Length = 193

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 10/135 (7%)

Query: 5   NNPADDNNGAMDDLWAEALSEQ-------KSTSSKSAAETVFQQFGGG---DVSGTLQDI 54
           N  A+ +    +   A ALSE+            ++ A   F++FG       +  +  +
Sbjct: 58  NTSAEQSLRQAEQQLAAALSEELPPRNMRGLPPGEAPARFEFEEFGTPFPTRAAAPVFPL 117

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           D + D+ + + +ELGRT + I E+++L +G+VV LD LAG+P+DIL+NG L+A+GEV+V+
Sbjct: 118 DALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVL 177

Query: 115 ADKYGVRITDIITPS 129
            D + VRI +I+T  
Sbjct: 178 NDNFCVRIAEILTQD 192


>UniRef50_A6DBQ2 Flagellar motor switch protein n=1 Tax=Caminibacter mediatlanticus
           TB-2 RepID=A6DBQ2_9PROT
          Length = 269

 Score =  100 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 59/99 (59%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
             +            +D++MD+ ++L V +G+  M +K+++ +  GS+V LD LA EPLD
Sbjct: 170 ISESSHELNKEIPSQLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLD 229

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           ILI    I +GEVV+V   +G++IT I + ++R+  + +
Sbjct: 230 ILIEDKKIGEGEVVIVDGNFGIQITSIGSKADRLNSMKK 268


>UniRef50_C0QPC5 Flagellar motor switch protein FliN n=2 Tax=Aquificales
           RepID=C0QPC5_PERMH
          Length = 190

 Score =  100 bits (249), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 70/122 (57%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           D        EQ +   +   E    +          + +DL+MDIP++++VE+G T + +
Sbjct: 66  DQEALAKEWEQMAEKKEEKPEEKPVERFEKPAGLEQEKLDLLMDIPLEVSVEIGSTHLPL 125

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +E+L+L   ++V LD    +P+D+ +NG LIA+GE+  V D +G++IT IIT  ERM+ L
Sbjct: 126 EEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTVEDHFGIKITSIITVQERMKLL 185

Query: 136 SR 137
           + 
Sbjct: 186 TE 187


>UniRef50_Q17WT1 Flagellar motor switch protein n=8 Tax=Campylobacterales
           RepID=Q17WT1_HELAH
          Length = 283

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 70/116 (60%), Gaps = 2/116 (1%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
           E   E     +K   E   Q     ++   +++I +++D+ + + V +G+ +M +K+++ 
Sbjct: 169 ETKKEHNEEGTKVVREDKIQDASLENI--EIRNISMLLDVKLNVKVRIGQKKMILKDVVS 226

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +  GSVV LD L  +PL+IL++  +IA+GEVV+V   +G++ITDI T  ER+ +L 
Sbjct: 227 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDIGTKKERLEQLK 282


>UniRef50_B9L5V0 Flagellar protein FliY n=1 Tax=Nautilia profundicola AmH
           RepID=B9L5V0_NAUPA
          Length = 270

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 66/108 (61%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           +  + +E         ++ G ++++++++DI ++L V +G   M +K+++ +  GS+V L
Sbjct: 163 NPSTKSEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVEL 222

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           + LA EPLDILI    I +GEVV+V   +G++IT I +  ER+  L +
Sbjct: 223 NQLAKEPLDILIEDKKIGEGEVVIVDGNFGIQITSIGSREERLNSLKK 270


>UniRef50_Q0EZ61 Flagellar protein n=1 Tax=Mariprofundus ferrooxydans PV-1
           RepID=Q0EZ61_9PROT
          Length = 98

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
                         +++ IM +P++++VELGR ++ +  + RL +G V+ ++  A   + 
Sbjct: 1   MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           IL NG + A+GEVV   DK GVRIT+I+  S R+  LS
Sbjct: 61  ILANGSIFAKGEVVSTGDKLGVRITEIVPASARISSLS 98


>UniRef50_A8UW94 Flagellar motor switch FliN n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UW94_9AQUI
          Length = 164

 Score =   99 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 58/101 (57%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
              A                 + +D +MDIP+ + V +G T + I+EL+ L  GSV+ LD
Sbjct: 51  PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
               EP+DI +NG LIA+GE+VVV +K+GVRIT+I +   +
Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERK 151


>UniRef50_C1A552 Flagellar motor switch protein FliN n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A552_GEMAT
          Length = 141

 Score = 99.5 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 67/110 (60%)

Query: 17  DLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIK 76
                +L E+   ++  A       F    +  T   I +++D+ + +++ELGRT MT++
Sbjct: 20  GQPISSLKEETVAAAPQARAPQLTDFEQTMLGTTEVPIGMLLDLTLPVSIELGRTSMTVQ 79

Query: 77  ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           E+LRL +GSV+ LD LAGEP+DI +     A+GEVVV+ + +GVRIT ++
Sbjct: 80  EILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGEHFGVRITRVL 129


>UniRef50_B9KJD9 Flagellar switch protein n=5 Tax=Rhodobacter sphaeroides
           RepID=B9KJD9_RHOSK
          Length = 98

 Score = 99.5 bits (247), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 67/85 (78%)

Query: 51  LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110
            +++ L+ +I V+LTVE+GRT MTI++LLRL++GSVV LD LAG+PLD+L+NG  IA+GE
Sbjct: 14  AENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGE 73

Query: 111 VVVVADKYGVRITDIITPSERMRRL 135
           VV+V +++G+R   II P +R   L
Sbjct: 74  VVMVGERFGIRFGQIIEPEKRAESL 98


>UniRef50_B2USQ1 Flagellar motor switch protein FliY n=14 Tax=Helicobacter pylori
           RepID=B2USQ1_HELPS
          Length = 288

 Score = 99.2 bits (246), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 63/95 (66%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                +  +++I +++D+ + + V +G+ +M +K+++ +  GSVV LD L  +PL+IL++
Sbjct: 194 DASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVD 253

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
             +IA+GEVV+V   +G++ITDI T  ER+ +L  
Sbjct: 254 DKVIAKGEVVIVDGNFGIQITDIGTKKERLEQLKH 288


>UniRef50_Q44903 Flagellar motor switch protein fliN n=21 Tax=Spirochaetales
           RepID=FLIN_BORBU
          Length = 113

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 65/111 (58%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
            +           +     +              +  L+MD+ ++LTVELGRT   IK++
Sbjct: 1   MSVDEKSDNGEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQLTVELGRTERKIKDI 60

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           L +++G+++ LD LAGEP+DIL+NG ++A+GEVVV+ + +GVRIT+II   
Sbjct: 61  LGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDENFGVRITEIIKTK 111


>UniRef50_C0C1N9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C1N9_9CLOT
          Length = 460

 Score = 99.2 bits (246), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQ---QFGGGDVSGTLQDIDLI 57
           M+ M +              +    Q +   K     V Q   +    +      +++LI
Sbjct: 324 MTQMMDLMRQQLEMQQVQLQQMKQTQAAGPKKIKVNPVSQPNLEQSAEETELQESNLELI 383

Query: 58  MDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADK 117
           M +P++++VE+GRT+  +K++L L +GS+V LD LAGE +D+ +NG  IAQG+VVVV D 
Sbjct: 384 MGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDKLAGEQVDLFVNGQCIAQGDVVVVDDN 443

Query: 118 YGVRITDIITPS 129
           +G+RIT+I+   
Sbjct: 444 FGIRITEILADE 455


>UniRef50_Q1GNY9 Flagellar motor switch FliN n=2 Tax=Sphingomonadaceae
           RepID=Q1GNY9_SPHAL
          Length = 111

 Score = 98.8 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           +  + A    +            + DL+  + ++++VE+G T MT+ ELL L +GSV+ L
Sbjct: 2   TDVADAPKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIEL 61

Query: 90  DGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           D  A + LDI  NG LIA+GE+V V  +YG+++ +++ P+  +    R
Sbjct: 62  DRAATDLLDIYANGTLIAKGEIVSVDGRYGIQVAEVVAPARGLEGFER 109


>UniRef50_Q4JMS2 Predicted flagellar motor switch protein n=3 Tax=Bacteria
           RepID=Q4JMS2_9BACT
          Length = 110

 Score = 98.4 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/113 (41%), Positives = 78/113 (69%), Gaps = 3/113 (2%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           +SE+   +  +A ET+  +        + +++ L+ +I V LTVE+G+  + I++LLRL 
Sbjct: 1   MSEETELAEDAATETMDAE---TAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLN 57

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           +GSV+ LD LAG+PLDIL NG +IA+GEVV+V +++G+R T+I+ P+ RM  +
Sbjct: 58  EGSVIELDRLAGDPLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARMESV 110


>UniRef50_A1UTV7 Flagellar motor switch protein fliY n=35 Tax=Rhizobiales
           RepID=A1UTV7_BARBK
          Length = 139

 Score = 98.4 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
                 + +    + +L+M IPV++ + LG T M +  L+ L +GSV+ L+   G+P+DI
Sbjct: 48  SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107

Query: 100 LINGYLIAQGEVVVVAD---KYGVRITDIITP 128
           ++NG +IA+GEV+V+ D   ++GV +T++I  
Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139


>UniRef50_A1QZ73 Flagellar motor switch protein FliN n=7 Tax=Spirochaetaceae
           RepID=A1QZ73_BORT9
          Length = 114

 Score = 98.4 bits (244), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 68/109 (62%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           +  +  S+      +     +              +  L+MD+ +++TVELGRT   IK+
Sbjct: 1   MAIDDKSDIGEEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQVTVELGRTERKIKD 60

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
           +L +++G+++ LD LAGEP+DIL+NG +IA+GEVVV+ + +GVRIT+II
Sbjct: 61  ILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITEII 109


>UniRef50_C6WJP8 Flagellar motor switch protein FliN n=1 Tax=Actinosynnema mirum DSM
           43827 RepID=C6WJP8_ACTMD
          Length = 250

 Score = 98.4 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 61/77 (79%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++L+  + +++T ELGRTR+T++ELL L+ G+V+ LD  AG P D+L+NG LIA+GEVVV
Sbjct: 168 LELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVV 227

Query: 114 VADKYGVRITDIITPSE 130
           + + +G+R+T+II P +
Sbjct: 228 IDENFGIRVTEIIKPGD 244


>UniRef50_B1LV08 Flagellar motor switch protein FliN n=1 Tax=Methylobacterium
           radiotolerans JCM 2831 RepID=B1LV08_METRJ
          Length = 110

 Score = 98.0 bits (243), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 53/87 (60%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                  T  D++ + D+PV ++  LG  RM I +LLRL  G+V+ LD   GE +D+ +N
Sbjct: 24  DAPTTPKTAADLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVN 83

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPS 129
             L+A+GEVV+V D+ GV +T+I+   
Sbjct: 84  NRLVARGEVVLVEDRLGVTMTEIVKGE 110


>UniRef50_D2S982 Flagellar motor switch protein FliN n=1 Tax=Geodermatophilus
           obscurus DSM 43160 RepID=D2S982_9ACTO
          Length = 249

 Score = 97.6 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 8   ADDNNGAMDDLWAEALSEQKS--TSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLT 65
            +D + AMD L  + +           +    +  Q            +DL+  + +++T
Sbjct: 116 TEDPDTAMDGLRDKGMFVAVPLLAGGGTVEAVLALQVTLPQARTQRGSLDLLRHVAMEVT 175

Query: 66  VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           VE+GRTRMT+ ELL L  G VV LD  A  P D+L+NG LIA+GEVVVV + +G+RI++I
Sbjct: 176 VEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVVDEDFGLRISEI 235

Query: 126 ITPS 129
           +T +
Sbjct: 236 VTDA 239


>UniRef50_C6NYG7 Flagellar motor switch protein FliN n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NYG7_9GAMM
          Length = 120

 Score = 97.6 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 24  SEQKSTSSKSAAETVFQQFGGGDV-SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           S   +T+                + +     +DL++++P++++VELGRTRM  K +L+L+
Sbjct: 4   STDDATNPLPIEHFDSSDETNEKLLTPGSPSVDLLVNVPMRISVELGRTRMPFKNILQLS 63

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVA-DKYGVRITDIITPSERMRRLSR 137
           QGSV+ L+   GEPL I ING + A GE V+V  +++GVR+T ++   + ++    
Sbjct: 64  QGSVIELNRAVGEPLTIYINGEIFAYGEAVLVNQERFGVRLTALVNKEDLIQNPRE 119


>UniRef50_Q03593 Flagellar motor switch protein fliN n=21 Tax=Alphaproteobacteria
           RepID=FLIN_CAUCR
          Length = 110

 Score = 97.2 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 62/108 (57%)

Query: 23  LSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLT 82
           ++E   T  +     +  +        T  D+  + D+PV ++  LGR  M++ +LL+L 
Sbjct: 1   MAEDNLTLDEFGGAMLASEAPIELSDKTAADLAPVFDVPVNISAVLGRANMSVAQLLQLG 60

Query: 83  QGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           QGS++ LD   GE +DI +N  L+A+GEVVVV ++ GV +T+II   +
Sbjct: 61  QGSILELDRKVGEAIDIYVNNRLVARGEVVVVDERLGVTMTEIIKDGD 108


>UniRef50_Q89AZ3 Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola
           (Baizongia pistaciae) RepID=FLIN_BUCBP
          Length = 134

 Score = 97.2 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 16  DDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTI 75
           +D+      E K   SK+  +         D+S     +  IMD+PV LT+E+G  ++TI
Sbjct: 19  EDIKKSCEIEDKIFHSKTVNDVDLNLNSKNDIS---SKMKFIMDVPVHLTIEVGTVKITI 75

Query: 76  KELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           K+LL L   S++ LD  AG+PL+IL+NGY+IA GE+VV  +KYG+RI +II  S
Sbjct: 76  KDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTENKYGIRIINIIDNS 129


>UniRef50_C7M222 Flagellar motor switch protein FliN n=1 Tax=Acidimicrobium
           ferrooxidans DSM 10331 RepID=C7M222_ACIFD
          Length = 95

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 62/86 (72%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
            +V  T  ++ ++ ++ ++L+VELGR RM ++ LL LT G V+ LD  A  P+D+L+NG 
Sbjct: 2   PEVPETAANLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGT 61

Query: 105 LIAQGEVVVVADKYGVRITDIITPSE 130
           L+A+GEVVVV D++GVRI +II+  E
Sbjct: 62  LVAKGEVVVVDDEFGVRILEIISSDE 87


>UniRef50_A5V6A7 Flagellar motor switch protein FliN n=4 Tax=Sphingomonadaceae
           RepID=A5V6A7_SPHWW
          Length = 107

 Score = 96.8 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/101 (39%), Positives = 61/101 (60%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           +      G        ++ L+ DIP++L+VE+G T + + EL+ L  GSVV LD  A E 
Sbjct: 5   SDVPAVPGAAELAGRDNLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANEL 64

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
           LDI++NG L+A+GEVV V  K+G+R+ DI+    R+  + R
Sbjct: 65  LDIMVNGTLVAKGEVVTVNGKFGIRVVDIVAADARLPGIER 105


>UniRef50_B1I5E1 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I5E1_DESAP
          Length = 127

 Score = 96.5 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 65/118 (55%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRT 71
           N      +   L  +   + K      F+Q G   + G    ++ + D+ V ++ ELG+T
Sbjct: 2   NEEEIRQFLSGLDREPGPTVKKVQFPRFEQAGTPGMPGVRISLEYLDDVEVDVSAELGQT 61

Query: 72  RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
            MT++E L L +GSV+ LD  AGE +D+++NG  +A+GEV+V+ D + +RI  I  P 
Sbjct: 62  AMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVINDLFVLRIHSIAHPQ 119


>UniRef50_D0I457 Flagellar motor switch protein FliN n=2 Tax=Vibrionaceae
           RepID=D0I457_VIBHO
          Length = 116

 Score = 96.1 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 59/96 (61%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
                    +  D+  I +IPV LT+E+  T + + +L+ +  GSV+ LD L+GEP+D+ 
Sbjct: 20  PSSDAPAPVSSNDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVR 79

Query: 101 INGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           +NG L+   EVVVV +KYG+R+ +++   + +R L+
Sbjct: 80  VNGTLLGHAEVVVVNNKYGLRLVNVVDEKDMLRGLA 115


>UniRef50_C0AR55 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198
           RepID=C0AR55_9ENTR
          Length = 313

 Score = 95.7 bits (237), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           +++M  P +++   +  L  E L +    +                V     ++  I  I
Sbjct: 196 LNEMFYPDENDLDDLIQLQQENLDDHNDVT------------SPTLVHDNSVNLQSINSI 243

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PV ++  L    + I+++  L  G  + L   A + + I +NG  +A GE+V + D + V
Sbjct: 244 PVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKIGDNFAV 303

Query: 121 RITDIITPSE 130
            I    +  E
Sbjct: 304 EIQRSFSAQE 313


>UniRef50_Q07SI0 Flagellar motor switch protein FliN n=7 Tax=Alphaproteobacteria
           RepID=Q07SI0_RHOP5
          Length = 132

 Score = 95.7 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 74/129 (57%), Gaps = 14/129 (10%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           +D++N A ++        A +  +    ++++A ET             L +++ I+ IP
Sbjct: 7   TDLSNAAAEHASEPFKPEAASFGKLADLAARAAEET-----------SRLTNLEPILRIP 55

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KY 118
           V + V LG   M + +L++L +G+V+ LD   GEP+++++NG ++A+G VVVV D   ++
Sbjct: 56  VTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDENSRF 115

Query: 119 GVRITDIIT 127
           GV +T+I+ 
Sbjct: 116 GVSLTEIVG 124


>UniRef50_Q2WA21 Flagellar motor switch/type III secretory pathway protein n=6
           Tax=Rhodospirillales RepID=Q2WA21_MAGSA
          Length = 108

 Score = 95.3 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 60/105 (57%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
                +          +    D+  + +D++ + DIPV+++  LG+  M + +LL+L +G
Sbjct: 2   PDFELNDFKPEVEEQGRGDVPDMPRSARDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRG 61

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           +VV LD   GE +DI +N  L+A+GEVVVV D+ GV +T+II   
Sbjct: 62  AVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTD 106


>UniRef50_B6R821 Flagellar motor switch protein FliN n=2 Tax=Rhodobacteraceae
           RepID=B6R821_9RHOB
          Length = 138

 Score = 94.9 bits (235), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 8/134 (5%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSS-----KSAAETVFQQFGGGDVSGTLQDIDLIM 58
           M++  + ++ A+   W  A SE +          SA         G       +++D ++
Sbjct: 1   MSSSNEMSDEALALQWEAAASEAEMDMDMAAPAASAQPAASAPEKGVSDENVDRNLDAVL 60

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-- 116
            IPV + V LG   M +  LL+L +G+V+ LD   GEP+DI++NG  +A+GE+VVV D  
Sbjct: 61  GIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEIVVVEDDN 120

Query: 117 -KYGVRITDIITPS 129
            ++GV +T+I+   
Sbjct: 121 SRFGVSLTEIVGAK 134


>UniRef50_A4SI07 Lateral flagellar motor switch protein, lfiN n=2 Tax=Aeromonas
           RepID=A4SI07_AERS4
          Length = 125

 Score = 94.9 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 11/127 (8%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           M++       +   +D L+ + +S   +    +   +  Q           +D+     I
Sbjct: 1   MNEHTMNDPLDLDGLDQLFGDDISMPSAADYMAPTSSSKQ-----------RDLSFFRQI 49

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PVK+T+E+  T +++ EL+R+ +G+V+ LD LAGE LD+ +NG L+A+GEVVVV  KYG+
Sbjct: 50  PVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGKYGL 109

Query: 121 RITDIIT 127
           R+ D+I 
Sbjct: 110 RLVDVID 116


>UniRef50_Q1D9K8 Type III secretion system apparatus protein YscQ/HrcQ n=2
           Tax=Cystobacterineae RepID=Q1D9K8_MYXXD
          Length = 467

 Score = 94.5 bits (234), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 67/127 (52%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           ++D       + G+ D+  AE   E++  ++         +    D        DL+ D+
Sbjct: 341 ITDFVQGEPGHPGSADEASAEPGDEEEDFTNPELDVPPELEGAALDDVSKPDGSDLLGDV 400

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           P+++ VEL R  +T ++++ L  G V+ L+   GEP+++ +NG ++A+GE+V +  + GV
Sbjct: 401 PLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVELEGQLGV 460

Query: 121 RITDIIT 127
           RI  + +
Sbjct: 461 RIITLAS 467


>UniRef50_C8W1G7 Surface presentation of antigens (SPOA) protein n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W1G7_DESAS
          Length = 128

 Score = 94.5 bits (234), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 54/102 (52%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
             +   +  +  F     G        I  I D+PV +T ELG   +T++E+L L+ G +
Sbjct: 14  NKSEKTAVQKLRFTPLTPGGEQRIKTSIKHIEDVPVIVTAELGGAALTVREVLNLSPGML 73

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           + LD LAGE + + IN     +GEV+V+ D YG+RIT +  P
Sbjct: 74  IKLDVLAGELVTMSINNQKFGRGEVMVINDNYGIRITSVFKP 115


>UniRef50_B9JRN7 Flagellar motor switch protein FliN n=2 Tax=Rhizobiales
           RepID=B9JRN7_AGRVS
          Length = 220

 Score = 94.5 bits (234), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 3/93 (3%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
                   S    ++DLIMDIP+ + + LG +RM +  L+ L +G+++ALD   GEP++I
Sbjct: 126 APAHQAPGSALDSNLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEI 185

Query: 100 LINGYLIAQGEVVVVAD---KYGVRITDIITPS 129
           ++NG  IA+GE+ V+ +   ++GV++ ++++  
Sbjct: 186 MVNGRRIARGEITVLENDDTRFGVKLIEVMSTK 218


>UniRef50_D1AZW0 Surface presentation of antigens (SPOA) protein n=3
           Tax=Campylobacteraceae RepID=D1AZW0_SULD5
          Length = 103

 Score = 94.2 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 49/83 (59%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           + ++DI V    ELG T +TI+ LL+L +GSV+ L+  AGE +++ IN  +  +GEV+V 
Sbjct: 18  ENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVY 77

Query: 115 ADKYGVRITDIITPSERMRRLSR 137
                +RI +I+     ++   +
Sbjct: 78  EKNLAIRINEILDSKTVIQYFKK 100


>UniRef50_A1T0L0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Psychromonas ingrahamii 37 RepID=A1T0L0_PSYIN
          Length = 120

 Score = 93.8 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 50/93 (53%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
                      +   + +  + DIPV +TVE+G   +T+KELL +   SV+ L    G+ 
Sbjct: 26  NDISDAPPSSSAKKAKSLSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKA 85

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           LDI +NG L A GEVVV    YGV+ITDI+   
Sbjct: 86  LDIKVNGKLFAYGEVVVANGHYGVKITDIVNKD 118


>UniRef50_A8EW52 Flagellar motor switch protein FliY n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW52_ARCB4
          Length = 289

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 62/112 (55%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
            +   +  +             V+ T ++++L+ ++ +KL+V LG   + +K++LR   G
Sbjct: 177 PKVQVTPSTPVSNNTGSSNNSSVTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVG 236

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
            ++ L+ +  EPL+ILING  I +GE V+V  K+G++I  II    ++ ++ 
Sbjct: 237 EIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINEDFQIDKIG 288


>UniRef50_A6CER1 Flagellar motor switch protein fliN n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6CER1_9PLAN
          Length = 226

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 38  VFQQFGGG-DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
            F  F            +  + ++ + L +ELGRT + I+E+L++ +G VV LD LAG+P
Sbjct: 133 EFPNFESMVSNPEEAMKLSSLQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDP 192

Query: 97  LDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           +DIL+NG +IA+GEV+V+ D + VR+ +II+P 
Sbjct: 193 VDILVNGRIIARGEVLVLNDNFCVRVAEIISPE 225


>UniRef50_B1ZL53 Flagellar motor switch protein FliN n=6 Tax=Rhizobiales
           RepID=B1ZL53_METPB
          Length = 108

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 3/101 (2%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
            S+        G     G  +++D I+ IPV + V LG   M + +L++L +G+VV LD 
Sbjct: 2   SSSPFPETDLAGNEPRVGDGRNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDH 61

Query: 92  LAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITPS 129
             GEP+D+++NG +IA+GE+V+V +   ++GV +T+++ PS
Sbjct: 62  RVGEPVDVMVNGRVIARGEIVIVEEDNSRFGVSLTEVVGPS 102


>UniRef50_A7H064 Flagellar motor switch protein FliN n=8 Tax=Epsilonproteobacteria
           RepID=A7H064_CAMC5
          Length = 105

 Score = 93.4 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query: 52  QDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEV 111
           +  D +MDI V    ELG T ++I ELL+   GSV+ L+  AGE +++ IN  +  +GEV
Sbjct: 17  KSYDELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEV 76

Query: 112 VVVADKYGVRITDIITPSERMRRLSR 137
           +V      +RI +I+     ++   +
Sbjct: 77  MVYEKNLAIRINEILDSKSVIQYFKK 102


>UniRef50_A4THZ3 Flagellar switch protein n=26 Tax=Enterobacteriaceae
           RepID=A4THZ3_YERPP
          Length = 137

 Score = 93.0 bits (230), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 2/127 (1%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVF--QQFGGGDVSGTLQDIDLIM 58
           M+D     +++      L   A+S  +   S   +  +    +          + + L  
Sbjct: 1   MTDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFS 60

Query: 59  DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKY 118
            IPV LT+E+    + + ELL +   SV+ LD LAGEPLDI +NG +  Q EVVV+ +KY
Sbjct: 61  RIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKY 120

Query: 119 GVRITDI 125
           G+RI +I
Sbjct: 121 GLRIINI 127


>UniRef50_Q57259 Flagellar motor switch protein fliN n=2 Tax=Rhizobium/Agrobacterium
           group RepID=FLIN_AGRT5
          Length = 179

 Score = 93.0 bits (230), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 3/126 (2%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
           + D     +DL A             AA            SG  +++++IMDIP+ + + 
Sbjct: 53  STDEVSTDNDLSAFGGGAADFAMDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIV 112

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITD 124
           LG +RM +  L+ L +G+ +ALD   GEP++I++NG  IA+GE+ V+ D   ++GV++ +
Sbjct: 113 LGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIE 172

Query: 125 IITPSE 130
           +++  +
Sbjct: 173 VLSTRK 178


>UniRef50_A7K019 Type III secretion inner membrane protein YscQ n=13
           Tax=Vibrionaceae RepID=A7K019_VIBSE
          Length = 322

 Score = 92.6 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 47/89 (52%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
            ++    +   T + +     +PV+LT ++G   +T+++L +L  G V  L+    +P+ 
Sbjct: 228 IEKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVT 287

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIIT 127
           +  NG +I + E+V V +  GVR+ ++  
Sbjct: 288 LRANGKIIGECELVNVNEHLGVRVLELFG 316


>UniRef50_B6QZA8 Flagellar motor switch protein n=1 Tax=Pseudovibrio sp. JE062
           RepID=B6QZA8_9RHOB
          Length = 111

 Score = 92.6 bits (229), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 55/90 (61%)

Query: 41  QFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDIL 100
              GG      +D++ + D+PV+L   LG T+M + +LL L  G V+ LD   GE +D+ 
Sbjct: 22  DEDGGGGVKAAEDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVY 81

Query: 101 INGYLIAQGEVVVVADKYGVRITDIITPSE 130
           +N  LIA+GEVV+V DK GV +T+II   +
Sbjct: 82  VNNRLIARGEVVLVEDKLGVTMTEIIKADK 111


>UniRef50_B8EL08 Flagellar motor switch protein FliN n=2 Tax=Beijerinckiaceae
           RepID=B8EL08_METSB
          Length = 110

 Score = 92.2 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
           S +     ETV         +   ++++ I+ IPV + V LG   M +  LL+L +G+V+
Sbjct: 2   SDAQIEVNETVGGGEEPPGRANVSRNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVI 61

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDIITP 128
            LD   GEP+D+++NG +IA+GE+VVV D   ++GV +T+I+ P
Sbjct: 62  PLDHRVGEPVDVVVNGRIIARGEIVVVEDDNSRFGVSLTEIVGP 105


>UniRef50_A5FYJ9 Flagellar motor switch protein FliN n=17 Tax=Alphaproteobacteria
           RepID=A5FYJ9_ACICJ
          Length = 132

 Score = 92.2 bits (228), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 11/129 (8%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           S++  P  + NG    L    L+     ++    ET              +D++ + D+P
Sbjct: 11  SEITTPTGEPNGNGQVLSDLPLAPVSRRTAGDGPETQRPS----------RDLEAVYDVP 60

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-KYGV 120
           V ++  LGR+ M + +LL+L +G+VV LD  AG+P+DI +N  LIA+GEVV++ + K G+
Sbjct: 61  VLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIARGEVVMLDETKLGI 120

Query: 121 RITDIITPS 129
            +T+I+   
Sbjct: 121 TMTEIVKSD 129


>UniRef50_C1ZEH8 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEH8_PLALI
          Length = 396

 Score = 91.8 bits (227), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           + D        +  +DDL +           +SAA    Q+        +   +  +  +
Sbjct: 260 LPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLA-QETMPQQSVTSQLMLQRLSGV 318

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
            V+L+V L   RM +  LL+L+ G++V       + LDI I     AQGE V + + +GV
Sbjct: 319 RVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGEHFGV 378

Query: 121 RITDIITPSERMRRL 135
           ++  +  P E+   L
Sbjct: 379 KVNRLGPPPEKPSSL 393


>UniRef50_A6F9R7 Flagellar motor switch protein n=1 Tax=Moritella sp. PE36
           RepID=A6F9R7_9GAMM
          Length = 122

 Score = 91.8 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
                 +     +D+    +IP+ +T+E+  T++ I +L+ L+ G+V+ LD LA EPLD+
Sbjct: 27  SSLMTAENKPLKKDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDL 86

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIIT 127
            +NG L+A  EVVVV  KYGV++ D++ 
Sbjct: 87  KVNGQLLATAEVVVVNGKYGVKLIDVVD 114


>UniRef50_A5D0I4 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Pelotomaculum thermopropionicum SI
           RepID=A5D0I4_PELTS
          Length = 126

 Score = 91.8 bits (227), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 5/111 (4%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQ-DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
            S+S     +  F           ++  +  + D+ ++++VELG+T M ++E+L L QGS
Sbjct: 14  ASSSDADIKKVQFPPLTPVKGMDRVKTSMSHLEDVQIEISVELGQTVMKVREVLGLEQGS 73

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
           V+ LD   GE +++++N    A+GEVVV+ D +GVRIT I     R++ L 
Sbjct: 74  VIRLDKAIGEAVEVVLNEQRFARGEVVVINDSFGVRITSI----NRVQNLK 120


>UniRef50_A6CBY5 Probable flagellar motor switch protein fliN n=1 Tax=Planctomyces
           maris DSM 8797 RepID=A6CBY5_9PLAN
          Length = 295

 Score = 91.5 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 49/116 (42%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
                     S  S  +   Q       +     ++ I  +PV+  V+L   ++ + +LL
Sbjct: 177 EPEADPAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKLASKKIEMNQLL 236

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
            +  GS++  D    +PL++ IN  +   GE V + + +G++I  +    E   ++
Sbjct: 237 SICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGEHFGLKIDRVGFKEEYESKI 292


>UniRef50_C0GJH0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJH0_9FIRM
          Length = 150

 Score = 91.5 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
            D+ +              E      +  ++      F +F         + ++    +P
Sbjct: 20  PDLADEVKQEKEGSQPKQEEP----PAAPAEEVERVEFPEFVQAPQGAKERGVNFFESVP 75

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVR 121
           V L +ELG   +T++E+L L + S++ LD LAGE   + +NG  +A GEVVV+ D +G R
Sbjct: 76  VTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDNFGFR 135

Query: 122 ITDIITPS 129
           + ++   S
Sbjct: 136 VAEVGGSS 143


>UniRef50_B6IQ95 Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum
           SW RepID=B6IQ95_RHOCS
          Length = 119

 Score = 91.5 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 44  GGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILING 103
             +      ++  I ++PV + V LGRT M + +LL+L +G+VV L+   GE +D+ +N 
Sbjct: 29  PEEPGQDRDELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVND 88

Query: 104 YLIAQGEVVVVAD-KYGVRITDIITPS 129
            LIA+GEVV+V D + GV +T+I+   
Sbjct: 89  RLIARGEVVIVDDGRLGVTMTEIVKAE 115


>UniRef50_Q3ADD4 Flagellar motor switch protein FliN n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ADD4_CARHZ
          Length = 124

 Score = 91.5 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
             F              + L+ +I +++   +G T +T+++LL L +G V+ LD   G+ 
Sbjct: 23  PEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDL 82

Query: 97  LDILINGYLIAQGEVVVVADKYGVRIT 123
           +D+ I+G   A GEVVV+ + YGVRIT
Sbjct: 83  IDLFIDGRRFAVGEVVVINEMYGVRIT 109


>UniRef50_B6IW97 Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum
           SW RepID=B6IW97_RHOCS
          Length = 105

 Score = 91.1 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 56/89 (62%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                SG   + + I+ +PV+++V LGR RM I +LLRL    VV L+ + GEP+D+ +N
Sbjct: 6   SDAAESGETPERNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVN 65

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSER 131
             L+A+GE+VVV  + G+ I +++  + R
Sbjct: 66  DRLVARGELVVVDGRLGLTIVELMPQASR 94


>UniRef50_D1R7U0 Putative type III secretion system protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R7U0_9CHLA
          Length = 462

 Score = 91.1 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 51/80 (63%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
             +   Q    I DIP+ +T E+GR +MT+K+L+ L  G+++ L+    + +D+++NG  
Sbjct: 382 ASTANKQTAPSIDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKR 441

Query: 106 IAQGEVVVVADKYGVRITDI 125
           +A+GE++ + D  GVR+ +I
Sbjct: 442 VARGELLSIGDALGVRVLEI 461



 Score = 39.1 bits (90), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP------LDILINGYLIAQGEV 111
           + V + +E G+T +   E  +L  G ++ LD  + +P      + + ING    +G++
Sbjct: 208 LEVVVHLEAGKTTLKAGEWKKLALGDLLILDSCSLKPGEDAGRVLLTINGKPFFRGKL 265


>UniRef50_A5KY22 Flagellar motor switch protein n=2 Tax=Vibrionales
           RepID=A5KY22_9GAMM
          Length = 127

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 49/87 (56%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
           G     + +I L+  IPV +TVE+ R  + + ELL L  GSVV L+   G+P+DI ING 
Sbjct: 41  GADKEHVSNISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGT 100

Query: 105 LIAQGEVVVVADKYGVRITDIITPSER 131
               GE+V    +YGVR+  II    +
Sbjct: 101 AFGTGEIVSKNGQYGVRLLSIIKKPSK 127


>UniRef50_Q0G104 Flagellar motor switch FliN protein:Surface presentation of
           antigens (SPOA) protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0G104_9RHIZ
          Length = 131

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 12/132 (9%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           M +P D +   ++      + E+         +                D+DL++D+ V 
Sbjct: 1   MIDPNDPHGSEIEHSGQPYMDEEGGEEDDRRPDFR---------GADKMDLDLVLDVSVT 51

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV---ADKYGV 120
           + V LG  RM++ ELL+L +GS+V LD   G+P+D+++NG +IA+GE+VV+     ++GV
Sbjct: 52  MQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVLDQDDQQFGV 111

Query: 121 RITDIITPSERM 132
            +T++ TP  ++
Sbjct: 112 TLTEVATPGSKL 123


>UniRef50_C6XFK8 Putative flagellar motor switch protein n=1 Tax=Candidatus
           Liberibacter asiaticus str. psy62 RepID=C6XFK8_LIBAP
          Length = 147

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           ++NP  D N +     +E L ++    + S             +  +  + DLIM+IPVK
Sbjct: 22  IDNPLQDTNVSSPTNNSEMLIQKNDVDNIS---EPISSDSNNILEKSTDNFDLIMNIPVK 78

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGV 120
           + + LG   M I  L+ L++G V+ LD   GE +DI IN   IA+GE+ ++ +    +GV
Sbjct: 79  MQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV 138

Query: 121 RITDIITPS 129
           R+ +I+   
Sbjct: 139 RVIEILNAQ 147


>UniRef50_P42713 Yop proteins translocation protein Q n=21 Tax=Yersinia
           RepID=YSCQ_YERPE
          Length = 307

 Score = 90.7 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
           + +  F            + +  +  +PV+++ E+GR  +    L  L  GS++ L    
Sbjct: 210 SNKLEFIGMSHESDELNPEPLTDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 269

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
              + +L NG L+  G +V +  + GVRI  +  
Sbjct: 270 DGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTE 303


>UniRef50_Q11LL6 Flagellar motor switch protein FliN n=3 Tax=Phyllobacteriaceae
           RepID=Q11LL6_MESSB
          Length = 121

 Score = 90.3 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
            +     +  T  K+  E           +   +    ++DIPV+L + LG   MT+ EL
Sbjct: 5   PSAVHKSEGGTLDKAIEEMRSALHEEAQPNMDAEKTGFLVDIPVELQIVLGSAEMTVSEL 64

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRITDI 125
           + L +GS V+LD   GEP++I++NG LIA+GE+ ++ +   ++GVR+T+I
Sbjct: 65  MALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114


>UniRef50_Q18D12 Putative flagellar motor switch protein n=3 Tax=Clostridium
           difficile RepID=Q18D12_CLOD6
          Length = 124

 Score = 90.3 bits (223), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 63/96 (65%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
            +           +I  I+D+ ++L+V +GRT+MT++++L L +GS++ LD LA + ++I
Sbjct: 28  DELALDVSEVNRNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEI 87

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
           LI+  ++A G+VVVV   +GV+IT I++  + ++ L
Sbjct: 88  LIDNKVLAYGKVVVVDLNFGVKITSIVSEEDMVKSL 123


>UniRef50_A5P6I8 Flagellar motor switch protein n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P6I8_9SPHN
          Length = 96

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
           LI DI V+LTVELGR  M ++++L L + SV+ LD L  EPLD+ +NG LIA+GEV+   
Sbjct: 10  LIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQG 69

Query: 116 DKYGVRITDIITPS 129
           +++ +R+ +I+  S
Sbjct: 70  NRFAIRVLEIVGAS 83


>UniRef50_A1RF65 Flagellar motor switch protein FliN n=8 Tax=Shewanella
           RepID=A1RF65_SHESW
          Length = 128

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 55/83 (66%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                S  L++ +    +PV++T+EL    M++ EL R+ +G V+ALD + GEPLDI +N
Sbjct: 35  KQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVN 94

Query: 103 GYLIAQGEVVVVADKYGVRITDI 125
           G L+ +GEVV VA +YGVR+ +I
Sbjct: 95  GALLGRGEVVEVAGRYGVRLLEI 117


>UniRef50_Q058C3 Flagellar motor switch protein, C-ring protein n=1 Tax=Buchnera
           aphidicola str. Cc (Cinara cedri) RepID=Q058C3_BUCCC
          Length = 134

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 53/75 (70%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D   +  IPV LT+EL + ++TI+ELL+  +GS++ L+    +PL+I IN YLIA GE+V
Sbjct: 56  DSSALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELV 115

Query: 113 VVADKYGVRITDIIT 127
           V  D YGV+IT ++T
Sbjct: 116 VNNDCYGVQITKLLT 130


>UniRef50_C9PEF6 Flagellar motor switch protein FliN n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PEF6_VIBFU
          Length = 128

 Score = 89.9 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 56/117 (47%)

Query: 13  GAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTR 72
               D       +        A E           +G   ++ LI DIPV++TVE+ R R
Sbjct: 9   DEPMDDLDLLGDDLDFDGPAMADELSSLPQDTALPTGNKSNMGLIRDIPVEVTVEVSRRR 68

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           + +KE++ +   SV+ LD   GEP+DI ING L   G +++   KYGV++  ++   
Sbjct: 69  LPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDGKYGVQVLALVNNE 125


>UniRef50_C6N6Z9 Putative surface presentation of antigens (SPOA) protein n=1
           Tax=Legionella drancourtii LLAP12 RepID=C6N6Z9_9GAMM
          Length = 101

 Score = 89.5 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 48/96 (50%)

Query: 32  KSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
           K    T                + L+ DI V+ TV +G   +TI EL  L  G  + L+ 
Sbjct: 6   KKVNLTEHPPQQTEGQFINKNYLGLVGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQ 65

Query: 92  LAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
              EP++I++N  +IA+GE++   D + V+IT+I +
Sbjct: 66  KTHEPVEIVLNERVIARGELMSHEDHFAVQITEIYS 101


>UniRef50_C5JB71 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=uncultured bacterium RepID=C5JB71_9BACT
          Length = 117

 Score = 89.1 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 66/117 (56%)

Query: 15  MDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMT 74
           M +     L    + + ++ AE           + +   ++ + ++PV++T  LG   + 
Sbjct: 1   MAEDDGAELDMAAAMAGQAKAEAKKSAASPKKAARSDGRMEAVYEVPVEVTAVLGTASLQ 60

Query: 75  IKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131
           + ++L+L +G+VV LD + GEP+DI  N  LIA+GEVVVV D+  ++ITDII  + R
Sbjct: 61  VSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVVVEDRLAIQITDIIRSNIR 117


>UniRef50_Q30RD7 Surface presentation of antigens (SPOA) protein n=15
           Tax=Epsilonproteobacteria RepID=Q30RD7_SULDN
          Length = 111

 Score = 89.1 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 56/98 (57%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           ++    +   +  D   ++D+ V+   +LG T +++ E+L+L +GS++ L   AGE ++ 
Sbjct: 12  EEIFDSESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVET 71

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
            +NG ++ +GEV+V      +RI +++  S  +  LS+
Sbjct: 72  YVNGRILGRGEVMVYEKNLAIRINEVLDSSAVLYHLSK 109


>UniRef50_A3SFT8 Surface presentation of antigens (SPOA) protein n=2
           Tax=Sulfitobacter RepID=A3SFT8_9RHOB
          Length = 114

 Score = 88.8 bits (219), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQG 84
           +Q  T +                    + +D I  + + + V LGR+RM I ELL LT+G
Sbjct: 5   DQDKTQADLTDNNAQDAETKAPAGLDGKSLDAIFGVKLDVRVVLGRSRMPISELLNLTKG 64

Query: 85  SVVALDGLAGEPLDILINGYLIAQGEVVVV-ADKYGVRITDII 126
           SV+ LD   GEP+DI+IN  ++A+G++V V  D  GV + +I+
Sbjct: 65  SVIELDRRVGEPVDIMINDRMVARGDLVRVQGDSLGVALREIV 107


>UniRef50_A4Y0Q2 Flagellar motor switch protein FliN n=1 Tax=Pseudomonas mendocina
           ymp RepID=A4Y0Q2_PSEMY
          Length = 123

 Score = 88.8 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 53/90 (58%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
                        S   QD+     IPV +T+E+  T +T+KEL+ +  GSV+ALD LAG
Sbjct: 23  EPVSEPVAEQAPASLPQQDLSFFGKIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAG 82

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITD 124
           EPLD+ +NG L A+ EVVV+   YG+RI +
Sbjct: 83  EPLDVKVNGALFAKAEVVVMNGNYGLRIVE 112


>UniRef50_O54245 Flagellar motor switch protein fliN n=15 Tax=Rhizobiales
           RepID=FLIN_RHIME
          Length = 198

 Score = 88.8 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 57/86 (66%), Gaps = 3/86 (3%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                SG   ++DLIMDIP+ + + LG +RM +  L+ LT+G+ +ALD   GEP++I++N
Sbjct: 108 ETAPGSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVN 167

Query: 103 GYLIAQGEVVVVAD---KYGVRITDI 125
           G +I +GE+ V+     ++GV++ +I
Sbjct: 168 GRVIGRGEITVLEGDVTRFGVKLLEI 193


>UniRef50_A8AKJ4 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
           BAA-895 RepID=A8AKJ4_CITK8
          Length = 132

 Score = 88.8 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           MSD+ +    +    D   ++   E    + +       Q          ++ + L   I
Sbjct: 1   MSDLQHELSQSLDLDDLNLSDMTQED---TVEGNIRLDLQPETRNTAMTDIRKMALFSRI 57

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
           PV LT+E+    +++ EL+ +   SVV LD +AGEPLDI +NG L  + EVVV+ DKYG+
Sbjct: 58  PVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLNDKYGL 117

Query: 121 RITDIITPS 129
           RI +     
Sbjct: 118 RIIEFNAKE 126


>UniRef50_UPI0001744A0D type III secretion system protein n=1 Tax=Verrucomicrobium spinosum
           DSM 4136 RepID=UPI0001744A0D
          Length = 342

 Score = 88.4 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%)

Query: 38  VFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97
            F            + + L+  + V+LT  +G    T+++L  L  G+ + L   A + +
Sbjct: 252 QFIMSDPAPTPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAPGACIELPTPASQAV 311

Query: 98  DILINGYLIAQGEVVVVADKYGVRITDI 125
            I  NG  I +GE++ + ++ GVRIT++
Sbjct: 312 TICANGRAIGKGELLDIGNRIGVRITEL 339


>UniRef50_C9R9Y4 Surface presentation of antigens (SPOA) protein n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9Y4_AMMDK
          Length = 114

 Score = 88.4 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 30  SSKSAAETVFQQFGGGDV--SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
                ++ VF  F             ++L+  + +++T  LG   +T++ELL L +GSV+
Sbjct: 1   MQAKISKVVFSPFSTEKAWEPKATTALELLHGVTLEVTALLGEATLTVQELLELREGSVI 60

Query: 88  ALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
            LD +AGE +D+L++G    +GEV+V+ +++ VR+  +  P E
Sbjct: 61  RLDRVAGEAVDLLLDGQKFGRGEVMVLNERFVVRVLQVFPPQE 103


>UniRef50_B3RAD9 SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO
           family n=1 Tax=Cupriavidus taiwanensis
           RepID=B3RAD9_CUPTR
          Length = 399

 Score = 88.4 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
           +D  +  D +NGA  +    A   Q      +A                   +  +  + 
Sbjct: 286 ADSTDSTDVSNGAHMEEQDPARQSQPIPHPDAAQPP----------------LSRLDQLE 329

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLA-GEPLDILINGYLIAQGEVVVVADKYGV 120
           V L  E+G   + + EL  +  G V  L        + I+ NG  I  G ++ V ++ GV
Sbjct: 330 VTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAVGNRLGV 389

Query: 121 RIT 123
           RIT
Sbjct: 390 RIT 392


>UniRef50_B1ZR34 Flagellar motor switch protein FliN n=3 Tax=Verrucomicrobia
           RepID=B1ZR34_OPITP
          Length = 84

 Score = 88.0 bits (217), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 57/81 (70%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
             + +D+++D+ VK+TV+LG  ++ ++E+L L+ GSVV L   A +P+ + +N  L+A G
Sbjct: 2   EEKALDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYG 61

Query: 110 EVVVVADKYGVRITDIITPSE 130
           EVVVV D +G++IT+++   +
Sbjct: 62  EVVVVEDNFGIKITELVGSEK 82


>UniRef50_Q6MBC5 Putative flagellar motor switch protein (= type III secretion
           translocase SctQ) n=1 Tax=Candidatus Protochlamydia
           amoebophila UWE25 RepID=Q6MBC5_PARUW
          Length = 445

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRT 71
           N  +D++  E  S  K+ +S+S+  +   +     +            IPV LTVE+GR 
Sbjct: 337 NFTLDEVTEEEQSSPKNNASQSSPASSITENTKTGLITP-------NQIPVNLTVEVGRI 389

Query: 72  RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           +M++  LL+L  G+++ L+    + +D+ ING ++ +GE++ + +  GVR+ ++
Sbjct: 390 QMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVLGVRVLEL 443


>UniRef50_A7K1M2 Flagellar motor switch protein FliN n=17 Tax=Vibrionaceae
           RepID=A7K1M2_VIBSE
          Length = 123

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 23  LSEQKSTSSKSAAETVFQQFG----------GGDVSGTLQDIDLIMDIPVKLTVELGRTR 72
           +SE   T++  A E  F  F             + +   +D+     IPV +T+E+    
Sbjct: 1   MSEAPETNAFDAEELNFDDFQLEDFEAESTLQQEPATAERDLSFFKSIPVTVTLEVASKE 60

Query: 73  MTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           + + +L++  +G+V+ L+ L GEPLD+ +NG L+   EVVVV DKYG+R+ D+   +
Sbjct: 61  IPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLRLIDVHDSA 117


>UniRef50_Q02KI5 Translocation protein in type III secretion n=5 Tax=Pseudomonas
           aeruginosa RepID=Q02KI5_PSEAB
          Length = 309

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 44/97 (45%)

Query: 34  AAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
           + +               +D+  +  +P+ ++ E+GR  + +  L  L  GS++ LD   
Sbjct: 212 STQLELLDMHDTPSLADSEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCAL 271

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
              + IL N   +  GE+V + D+ GVR+T +    E
Sbjct: 272 DGEVRILANQRCLGIGELVRLQDRLGVRVTRLFGHDE 308


>UniRef50_Q1CTU2 Flagellar switch protein n=20 Tax=Helicobacteraceae
           RepID=Q1CTU2_HELPH
          Length = 123

 Score = 86.1 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 51/85 (60%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D   ++D+ +  + ELG T++ + ++LR  +GSV+ L   AGE +D  +NG +I +GEV+
Sbjct: 37  DYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVM 96

Query: 113 VVADKYGVRITDIITPSERMRRLSR 137
           V      +R+ +I+  +  +  L++
Sbjct: 97  VFERNLAIRLNEILDSNAIVYYLAK 121


>UniRef50_Q11M61 Surface presentation of antigens (SPOA) protein n=1
           Tax=Chelativorans sp. BNC1 RepID=Q11M61_MESSB
          Length = 354

 Score = 85.7 bits (211), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 51/110 (46%)

Query: 20  AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELL 79
           A  + E   +   +  ++ + +FG G +       D I D+PV+L       R+T++EL 
Sbjct: 240 AAEIFESAESIIMNEIDSDWSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELR 299

Query: 80  RLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
            L  G+ + L+     P+ IL NG    +G +V + D  GV+++      
Sbjct: 300 ALGPGATLRLNVDLTRPVTILANGAPAGRGYLVQIGDHMGVQLSHWAGTK 349


>UniRef50_O67495 Flagellar motor switch protein fliN n=1 Tax=Aquifex aeolicus
           RepID=FLIN_AQUAE
          Length = 112

 Score = 85.3 bits (210), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 59/111 (53%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
             E   E +    ++  E V ++         ++ I    DIPV++ V +GR   T+ EL
Sbjct: 1   MEEQTKEIQEEKKETPQEEVREEKKEEKKVSVIELIQHFSDIPVEVEVVVGRANKTLGEL 60

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
           L +  GSV+ +D    + +DI +NG LIA+GE+V++  K GV+I +++   
Sbjct: 61  LAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIIDGKIGVKIKEVVKEQ 111


>UniRef50_UPI0001AF390C type III secretion component, putative n=2 Tax=Pseudomonas syringae
           group RepID=UPI0001AF390C
          Length = 353

 Score = 84.9 bits (209), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 35  AETVFQQFGGGDVSGTLQDID-LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLA 93
               + +        T  D+D  + D+P+ L  +LG   +T+ +L  +  GS++ L GLA
Sbjct: 259 PPYTYDRNDLMSELSTDADLDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLA 318

Query: 94  GEPLDILINGYLIAQGEVVVVADKYGVRIT 123
            + +D+++NG  + +GE+V + D  GVR+ 
Sbjct: 319 HDEVDLMVNGRRVGRGELVTIGDGLGVRLL 348



 Score = 40.6 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
           D +  + + L+VE G+  +T  EL  L  G VV LD L    + + +  + 
Sbjct: 184 DPLEGLRLALSVEAGQAPLTCAELRSLLPGDVVMLDTLPDAQVLLRLGHHC 234


>UniRef50_B1K3A4 Flagellar motor switch protein FliN n=1 Tax=Burkholderia
           cenocepacia MC0-3 RepID=B1K3A4_BURCC
          Length = 113

 Score = 84.9 bits (209), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
                 + +     + ++  IPV+LT+E+G   + + +LL    GS V L+ LAGEPL I
Sbjct: 20  DPKSITETASPRDPMRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVI 79

Query: 100 LINGYLIAQGEVVVVADKYGVRITDI 125
            +NG  +  GEVVV  + YG+RI ++
Sbjct: 80  KVNGTPVGLGEVVVSGEHYGLRIIEL 105


>UniRef50_A4J755 Surface presentation of antigens (SPOA) protein n=1
           Tax=Desulfotomaculum reducens MI-1 RepID=A4J755_DESRM
          Length = 128

 Score = 84.9 bits (209), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 12  NGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQ-DIDLIMDIPVKLTVELGR 70
           N    +L+   L   ++    +  +  F           ++  +  I D+ V ++ ELG 
Sbjct: 3   NEKEIELFLSELDGTQTREEAAIKKVRFPPLDSFRQERIIKTSLSHIEDVKVTISAELGE 62

Query: 71  TRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
             +  +E+L L  G+V+ ++  AG+ +++ IN    AQGE+++V DK+ VRI  I +P +
Sbjct: 63  KILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSPKK 122


>UniRef50_C3XFR2 Flagellar motor switch protein FliN n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XFR2_9HELI
          Length = 128

 Score = 84.9 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 52/90 (57%)

Query: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107
              + + + ++D+ V  + +LG T++ + E+L+  +GS++ L   AG  ++I +N  ++ 
Sbjct: 32  EDMMANYEGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVG 91

Query: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137
           +GEV+V      +RI +I+  +  +  ++R
Sbjct: 92  KGEVMVYERNLAIRINEILDSNAIVYYIAR 121


>UniRef50_P57183 Flagellar motor switch protein fliN n=3 Tax=Buchnera aphidicola
           (Acyrthosiphon pisum) RepID=FLIN_BUCAI
          Length = 133

 Score = 84.9 bits (209), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 68/122 (55%)

Query: 4   MNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVK 63
           M+    +++        + +   +        +   +     +    +     I+++PV 
Sbjct: 1   MSKIQKNSDNDKLIDSEKKIPTDQDVDKNLLPQENSKNSTLDNTIDIVDSKKTILNVPVN 60

Query: 64  LTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           +TVELG +R+ IK+ L+ ++GS++ L+    EPL+I +NG+LIA GE+VV+ +KYG+RIT
Sbjct: 61  ITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEEKYGIRIT 120

Query: 124 DI 125
           +I
Sbjct: 121 NI 122


>UniRef50_Q2NR65 Type III secretion apparatus SpaO n=2 Tax=Sodalis glossinidius
           RepID=Q2NR65_SODGM
          Length = 338

 Score = 84.5 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 2   SDMNNPADDNNGAMDDLW--AEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           +D    A  +   + D    A A+  +      +AA T   +   GD +      D + +
Sbjct: 209 NDEATLAAGHISPLPDYASGAAAVHPKVRDGLAAAAPTPTGRLALGDDTAA----DPLAN 264

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYG 119
           +P+ L   L R  +++ E+ +  QG V+ LD    + ++I  NG+L+A GE+V + D+ G
Sbjct: 265 LPLTLEFILQRRYLSLGEIQQFRQGKVLELDPEGEKHIEIRANGHLLALGELVQLEDRLG 324

Query: 120 VRITDI 125
           V + ++
Sbjct: 325 VELMEL 330


>UniRef50_Q2SH51 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH51_HAHCH
          Length = 397

 Score = 84.1 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 41/90 (45%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
           Q             +  + D+PV++  E+ R   T+ ++  L  G  +ALD      + +
Sbjct: 283 QPMTHTTTPNNDAPLQPLHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTL 342

Query: 100 LINGYLIAQGEVVVVADKYGVRITDIITPS 129
           L+    IA+ E+V V D+ G RIT +  P 
Sbjct: 343 LVQSQAIAEAELVQVGDQIGARITRLSLPP 372


>UniRef50_B8CYQ6 Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii
           H 168 RepID=B8CYQ6_HALOH
          Length = 334

 Score = 83.8 bits (206), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDL----IMDIPVKLTVELGRTRMTIKELLRLTQGS 85
                     Q F       T Q I+     +   P+++  E+G+T++T+ +LL L  G 
Sbjct: 223 EPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGD 282

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           V+ LD  A E +DI I   +  QG   V      V+ITD+I+
Sbjct: 283 VIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324


>UniRef50_Q7UIS4 Probable flagellar motor switch protein fliN [Fragment] n=1
           Tax=Rhodopirellula baltica RepID=Q7UIS4_RHOBA
          Length = 144

 Score = 83.8 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 7   PADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTV 66
           P D     +    +E  +E K T       +++++               ++ I   + V
Sbjct: 34  PVDKRCVRIQGRMSENATEDKPTEPSPPTSSMYKEK--------------VLKIRTTVNV 79

Query: 67  ELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
            L   +  ++++L L  GS++  D     PL +   G+ IA GE V + DK+G+R+ +I 
Sbjct: 80  TLAEKKEPLRKILALVPGSMLTFDVHCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIG 139

Query: 127 TPSE 130
            P E
Sbjct: 140 VPKE 143


>UniRef50_A9APA9 Type III secretion system apparatus protein YscQ/HrcQ n=17
           Tax=Burkholderia RepID=A9APA9_BURM1
          Length = 443

 Score = 83.4 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 25  EQKSTSSKSAAETVFQQFGGGDVSGTLQDI-DLIMDIPVKLTVELGRTRMTIKELLRLTQ 83
           E+          T      G     +  D    +  + V L  EL  T M + EL  L  
Sbjct: 333 ERIREMPLEPTRTDTPPATGAAHDASPADAPRALDGLAVDLRFELPPTSMPLGELSALQP 392

Query: 84  GSVVALDGLAGEPL-DILINGYLIAQGEVVVVADKYGVRITDIITPSERMR 133
           G+V+ L     + +  ++ NG LI  G ++ V  K GVR+  +  P+ R R
Sbjct: 393 GAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVVTLTQPAPRER 443



 Score = 41.8 bits (97), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG-LA 93
           A      F     +          ++PV L  E+GRT +T+ EL  +  G ++A++   A
Sbjct: 243 APDALAVFFASAPAARPDAHAAYANLPVPLVFEIGRTELTMAELADVVGGDIIAIERWHA 302

Query: 94  GEPLDILINGYLIA-----QGEVVVVADKYGV-RITDI 125
            E   + +     A      G       +  V RI ++
Sbjct: 303 HEQNLLCVGRVPAAPAWEITGRP--SGSRLTVERIREM 338


>UniRef50_C5CYF0 Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CYF0_VARPS
          Length = 151

 Score = 83.4 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%)

Query: 10  DNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELG 69
           ++   +        + Q        A         G  +  L+D + +  I  +L V +G
Sbjct: 26  ESRARVAQGPGSLPTAQIIALPDLHAGAEGDAANQGGDASILKDWNPLHQIKARLQVCVG 85

Query: 70  RTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
              +++ ELL   +  V+ LD     P+D+ I G ++A+G++V V   + VRIT++
Sbjct: 86  AVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEGKVVARGQLVAVDGHFAVRITEL 141


>UniRef50_C3KNB2 Type III secretion system translocation protein, RhcQ n=1
           Tax=Rhizobium sp. NGR234 RepID=C3KNB2_RHISN
          Length = 351

 Score = 83.4 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 46/80 (57%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
               +  +++ + D+P++L  E+GR    +KE+ R+ +G+V+        P+ IL NG L
Sbjct: 268 QQPPSSGELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSILANGRL 327

Query: 106 IAQGEVVVVADKYGVRITDI 125
           + +GE++ + +  G+R+  +
Sbjct: 328 VGKGELIRIGEGLGIRVVRL 347


>UniRef50_B9Z4S4 Flagellar motor switch protein FliN n=1 Tax=Lutiella nitroferrum
           2002 RepID=B9Z4S4_9NEIS
          Length = 119

 Score = 83.4 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 50/70 (71%)

Query: 56  LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
            +  IPV LT+E+G   +++ +L+ + QGSV+ LD LAGEPLDI +NG +I + EVVV  
Sbjct: 40  FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAG 99

Query: 116 DKYGVRITDI 125
           D YG+R+ ++
Sbjct: 100 DNYGLRVVEL 109


>UniRef50_Q2CGH8 Flagellar motor switch protein FliN n=3 Tax=Rhodobacteraceae
           RepID=Q2CGH8_9RHOB
          Length = 132

 Score = 83.4 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 74/128 (57%), Gaps = 5/128 (3%)

Query: 1   MSDMNNPADDNNGAMDDLWAEAL-SEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMD 59
           M D        + A      + L  E ++   ++  E +  +   GD     + I+ +++
Sbjct: 1   MPDPKTDKPSPDTAAPGQPDDTLLPELEAPEEQTVLENMVGEQVNGDGG---RSIEAMLN 57

Query: 60  IPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD-KY 118
           + +++ + LGR+RM I +LL+L++GS++ LD   GEP+D++++  L+A+G++V V D + 
Sbjct: 58  VGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDNRV 117

Query: 119 GVRITDII 126
           GV +T+I+
Sbjct: 118 GVTLTEIV 125


>UniRef50_A3WGR5 Flagellar motor switch protein n=1 Tax=Erythrobacter sp. NAP1
           RepID=A3WGR5_9SPHN
          Length = 102

 Score = 83.0 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 51/82 (62%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +    D+ V+L+VELGRT M +K++L + +GSVV L+ L  E LD+  NG ++A+GEV+ 
Sbjct: 8   LKRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIA 67

Query: 114 VADKYGVRITDIITPSERMRRL 135
              ++ +RI +++        +
Sbjct: 68  QDGRFALRIVELVGDPSAEEPI 89


>UniRef50_A4U4R5 Surface presentation of antigens (SPOA) protein n=1
           Tax=Magnetospirillum gryphiswaldense RepID=A4U4R5_9PROT
          Length = 90

 Score = 82.6 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 44/75 (58%)

Query: 55  DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
           + +  + V+    LG   + I +LL+L +G+VV LD    +P+D+ +N   IA+ EVVVV
Sbjct: 14  EAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVV 73

Query: 115 ADKYGVRITDIITPS 129
            D   V +T+++  +
Sbjct: 74  EDHLAVTVTEVLKRA 88


>UniRef50_D2R2R8 Surface presentation of antigens (SPOA) protein n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2R8_9PLAN
          Length = 329

 Score = 82.6 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 46/102 (45%)

Query: 35  AETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
           A           +         I+ I V + V L  T++ +K ++ L  GS++  +    
Sbjct: 218 ASPPPSDNVEERIYKLPPYTRSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCD 277

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLS 136
             L + +  + +A GE V V +K+G+R+T ++ P ER   + 
Sbjct: 278 SELSLQVGEHEVAIGEAVKVGEKFGLRLTSMVMPPERFFAVR 319


>UniRef50_Q8KA38 Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola
           (Schizaphis graminum) RepID=FLIN_BUCAP
          Length = 133

 Score = 82.6 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 46/69 (66%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           + DI + +TVELG++++ IK+LL  ++GS++ L     +PL +  N  LIA GE+V   +
Sbjct: 54  LFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVFSNN 113

Query: 117 KYGVRITDI 125
           KYG+RI  I
Sbjct: 114 KYGIRIISI 122


>UniRef50_Q67MU5 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67MU5_SYMTH
          Length = 227

 Score = 82.2 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 47/68 (69%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++DI + L+VELG+ R+ + E+L +  GSV+ LD LA EPL++ +NG      EV+ + +
Sbjct: 150 LLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIGE 209

Query: 117 KYGVRITD 124
           KYG+RI +
Sbjct: 210 KYGIRIVE 217


>UniRef50_C1SLE0 Flagellar motor switch/type III secretory pathway protein n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SLE0_9BACT
          Length = 95

 Score = 82.2 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 46/68 (67%)

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
            + VELGR  + ++ELL   +G+++     +GEP+D L+NG  +A GE++V+ +++ VRI
Sbjct: 17  DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDERFAVRI 76

Query: 123 TDIITPSE 130
           T+I+   +
Sbjct: 77  TEILEKED 84


>UniRef50_D2LD12 Surface presentation of antigens (SPOA) protein n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LD12_RHOVA
          Length = 120

 Score = 81.8 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
             G    ++ ++ IP+ L V LG   M I ++ +L +G+V+ LD   G+ +D++ING +I
Sbjct: 33  KGGDPGSLERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRII 92

Query: 107 AQGEVVVVAD---KYGVRITDIIT 127
           A+GE+VV+ +   ++GV +T++I 
Sbjct: 93  AKGEIVVLDEEGSRFGVTLTEMID 116


>UniRef50_B1FB78 Type III secretion system apparatus protein YscQ/HrcQ n=1
           Tax=Burkholderia ambifaria IOP40-10 RepID=B1FB78_9BURK
          Length = 309

 Score = 81.8 bits (201), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDID----LIMDIPVKLTVELGRTRMTIKELLRLTQ 83
             S +    T+ +Q            +D     +  +PVKL     +  +T+ ++ RL  
Sbjct: 202 EISIEGNTMTMHEQASEMRGDSQPGMMDGQAFQVDALPVKLEFAFRQRELTVADVARLHP 261

Query: 84  GSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI--TDIITPS 129
           G+V+ LD  A   + I  NG  +A GE++ V ++  V I   +++ P 
Sbjct: 262 GAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLAVEIQSIELVDPK 309


>UniRef50_A9DR59 Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex
           HEL-45 RepID=A9DR59_9RHOB
          Length = 154

 Score = 81.4 bits (200), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 20/145 (13%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGG----------------- 44
            D+ +P DD+               +    ++ A       GG                 
Sbjct: 4   PDLQSPKDDDTSTEGKASEATPKTTEQDQPRADAFGNTASLGGDDAGVFPQLDTEDSRNA 63

Query: 45  --GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                      I+ ++++ + + + LG+ RM I  LL LT+GS+V L+   G P+D++++
Sbjct: 64  LAPRPEAGGAGINAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVS 123

Query: 103 GYLIAQGEVVVVA-DKYGVRITDII 126
             L+A+G++V V  D+ GV +T I+
Sbjct: 124 DRLVARGDLVKVGEDRLGVSLTQIV 148


>UniRef50_A3ZT50 Probable flagellar motor switch protein fliN n=1
           Tax=Blastopirellula marina DSM 3645 RepID=A3ZT50_9PLAN
          Length = 309

 Score = 81.4 bits (200), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 48/80 (60%)

Query: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116
           ++ I +++ V L   +M ++E+  L  GS++  D    E +D+ +  + IAQGE V + D
Sbjct: 224 LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGD 283

Query: 117 KYGVRITDIITPSERMRRLS 136
           K+G+R+T+++ P ER   + 
Sbjct: 284 KFGMRVTNVLLPEERFISIK 303


>UniRef50_B0K1R9 Flagellar motor switch protein FliM n=14 Tax=Clostridia
           RepID=B0K1R9_THEPX
          Length = 332

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
            K   +  F      +          I    + LT +LG T +T+KE L    G ++ LD
Sbjct: 229 PKLTTKFWFSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDIIMLD 288

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
               EP+DI+I+  +  +G   +  +KY VRIT++I   +
Sbjct: 289 KHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGD 328


>UniRef50_Q48IQ1 Type III secretion component, putative n=1 Tax=Pseudomonas syringae
           pv. phaseolicola 1448A RepID=Q48IQ1_PSE14
          Length = 301

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 36  ETVFQQFGGGDVSGTLQDID-LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
              F +           D+D  + ++P+ L  +LG   +T+ +L  +  GS++ L G   
Sbjct: 208 SHTFNRNDSMSEMTDGSDLDTSLDELPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRH 267

Query: 95  EPLDILINGYLIAQGEVVVVADKYGVRIT 123
           + +D+++NG  I +GE+V + D  GVR+ 
Sbjct: 268 DEVDLMVNGRRIGRGELVSIGDGLGVRLL 296



 Score = 39.5 bits (91), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
                Q +D ++   + L+VE G+  +T  EL  L  G VV LD LA   + + +   
Sbjct: 127 AVTRPQPLDALV---LTLSVEAGQAPLTTTELHSLVPGDVVMLDTLADTQVLLRLGKR 181


>UniRef50_B2A358 Flagellar motor switch protein FliM n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A358_NATTJ
          Length = 333

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 42/84 (50%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
              +    + +    V +  EL RTR+++KE L L +G V++L+      +D+++     
Sbjct: 245 EEESQALKNRLHKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTK 304

Query: 107 AQGEVVVVADKYGVRITDIITPSE 130
            +G+   + +K  V+IT I+   +
Sbjct: 305 FKGKPGSIKNKLAVQITQIVREGD 328


>UniRef50_B8DI82 Flagellar motor switch protein n=20 Tax=Listeria RepID=B8DI82_LISMH
          Length = 515

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 1   MSDMNNPADDNNGA--MDDLWAEALSEQKSTSSKSAAETV-FQQFGGGDVSGTLQDID-- 55
           M  + NPA     A  M  + A+ ++E+++T+     E     +     V    + +   
Sbjct: 382 MYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAVIEEKETLSEM 441

Query: 56  --LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
             ++ DIPV L V  G  ++ +++ +   +  V+ L     EPL + +NG  I +G +V 
Sbjct: 442 EQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVR 501

Query: 114 VADKYGVRITDII 126
           V D +G+++T+++
Sbjct: 502 VDDHFGIQMTELV 514


>UniRef50_Q1MP57 Putative translocation protein in type III secretion n=1
           Tax=Lawsonia intracellularis PHE/MN1-00
           RepID=Q1MP57_LAWIP
          Length = 368

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 1   MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDI 60
           ++D+  P D  NG    +     +       ++A     +Q G       +  +D     
Sbjct: 248 VNDVGYPEDQGNGGEQFVENHTEAPNSHGQQRTARANSGRQSGQQSSGIDVSGLD----- 302

Query: 61  PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
            + +  EL R  MT++ +  L  G   AL      P+ + +NG  I  G +V +    GV
Sbjct: 303 -LPVVFELERQFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLVDLNGSLGV 361

Query: 121 RITDII 126
           ++  ++
Sbjct: 362 QVVQVM 367


>UniRef50_Q0C2D2 Flagellar motor switch protein FliN n=1 Tax=Hyphomonas neptunium
           ATCC 15444 RepID=Q0C2D2_HYPNA
          Length = 89

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 52/82 (63%)

Query: 47  VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLI 106
                    ++MD+PV++ V LG  R+ ++EL+ L+ G +VAL+    EP+DI ++G L+
Sbjct: 3   EPKNPALEKMLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLV 62

Query: 107 AQGEVVVVADKYGVRITDIITP 128
           A+G++VV   + GV +++II  
Sbjct: 63  ARGKLVVTDGQLGVTLSEIIDS 84


>UniRef50_D2TZ40 Type III secretion apparatus protein YscQ,HrcQ,SpaO n=1
           Tax=Arsenophonus nasoniae RepID=D2TZ40_9ENTR
          Length = 292

 Score = 81.4 bits (200), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 40/73 (54%)

Query: 58  MDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADK 117
            DIP+ L   L + ++ + EL  + QG V+  D  A   + I+ NG LIA+G ++ + D+
Sbjct: 220 DDIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDR 279

Query: 118 YGVRITDIITPSE 130
            GV IT +    +
Sbjct: 280 LGVEITHLFHNEK 292


>UniRef50_A2S1P2 Type III secretion system protein BsaV n=40 Tax=pseudomallei group
           RepID=A2S1P2_BURM9
          Length = 335

 Score = 81.1 bits (199), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 8   ADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVE 67
               + A+D L   +      TS  ++ +T   +               I  +PV L   
Sbjct: 212 EPLADSAIDALHDASHDASHDTSHDTSHDTSHDEPTAAHAPPAFD----IDALPVTLEFV 267

Query: 68  LGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
           L   R+T+++L     G V+ L   A   + I  NG    +GE++ V ++  V +  +
Sbjct: 268 LHDERVTVEQLAGCHLGMVLPL-RGAPGEVTIRANGRPFGRGELIQVGEQLAVEVKAL 324


>UniRef50_B1TBB1 Surface presentation of antigens (SPOA) protein n=1
           Tax=Burkholderia ambifaria MEX-5 RepID=B1TBB1_9BURK
          Length = 111

 Score = 80.7 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 18  LWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKE 77
           + + A SE+         E    +          + +DL+ D+ V L V LG   + +KE
Sbjct: 1   MTSHATSERSVVMRVDLPEHEPAETTEARPVAHPR-LDLVGDVIVSLDVHLGSVDLAVKE 59

Query: 78  LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           L+ L  GS+V LD    + +D+ +N   +A+ E+V V D++G+RI +I+  
Sbjct: 60  LMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVAVDDRFGIRIVEIVEE 110


>UniRef50_Q67K08 Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67K08_SYMTH
          Length = 308

 Score = 80.7 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 45/101 (44%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSV 86
           +   S+ + ++   +      S        + + P+ +   LG+TRM + E L L  G V
Sbjct: 208 EPVLSRLSPQSWLAETKHKSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDV 267

Query: 87  VALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
           + LD   G  L + +   L  Q +  VV ++  V+IT  +T
Sbjct: 268 IRLDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRVT 308


>UniRef50_B1LY10 Surface presentation of antigens (SPOA) protein n=9
           Tax=Alphaproteobacteria RepID=B1LY10_METRJ
          Length = 122

 Score = 80.7 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 43  GGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
                    + + +   + V LTV LGR RM +  LLR+ +G+V+ L+    + ++IL N
Sbjct: 11  DRTGGETGWRAVAVFETLKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILAN 70

Query: 103 GYLIAQGEVVVVADKYGVRITDIITPSERM 132
            + IA+G++VV  D+  V +T++I  +  +
Sbjct: 71  DHPIARGQIVVTGDRISVEVTELIRKAASI 100


>UniRef50_B8I3P2 Flagellar motor switch protein FliM n=2 Tax=Clostridium
           RepID=B8I3P2_CLOCE
          Length = 328

 Score = 80.3 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDL-IMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           +    K + +  F       V     DI+  I    V +   LGRT ++I E L L  G 
Sbjct: 223 EPIMPKLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGD 282

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           V+ LD      L+IL+      + +  V  +K  ++IT+++   E
Sbjct: 283 VLPLDTNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREE 327


>UniRef50_A7GNF7 CheC, inhibitor of MCP methylation n=70 Tax=Bacillales
           RepID=A7GNF7_BACCN
          Length = 554

 Score = 80.3 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%)

Query: 21  EALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
            ++ E+        A    +            D  ++ ++ + +    G T  TI+++L 
Sbjct: 449 ASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILS 508

Query: 81  LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
           L +   V LD    EP+ I +N  L+A GE+V V   +GV++T
Sbjct: 509 LHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVDGFFGVKVT 551


>UniRef50_Q7NUS2 Surface presentation of antigens; secretory proteins n=1
           Tax=Chromobacterium violaceum RepID=Q7NUS2_CHRVO
          Length = 296

 Score = 80.3 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 43/89 (48%)

Query: 39  FQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98
            +       +   + +  +  +PV+L   L ++ +T+ EL  L + +V+ L   A   ++
Sbjct: 202 MEWQNEMAAAAETRPLADLDRLPVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVE 261

Query: 99  ILINGYLIAQGEVVVVADKYGVRITDIIT 127
           +  NG L+ +GE+V +  + GV +   + 
Sbjct: 262 LRANGALLGRGELVQLDGRLGVEVAQWLG 290


>UniRef50_P74860 Secretion system apparatus protein ssaQ n=37 Tax=Salmonella
           enterica RepID=SSAQ_SALTY
          Length = 322

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 36  ETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGE 95
           ET+         S     ++ +  IP ++  E+GR  + I +L +L  G V+ + G    
Sbjct: 227 ETLLASGSPMSKSDGTSSVE-LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAP 285

Query: 96  PLDILINGYLIAQGEVVVVADKYGVRITD 124
            + I +N  +I QGE++   +++ VRIT 
Sbjct: 286 EVTIRVNDRIIGQGELIACGNEFMVRITR 314


>UniRef50_Q01PQ3 Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01PQ3_SOLUE
          Length = 82

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 47/76 (61%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
              +++  + D+PV + VEL R  MT +++L+L +G V+     AGE +DI I G L   
Sbjct: 2   TPKEEVAPLGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGS 61

Query: 109 GEVVVVADKYGVRITD 124
           GE+VV+ +  GVRITD
Sbjct: 62  GEIVVIENTLGVRITD 77


>UniRef50_D1B6B3 Flagellar motor switch protein FliM n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6B3_THEAS
          Length = 335

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDIDL-IMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           +    K +++  F   G  +V G  + I+  +  + V + +ELG T +++ ++L+L +G 
Sbjct: 223 EPMIDKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGD 282

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
           V+ LD    +PL + +   +    E       Y  R+ ++++  E +
Sbjct: 283 VIRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEEGL 329


>UniRef50_UPI00016A9827 RhcQ protein n=2 Tax=Burkholderia oklahomensis RepID=UPI00016A9827
          Length = 104

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%)

Query: 31  SKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
             + +++   +F          D  L+ DIP+ L   +GR R T+ EL  +T G V+ L 
Sbjct: 6   DSAQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELG 65

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
                 + I  +G  I  GE V +  +  V +  +
Sbjct: 66  RNPHGQVSIEAHGVTIGYGEFVEIGSRVAVELIRM 100


>UniRef50_Q0C5L8 Putative flagellar motor switch protein FliN n=1 Tax=Hyphomonas
           neptunium ATCC 15444 RepID=Q0C5L8_HYPNA
          Length = 99

 Score = 79.1 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 37  TVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96
           T F      D SG       I  +PV +TV +G+ R++++E+L L   SV+AL     +P
Sbjct: 2   TEFDGQDRRDPSGRNSYRRSIYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDP 61

Query: 97  LDILINGYLIAQGEVVVVAD-KYGVRITDIITPS 129
           +D+ I+  LIA+GE+V   D +  V+I +II  +
Sbjct: 62  VDLFIDDKLIAKGELVETDDGQIAVKIVEIIEKA 95


>UniRef50_B2Q5J4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q5J4_PROST
          Length = 308

 Score = 79.1 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 26  QKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           +++ +  +    + Q+    D      D++    + +KLT  LG+T +T+ EL  +  G+
Sbjct: 202 EETIAPIADESALLQEETFSDEVVKPFDVNA---MTIKLTFVLGQTEITLNELADIQPGA 258

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVA--DKYGVRITDIITPSER 131
           V ++       + +  N  LIA+GE++ +   D+ G+ IT +    ++
Sbjct: 259 VYSIGENKEREVKVYANKQLIAEGELIYIGESDELGLEITRLAHLGDK 306


>UniRef50_UPI00016C4201 hypothetical protein GobsU_09164 n=1 Tax=Gemmata obscuriglobus UQM
           2246 RepID=UPI00016C4201
          Length = 117

 Score = 79.1 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 56/110 (50%)

Query: 19  WAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKEL 78
            AE      +     A +  F +      +G    ++ + D+P+ +T  LGR  + I E+
Sbjct: 1   MAETTPTDPADPGVVARQAEFPRLEPRAGTGPGSTLESLRDVPITITARLGRAVLPIGEI 60

Query: 79  LRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITP 128
           L L  GSVV L+ +   P+++ + G   A GEVVVV + + VRI +++ P
Sbjct: 61  LTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVVGEHFAVRIKNLLPP 110


>UniRef50_A6Q2N5 Flagellar motor switch protein FliN/FliY n=1 Tax=Nitratiruptor sp.
           SB155-2 RepID=A6Q2N5_NITSB
          Length = 83

 Score = 79.1 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 50/81 (61%)

Query: 45  GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGY 104
               G   D  L+ DI +K++V LG T+  I E+L L +G V+ L+    + +D+++N  
Sbjct: 2   EKEIGEQVDFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEK 61

Query: 105 LIAQGEVVVVADKYGVRITDI 125
            +A GE+VV+ DKYGVRI D+
Sbjct: 62  KMAIGEIVVINDKYGVRIVDL 82


>UniRef50_B1K4V5 Type III secretion system apparatus protein YscQ/HrcQ n=1
           Tax=Burkholderia cenocepacia MC0-3 RepID=B1K4V5_BURCC
          Length = 364

 Score = 78.7 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 28  STSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVV 87
            T             G  D          + ++ + ++ E+    + + +L  L  G V+
Sbjct: 263 DTEPAMTDRNDHPVPGAPDAETQTS----LDELELPVSFEIETVTLPLAQLSALRPGYVI 318

Query: 88  ALDGLAGEP-LDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
            L G   +  + +L  G LI  GE+V V ++ GVR+ D+    +
Sbjct: 319 ELRGTLRDARIRLLAYGQLIGIGELVTVGEQLGVRVIDVFGSHD 362


>UniRef50_A3NFV2 Flagellar motor switch/type III secretory pathway protein n=9
           Tax=Betaproteobacteria RepID=A3NFV2_BURP6
          Length = 115

 Score = 78.7 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 49/76 (64%)

Query: 50  TLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109
                 L+  IPV+LT+E+G   +++ EL+ + +G+V+ LD LAGEPL + +NG  +   
Sbjct: 32  RRDPRQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHA 91

Query: 110 EVVVVADKYGVRITDI 125
           EVVV  + YG++I D+
Sbjct: 92  EVVVSGENYGLKIIDL 107


>UniRef50_B6WRL8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
           29098 RepID=B6WRL8_9DELT
          Length = 398

 Score = 78.7 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 10/125 (8%)

Query: 2   SDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIP 61
            DM +P  +         AE  SE   +  + A   V Q  G    S T++    +  + 
Sbjct: 263 PDMGDPGREP--------AEKGSEDGMSEERLAPTGVVQSDGAAAESATVEPAS-VGALE 313

Query: 62  VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP-LDILINGYLIAQGEVVVVADKYGV 120
           + +  E+GR  + + EL  L  G  +AL G    P +DI + G L+AQG +V V    GV
Sbjct: 314 LPVVFEIGRLHLRLDELAALVPGHTLALGGETPSPVVDIRVAGQLLAQGRLVDVGGIPGV 373

Query: 121 RITDI 125
           +IT +
Sbjct: 374 QITRM 378


>UniRef50_Q0ANV1 Surface presentation of antigens (SPOA) protein n=3
           Tax=Alphaproteobacteria RepID=Q0ANV1_MARMM
          Length = 99

 Score = 78.4 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 53  DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112
           D+  I  + V+++V LGR++M I++ LR+ +G+V+ LD    + + IL N + IA+G+VV
Sbjct: 17  DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVV 76

Query: 113 VVADKYGVRIT 123
           +  D+  V IT
Sbjct: 77  IQGDRIAVSIT 87


>UniRef50_C6CGS2 Type III secretion system apparatus protein YscQ/HrcQ n=2
           Tax=Dickeya RepID=C6CGS2_DICZE
          Length = 387

 Score = 78.4 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 33  SAAETVFQQFGGGDVSGTLQDID--LIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALD 90
           ++  + + ++G  D       +    +  + + LTV  G   +T+++L +L  G+V+ L 
Sbjct: 280 ASEASPYAEYGAPDGDNPAGALSGYALPPLTLALTVRCGYLTLTLQDLQQLAPGTVLTLQ 339

Query: 91  GLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
                   +      +A GE+V V  + G++IT 
Sbjct: 340 QATPGEATLYHGEQPLALGELVDVEGRLGLQITR 373


>UniRef50_A4XNA3 Surface presentation of antigens (SPOA) protein n=1 Tax=Pseudomonas
           mendocina ymp RepID=A4XNA3_PSEMY
          Length = 133

 Score = 78.4 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 8   ADDNNGAMDDLWAEALSE-----QKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPV 62
           + ++   M ++ A+AL E           +        +         +  +  I  +P+
Sbjct: 7   SQESLQEMAEMDADALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSIAHLPL 66

Query: 63  KLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
           +LT+  G+  +++ +L +L  GSV+ + G+A     +     ++ +GE+V V  + G++I
Sbjct: 67  QLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELVDVDGRLGLQI 126

Query: 123 TDIIT 127
           T + T
Sbjct: 127 TRMAT 131


>UniRef50_A7HWV0 Surface presentation of antigens (SPOA) protein n=1
           Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWV0_PARL1
          Length = 78

 Score = 78.4 bits (192), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 48/77 (62%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           ++ + ++ V+L+V LG++ M I +LL++ +G+V+ L     E + +L N   IA+GE++V
Sbjct: 1   MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60

Query: 114 VADKYGVRITDIITPSE 130
             ++  V IT ++   E
Sbjct: 61  QGERVAVSITTVLAGGE 77


>UniRef50_A1TJB9 Type III secretion system apparatus protein YscQ/HrcQ n=4
           Tax=Acidovorax RepID=A1TJB9_ACIAC
          Length = 352

 Score = 78.0 bits (191), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQ-QFGGGDVSGTLQDIDLIMDIPVKL 64
           +    +     D +AE   E  +     AAE          +   T   +  I  I V +
Sbjct: 217 SEIALHAAPQADAFAEPADEDGAPDPAGAAEEAAPCSGSDAEPEATPLPLTDIGGIRVPV 276

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEP-LDILINGYLIAQGEVVVVADKYGVRI 122
            +E+   R+ + EL  L  G++V L   A +  + ++ +G ++  G +VV+ D  GVRI
Sbjct: 277 AIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVVIGDHLGVRI 335


>UniRef50_A0NWB8 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae
           RepID=A0NWB8_9RHOB
          Length = 88

 Score = 78.0 bits (191), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 49/83 (59%)

Query: 54  IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113
           +    +I V ++V LG   M + +LLR+ +G+V+ LD    E + I  N  L+A+G+VV+
Sbjct: 1   MTTFDEIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVL 60

Query: 114 VADKYGVRITDIITPSERMRRLS 136
           + ++ G+ IT+++     +R + 
Sbjct: 61  LGERIGISITEVLMRPPDIRPMR 83


>UniRef50_UPI0001C312B8 CheC, inhibitor of MCP methylation n=1 Tax=Conexibacter woesei DSM
           14684 RepID=UPI0001C312B8
          Length = 301

 Score = 78.0 bits (191), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 40  QQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDI 99
              G GDV   +   D + DI V++  ELGRTR+ + +   +  GSV+ LD  A +P+D+
Sbjct: 196 SDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDL 255

Query: 100 LINGYLIAQGEVVVVAD-KYGVRITDIITPS 129
            +NG   A G +V+  D ++ +R+ ++    
Sbjct: 256 YVNGLRFASGTLVLTDDGEWALRLAEVAGRD 286


>UniRef50_A2S1D1 Type III secretion inner membrane protein SctQ n=66
           Tax=Burkholderia RepID=A2S1D1_BURM9
          Length = 645

 Score = 78.0 bits (191), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 6   NPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDL--------I 57
           +PA        +  A+   +  + S+  ++         G  +                +
Sbjct: 510 SPAAVPAEFPAEFPADRAGDLPAPSAAHSSPGSLAGLPAGLQADAPPRDARYAAPEPADL 569

Query: 58  MDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGE-PLDILINGYLIAQGEVVVVAD 116
            ++ + + VE+    ++I EL  L  G V+ L   A + P+ ++  G  I  G +V V  
Sbjct: 570 GEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGA 629

Query: 117 KYGVRITDIITPS 129
             GVRI  +    
Sbjct: 630 HLGVRIDRMAGDD 642


>UniRef50_Q56022 Surface presentation of antigens protein spaO n=52 Tax=Salmonella
           enterica RepID=SPAO_SALTI
          Length = 303

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%)

Query: 42  FGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILI 101
               + + T + +  +  +PVKL   L R  +T+ EL  + Q  +++L       ++I+ 
Sbjct: 212 EEENNTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMA 271

Query: 102 NGYLIAQGEVVVVADKYGVRITDIITPS 129
           NG L+  GE+V + D  GV I + ++ S
Sbjct: 272 NGVLLGNGELVQMNDTLGVEIHEWLSES 299


>UniRef50_Q1IR63 Flagellar motor switch FliN n=1 Tax=Candidatus Koribacter
           versatilis Ellin345 RepID=Q1IR63_ACIBL
          Length = 252

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 44/66 (66%)

Query: 65  TVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
           T+  G+  M ++++L L  GSVV LD    +P+++L++G +IA+G VVVV   YG+R+ +
Sbjct: 186 TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVDGNYGLRVAE 245

Query: 125 IITPSE 130
           +   +E
Sbjct: 246 VGAFAE 251


>UniRef50_D2TXN7 Type III secretion component protein SctQ n=1 Tax=Arsenophonus
           nasoniae RepID=D2TXN7_9ENTR
          Length = 325

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 44/97 (45%)

Query: 33  SAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGL 92
           S+ +           +   Q +  + +I + +  E+GR  + ++ L  L++GS++ L   
Sbjct: 203 SSHQLELINMYSETDNLANQSLTNLEEIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVP 262

Query: 93  AGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
               + I+ N   +  G++V +  + G+++ ++    
Sbjct: 263 VNGDVRIIANQQPLGTGQLVEIQGRLGIKVVELFAKK 299


>UniRef50_C0QPA3 Flagellar motor switch phosphatase FliY n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QPA3_PERMH
          Length = 79

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 45/77 (58%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
               DI  + D+ VK+T E+GR +    E++ L +G ++ LD    + +++ +   L A 
Sbjct: 2   SQEHDISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAV 61

Query: 109 GEVVVVADKYGVRITDI 125
           GE++V  +KYG+R+ D+
Sbjct: 62  GELIVANEKYGIRVVDL 78


>UniRef50_B1T0N2 Type III secretion system apparatus protein YscQ/HrcQ n=1
           Tax=Burkholderia ambifaria MEX-5 RepID=B1T0N2_9BURK
          Length = 377

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
               A E         D +  +     I  + V +  E+    + I +L  + QG V+ L
Sbjct: 277 DPFMANEADHPGNDTPDRNDPV----AIGALEVPVNFEIDTVALPIDQLAAMRQGYVIEL 332

Query: 90  DGLAGE-PLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
                +  + +  +  +I  GE+V V D  GVRI  +    +
Sbjct: 333 SRTTSDMQVRLTAHSQVIGHGELVSVGDHLGVRILQMAQRDD 374


>UniRef50_C7DF35 Flagellar motor switch protein FliN n=1 Tax=Thalassiobium sp. R2A62
           RepID=C7DF35_9RHOB
          Length = 94

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 49  GTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQ 108
            +  D     D+P+++T+ +GRT  T++ELL L + +++ LD    +P+DI +   LIA+
Sbjct: 5   PSQNDGPNFSDVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIAR 64

Query: 109 GEVVVVAD----KYGVRITDIITPSERMRR 134
           GE+  + D    +  VR+T+II P    R+
Sbjct: 65  GELQELEDTNISQLAVRLTEIIDPPSGSRK 94


>UniRef50_Q8GKQ6 FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP RepID=Q8GKQ6_9THEM
          Length = 165

 Score = 77.2 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 27  KSTSSKSAAETVFQQFGGGDVSGTLQDI-DLIMDIPVKLTVELGRTRMTIKELLRLTQGS 85
           +    K   ++ F+          ++ + + +    + +   +G T +T+ E+L L  G 
Sbjct: 57  EPIGEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGD 116

Query: 86  VVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
           V+ L     EP+ + +NG     G+       Y V+IT++I   +
Sbjct: 117 VIRLKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIEEPK 161


>UniRef50_Q3JLG5 SctQ n=18 Tax=pseudomallei group RepID=Q3JLG5_BURP1
          Length = 435

 Score = 76.8 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 30  SSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVAL 89
           S + +      Q   G    T  +   I ++ + +  E+    + I +L  L  G V+ L
Sbjct: 331 SKELSMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIEL 390

Query: 90  DGLAGEP-LDILINGYLIAQGEVVVVADKYGVRITDIITP 128
                +  L ++++G  +  GE+V V +  GVRI  +   
Sbjct: 391 PVAVTDARLRLVVHGQTVGYGELVAVGEHLGVRIIRMAHR 430


>UniRef50_B4R925 FliN family protein n=8 Tax=Alphaproteobacteria RepID=B4R925_PHEZH
          Length = 108

 Score = 76.8 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 46/79 (58%)

Query: 46  DVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105
            ++ +   +  +  + V++ V LGR  + +++LLR+ +G+V+ LD    E + IL N + 
Sbjct: 18  PLAWSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHP 77

Query: 106 IAQGEVVVVADKYGVRITD 124
           +A+GE+ +  DK  + +T 
Sbjct: 78  VARGEIQISDDKIAIAVTR 96


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.308    0.155    0.374 

Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 786,065,524
Number of Sequences: 3077464
Number of extensions: 36168622
Number of successful extensions: 94059
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 92654
Number of HSP's gapped (non-prelim): 1372
length of query: 137
length of database: 1,040,396,356
effective HSP length: 102
effective length of query: 35
effective length of database: 726,495,028
effective search space: 25427325980
effective search space used: 25427325980
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 87 (37.9 bits)
