>ss_pred
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEECCCHHHHHHHHCC
>ss_conf
96232756566553211103320600024565656344322245676764012466507614899999436750999953798979985877887089999997999999999999777899860698899885239
>batch____
MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>UniRef50_P26419(1-137:137) Flagellar motor switch protein fliN n=125 Tax=Enterobacteriaceae RepID=FLIN_SALTY  E=1e-66 s/c=1.85 id=89% cov=101%
MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>UniRef50_Q8D3E9(1-135:135) FliN protein n=3 Tax=Enterobacteriaceae RepID=Q8D3E9_WIGBR   E=1e-28 s/c=0.94 id=48% cov=99%
MNDIKKePEKIKNDSVEDLNNDDEIKELKANSEEIKEIDSSKIKNKKLS---EDINLILDIPIKMTIELGRTKMTIRDLLLLKRDSIVTLDGEIGEPLDILINDYLVARGEVVVMKERYGIKILDIITPEERIRRLNR
>UniRef50_B5YIZ3(21-138:139) Flagellar motor switch protein FliN n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ3_THEYD  E=2e-26 s/c=1.02 id=50% cov=85%
-------------------AKALEMEKAMKAKEEVQSPhIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNEKFGIRITDIISPQERVKQL--
>UniRef50_Q2LT02(35-162:163) Flagellar motor switch protein n=2 Tax=Deltaproteobacteria RepID=Q2LT02_SYNAS  E=5e-26 s/c=0.92 id=45% cov=94%
-------SDDDNFGWEDVKEELAQSQVKTPKVEVSPADFKEIPAGPKMDPQLDLDFILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNEKFGIRLTDIVSPAERVNKL--
>UniRef50_Q6MI47(11-121:122) Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria RepID=Q6MI47_BDEBA  E=4e-24 s/c=1.01 id=51% cov=82%
---------------DQLVAEAAGMAESSGRKASSEMPTHKD---------RNLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPAERVEQL--
>UniRef50_B2V6S4(44-189:194) Flagellar motor switch protein FliN n=3 Tax=Sulfurihydrogenibium RepID=B2V6S4_SULSY  E=3e-19 s/c=0.66 id=39% cov=99%
-SEMLNESGKKEGSQEDLaaqWSEMLHEEKSESvDANTHQTPLKEsekkesFTKEEFSPEiLNKLDILLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGELYQVDDNFAIKITEILTKEERVRLVS-
>UniRef50_A6Q2L3(1-131:133) Flagellar motor switch protein FliN n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2L3_NITSB  E=4e-15 s/c=0.63 id=34% cov=91%
MSEETNPSPEEQNseeqpelSPDELMAQQFA-QESYGSETEEEDRIEK----------SKFSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGLKITHVVTPEERLKIL--
>UniRef50_Q0AEF2(58-157:157) Flagellar motor switch protein FliN n=12 Tax=Proteobacteria RepID=Q0AEF2_NITEC  E=8e-33 s/c=1.41 id=70% cov=66%
------------------------------------------------DTRNDIDMILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRKLNR
>UniRef50_Q2NX05(1-134:134) Flagellar motor switch protein FliN n=5 Tax=Enterobacteriaceae RepID=Q2NX05_SODGM  E=5e-32 s/c=1.03 id=62% cov=80%
----------------------------TACPAPSRPEFPPASTTEgGSPLTEDLSLILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGEQYGVRIADIVTPAERMRRLSR
>UniRef50_C7R0I7(140-256:259) Flagellar motor switch protein FliN n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0I7_JONDD  E=1e-31 s/c=1.17 id=42% cov=85%
---------------PSPAASARTAQAEPSAPSPTEPEIRPFTPPMMgSGTGDDkLRLLYDVEMTLTVEIGRAKLPVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIIDTTE-------
>UniRef50_B8FK37(1-118:119) Flagellar motor switch protein FliN n=3 Tax=Bacteria RepID=B8FK37_DESAA  E=2e-30 s/c=1.13 id=47% cov=87%
-----------------MEEEALQQEMNENLPAENMTDGLPAAGDADADGDGDLDFILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVVVNEKFGVRLTDIVSPQERIKSL--
>UniRef50_B2S3V9(219-345:348) Flagellar motor switch protein n=2 Tax=Treponema pallidum RepID=B2S3V9_TREPS  E=3e-29 s/c=1.02 id=39% cov=93%
---MQRPQAQVGNSQMG--GVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVTEILSPGERI-----
>UniRef50_Q3ADB7(237-347:347) Flagellar motor switch protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ  E=3e-29 s/c=1.16 id=41% cov=82%
--------------------EMLEGAKATNIEKKVEKAEEQF----VLPTDEKLELILDIPLKVEVVLGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILSPKERLSKI--
>UniRef50_A6M1D2(295-397:398) CheC, inhibitor of MCP methylation n=24 Tax=Clostridium RepID=A6M1D2_CLOB8  E=2e-27 s/c=1.18 id=42% cov=76%
--------------------------------EVHAATFEPLMPQNSVPPIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVVVVDENFGIRITNIVSSVERIKRL--
>UniRef50_A8U602(243-360:360) Flagellar motor switch protein n=5 Tax=Lactobacillales RepID=A8U602_9LACT  E=3e-27 s/c=1.03 id=38% cov=87%
------------------PAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVINESFGIRITNILSKEQRIKHLN-
>UniRef50_A8F896(250-334:343) Flagellar motor switch protein FliN n=3 Tax=Thermotoga RepID=A8F896_THELT  E=4e-27 s/c=1.44 id=54% cov=59%
----------------------------------------------------KLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRI-----
>UniRef50_A6LMJ7(237-369:370) CheC, inhibitor of MCP methylation n=4 Tax=Thermotogaceae RepID=A6LMJ7_THEM4  E=1e-26 s/c=0.90 id=45% cov=80%
----------------------MSENIQKNPVSVSPVQFQSFESGGIvkstSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVSPQER------
>UniRef50_Q2RKB6(277-393:395) CheC, inhibitor of MCP methylation n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKB6_MOOTA  E=5e-24 s/c=0.96 id=41% cov=85%
-------------------ASAPSSRAQTPGGAGSPGGGQTQRQGQVYGAsSRNIDLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIVNENFGVRITHILEPYERINHL--
>UniRef50_A4A5Y8(2-116:117) Flagellar motor switch protein fliN n=3 Tax=unclassified Gammaproteobacteria RepID=A4A5Y8_9GAMM  E=6e-23 s/c=0.94 id=54% cov=61%
----------------------------------------------------DLDLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAGQFGLRLIDVVSPSERLKKL--
>UniRef50_Q7ULU7(1-138:141) Flagellar motor switch protein fliN n=1 Tax=Rhodopirellula baltica RepID=Q7ULU7_RHOBA  E=3e-22 s/c=0.77 id=42% cov=93%
MSETENQTESSEQLNTDDIEALLNEasqslAAATGDKESTERDVPrPFALGDLSPnslgeAAHDVDLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMNDNFCVRVTELV-----------
>UniRef50_B8HEJ4(104-238:238) Flagellar motor switch protein FliN n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ4_ARTCA  E=4e-22 s/c=0.78 id=48% cov=66%
--------------------------------------------TPLTGAHNDasvparLSLISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQDYAVRITRILDTAEGLR----
>UniRef50_A0LT68(5-120:123) Flagellar motor switch protein FliN n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LT68_ACIC1  E=7e-22 s/c=0.90 id=52% cov=58%
-----------------------------------------------------LELLQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVIDEEFGVRISEIVGPdSER------
>UniRef50_B9KJD9(15-98:98) Flagellar switch protein n=5 Tax=Rhodobacter sphaeroides RepID=B9KJD9_RHOSK  E=1e-21 s/c=1.23 id=54% cov=62%
---------------------------------------------------ENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMVGERFGIRFGQIIEPEKRAESL--
>UniRef50_A0LDK9(20-136:137) Flagellar motor switch protein FliN n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDK9_MAGSM  E=1e-19 s/c=0.83 id=42% cov=85%
----------DDDGMSDLARELRDEMDH------AENPFDVSTDGDL---PKNLELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVELEKEADDPLEIYVNDRLLAYGEVVMIKDKLGIRITDIVSLKERLENL--
>UniRef50_Q04RL4(74-174:174) Endoflagellar motor switch protein n=6 Tax=Leptospira RepID=Q04RL4_LEPBJ  E=2e-19 s/c=0.96 id=48% cov=59%
----------------------------------------------------NLNLLMDVNLALTVELGRTNMFIKDVNGLNEGIVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL-----
>UniRef50_Q4JMS2(1-110:110) Predicted flagellar motor switch protein n=3 Tax=Bacteria RepID=Q4JMS2_9BACT  E=2e-19 s/c=0.88 id=49% cov=62%
---------------------------------------------------ENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGDPLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARMESV--
>UniRef50_B6BN04(200-286:288) Flagellar motor switch FliN n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BN04_9PROT  E=4e-19 s/c=1.10 id=42% cov=64%
------------------------------------------------EEMNNISLIMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGEVVIVDGNFGVQITSIGSKRERLTQL--
>UniRef50_Q89AZ3(19-127:134) Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=FLIN_BUCBP  E=2e-18 s/c=0.85 id=46% cov=73%
------------------------EDKIFHSKTVNDVDLNLNSKNDIS---SKMKFIMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTENKYGIRIINII-----------
>UniRef50_B1I5E1(11-119:127) Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5E1_DESAP  E=7e-18 s/c=0.84 id=39% cov=67%
--------------------------------------FEQAGTPGMPGVRISLEYLDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVINDLFVLRIHSIAHPQ--------
>UniRef50_B1ZR34(6-81:84) Flagellar motor switch protein FliN n=3 Tax=Verrucomicrobia RepID=B1ZR34_OPITP  E=7e-17 s/c=1.16 id=42% cov=54%
-----------------------------------------------------LDIVLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVVVEDNFGIKITELV-----------
>UniRef50_A6F9R7(24-114:122) Flagellar motor switch protein n=1 Tax=Moritella sp. PE36 RepID=A6F9R7_9GAMM  E=7e-17 s/c=0.97 id=39% cov=61%
-------------------------------------------TAENKPLKKDLSFFHNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVVNGKYGVKLIDVV-----------
>UniRef50_A4Y0Q2(3-112:123) Flagellar motor switch protein FliN n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q2_PSEMY  E=7e-17 s/c=0.80 id=47% cov=59%
--------------------------------------------APASLPQQDLSFFGKIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNYGLRIVE-------------
>UniRef50_Q11LL6(5-114:121) Flagellar motor switch protein FliN n=3 Tax=Phyllobacteriaceae RepID=Q11LL6_MESSB  E=1e-16 s/c=0.80 id=46% cov=52%
-------------------------------------------------------FLVDIPVELQIVLGSAEMTVSELMALQRGSTVSLDRRIGEPVEIMVNGRLIARGEITILENdpsRFGVRLTEI------------
>UniRef50_C6XFK8(22-147:147) Putative flagellar motor switch protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFK8_LIBAP  E=8e-15 s/c=0.65 id=31% cov=91%
---IDNPLQDTNVSSPTNNSEMLIQKNDVDNISE---PISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDdthFGVRVIEILNAQ--------
>UniRef50_Q67MU5(149-217:227) Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67MU5_SYMTH  E=1e-14 s/c=1.17 id=41% cov=51%
-------------------------------------------------------VLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEVIAIGEKYGIRIVE-------------
>UniRef50_D2LD12(40-116:120) Surface presentation of antigens (SPOA) protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD12_RHOVA  E=1e-14 s/c=1.05 id=38% cov=54%
-----------------------------------------------------LERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGEIVVLDEegsRFGVTLTEMI-----------
>UniRef50_A3WGR5(8-81:102) Flagellar motor switch protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR5_9SPHN  E=9e-13 s/c=1.01 id=39% cov=54%
-----------------------------------------------------LKRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQDGRFALRIVELV-----------
>UniRef50_A3ZT50(224-298:309) Probable flagellar motor switch protein fliN n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZT50_9PLAN  E=2e-12 s/c=0.99 id=33% cov=55%
--------------------------------------------------------LLKIAIEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGDKFGMRVTNVLLPEER------
>UniRef50_A5KY22(47-124:127) Flagellar motor switch protein n=2 Tax=Vibrionales RepID=A5KY22_9GAMM  E=4e-12 s/c=0.93 id=44% cov=56%
----------------------------------------------------NISLLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNGQYGVRLLSIIKK---------
>UniRef50_B1TBB1(36-111:111) Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TBB1_9BURK  E=2e-11 s/c=0.92 id=39% cov=56%
-----------------------------------------------------LDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVAVDDRFGIRIVEIV--EER------
>UniRef50_A0NWB8(6-73:88) Putative uncharacterized protein n=3 Tax=Rhodobacteraceae RepID=A0NWB8_9RHOB  E=2e-11 s/c=1.02 id=35% cov=50%
----------------------------------------------------------EIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGERIGISITEVL-----------
>UniRef50_C7DF35(4-88:94) Flagellar motor switch protein FliN n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DF35_9RHOB  E=3e-11 s/c=0.82 id=39% cov=52%
----------------------------------------------------------DVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDtnisQLAVRLTEIIDP---------
>UniRef50_Q01PQ3(3-77:82) Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PQ3_SOLUE  E=3e-11 s/c=0.92 id=46% cov=49%
----------------------------------------------------------DVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIENTLGVRITD-------------
>UniRef50_A6Q2N5(6-82:83) Flagellar motor switch protein FliN/FliY n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2N5_NITSB  E=4e-11 s/c=0.89 id=41% cov=57%
------------------------------------------------GEQVDFSLLEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIVVINDKYGVRIVDL------------
>UniRef50_Q7UIS4(43-143:144) Probable flagellar motor switch protein fliN [Fragment] n=1 Tax=Rhodopirellula baltica RepID=Q7UIS4_RHOBA  E=1e-09 s/c=0.64 id=30% cov=55%
-------------------------------------------------------KVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDVHCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIGVPKE-------
>UniRef50_A7HWV0(9-77:78) Surface presentation of antigens (SPOA) protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HWV0_PARL1  E=9e-09 s/c=0.89 id=34% cov=51%
-------------------------------------------------------------VELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGERVAVSITTVLAGGE-------
>UniRef50_C5CYF0(61-141:151) Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CYF0_VARPS  E=9e-09 s/c=0.76 id=33% cov=46%
---------------------------------------------------------------LQVCVGAVSLSVGELLGAKEHQVLRLDREIDHPVDLTIEGKVVARGQLVAVDGHFAVRITEL------------
>UniRef50_A0RC99(11-99:119) Flagellar motor switch protein N n=71 Tax=Bacillus cereus group RepID=A0RC99_BACAH  E=6e-08 s/c=0.66 id=29% cov=53%
-----------------------------------------------------IDTVSDISIELGVKLGKASITLGDVKELKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI------------
>UniRef50_Q02KI5(211-308:309) Translocation protein in type III secretion n=5 Tax=Pseudomonas aeruginosa RepID=Q02KI5_PSEAB  E=8e-08 s/c=0.59 id=30% cov=53%
---------------------------------------------------EDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQDRLGVRVT--------------
>UniRef50_Q11M61(240-344:354) Surface presentation of antigens (SPOA) protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M61_MESSB  E=2e-07 s/c=0.54 id=27% cov=77%
-------------------AAEIFESAESIIMNEIDSDWSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVTILANGAPAGRGYLVQIGDHMGVQLS--------------
>UniRef50_B0K1R9(260-328:332) Flagellar motor switch protein FliM n=14 Tax=Clostridia RepID=B0K1R9_THEPX  E=3e-07 s/c=0.81 id=38% cov=50%
-----------------------------------------------------------IPL--TAQLGSTTITVKEFLDFEIGDIIMLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYK---------
>UniRef50_A8LMS4(12-88:89) Flagellar motor switch protein FliN n=5 Tax=Rhodobacteraceae RepID=A8LMS4_DINSH  E=3e-07 s/c=0.73 id=36% cov=53%
-----------------------------------------------------------VPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARGVLEEDADshRLSVRLTEVISP-ERV-----
>UniRef50_P55719(278-350:358) Probable translocation protein y4yK n=5 Tax=Rhizobiales RepID=Y4YK_RHISN  E=3e-07 s/c=0.77 id=34% cov=50%
----------------------------------------------------DLD---DIEIVLVFECGRWPISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDDLGIRL---------------
>UniRef50_P74860(250-313:322) Secretion system apparatus protein ssaQ n=37 Tax=Salmonella enterica RepID=SSAQ_SALTY  E=3e-06 s/c=0.82 id=32% cov=47%
-----------------------------------------------------------IPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRIT--------------
>UniRef50_Q3SRV0(24-83:97) Surface presentation of antigens (SPOA) protein n=13 Tax=Bradyrhizobiaceae RepID=Q3SRV0_NITWN  E=1e-05 s/c=0.85 id=39% cov=43%
-------------------------------------------------------------VDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASG-VVMVNRN---RIT--------------
>UniRef50_A0AGF3(6-72:78) Complete genome n=15 Tax=Listeria RepID=A0AGF3_LISW6   E=2e-05 s/c=0.75 id=34% cov=47%
-----------------------------------------------------------IPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGKMFVKIT--------------
>UniRef50_D1UMJ4(346-443:454) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UMJ4_9BURK  E=4e-05 s/c=0.50 id=33% cov=47%
---------------------------------------------------------LDLPVQFEVD--TVALPLSQLYALRPGYVLELPTPVAEAqLKLVTHGQTIGYGELVTVGDHLGIRI---------------
>UniRef50_B4EYD4(232-309:309) Type III secretion system protein n=2 Tax=Proteus mirabilis RepID=B4EYD4_PROMH  E=5e-05 s/c=0.63 id=32% cov=52%
----------------------------------------------------DLNSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKIKDMLAVEI---------------
>UniRef50_A0P0L3(281-356:360) Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P0L3_9RHOB  E=7e-05 s/c=0.64 id=30% cov=48%
------------------------------------------------------------PLKIglSFRLGSANLSATEIANWRPGAIANLPDSLNESnteVKVVANDTTIAQGDLVRVGDRVGVRLSRI------------
>UniRef50_B9L5A2(222-287:334) Flagellar motor switch protein FliM n=2 Tax=Thermomicrobia (class) RepID=B9L5A2_THERP  E=7e-05 s/c=0.73 id=44% cov=30%
-------------------------------------------------------------LQLRVELGRARLTVRELLALEPGDVLVLDQDVSFPLAVYV------------------------------------
>UniRef50_Q2RZE2(259-308:372) Flagellar motor switch protein FliM n=2 Tax=Rhodothermaceae RepID=Q2RZE2_SALRD  E=8e-05 s/c=0.96 id=39% cov=32%
-------------------------------------------------------------VNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPIKVFVNGE---------------------------------
>UniRef50_Q3JLG5(331-425:435) SctQ n=18 Tax=pseudomallei group RepID=Q3JLG5_BURP1   E=9e-05 s/c=0.51 id=27% cov=46%
-------------------------------------------------------------LPVQFEIDTVSLPIDQLSALEPGYVIELpVAVTDARLRLVVHGQTVGYGELVAVGEHLGVRII--------------
>UniRef50_Q56022(218-299:303) Surface presentation of antigens protein spaO n=52 Tax=Salmonella enterica RepID=SPAO_SALTI  E=0.0001 s/c=0.58 id=32% cov=52%
-----------------------------------------------------------LPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSES--------
>UniRef50_B1Z5P0(301-367:374) Type III secretion system apparatus protein YscQ/HrcQ n=4 Tax=Burkholderia cepacia complex RepID=B1Z5P0_BURA4  E=0.0004 s/c=0.69 id=34% cov=47%
---------------------------------------------------------LDLPLKL--EIDTVSMPVAQLSALRAGYVLELpTALPDARVRLVTYGQTIGFGELVSVGDHLGVRL---------------
>UniRef50_Q2SC33(241-304:318) Putative type III secretion protein YscQ n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SC33_HAHCH  E=0.0004 s/c=0.72 id=29% cov=45%
-------------------------------------------------------------LKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAPVAMKVNGQTLARCELVEIDGRLGARV---------------
>UniRef50_Q47I10(9-147:147) Type III secretion system outer membrane O protein n=57 Tax=Proteobacteria RepID=Q47I10_DECAR  E=3e-33 s/c=1.02 id=56% cov=96%
------PVEDDGQISEDDWAAAMSEQAISDAPAAMAAQpadiFPSFGGnAGNAGMMNELDMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVVNDKFGIRLTDIITPSERMRKLNR
>UniRef50_A4IMA6(280-393:393) Flagellar motor switch protein n=8 Tax=Firmicutes RepID=A4IMA6_GEOTN  E=3e-32 s/c=1.22 id=42% cov=82%
-----------------------KEEESVAERHIQAADFAEFDDPPLAAtEARNLELLFDVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVRITDIVSQNDRLKRL--
>UniRef50_B0THB7(278-374:375) Flagellar motor switch protein flin, putative n=5 Tax=Bacteria RepID=B0THB7_HELMI  E=4e-32 s/c=1.42 id=58% cov=61%
----------------------------------------------------NLGLIMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITDIVSPIERIGNL--
>UniRef50_Q31FQ0(15-153:153) Flagellar motor switch protein FliN n=5 Tax=Gammaproteobacteria RepID=Q31FQ0_THICR  E=2e-31 s/c=0.98 id=50% cov=95%
------EAEGSDAAGDDPWGAALSEQaAETSSNNSDEIDAASFdaleKGRGDSSEKVDLDVLLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVINDKFGVRLTDVVSPQERIKKL--
>UniRef50_C6BUR6(98-229:229) Flagellar motor switch protein FliN n=21 Tax=Proteobacteria RepID=C6BUR6_DESAD  E=3e-30 s/c=1.00 id=46% cov=87%
------------------WAAALAEDTGDDIRKEKEQEFlrtqtrdadfkdltNEAKNPRHDGSRRDLDFILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINEKFGIRLTDIISPIERVKHLA-
>UniRef50_C5VT98(260-392:394) Flagellar motor switch phosphatase FliY n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VT98_CLOBO  E=4e-30 s/c=0.99 id=42% cov=80%
--------------------------KSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIVNIVSGEERVKSL--
>UniRef50_B5Y7F0(158-284:287) Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F0_COPPD  E=1e-29 s/c=1.02 id=43% cov=93%
-SDVSERADAVSSEVEKTSASVMQE------NDVEDVTFPQLRPeGDIQPLPRNLELLLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDESFGVRILDIIAPKERLK----
>UniRef50_C0R179(231-360:360) Flagellar motor switch protein n=2 Tax=Brachyspira RepID=C0R179_BRAHW  E=3e-29 s/c=0.99 id=45% cov=73%
---------------------------------VQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIINPMDRL-----
>UniRef50_A3DCN7(297-406:406) CheC, inhibitor of MCP methylation n=2 Tax=Clostridium thermocellum RepID=A3DCN7_CLOTH  E=3e-29 s/c=1.17 id=50% cov=74%
-------------------------------INVQPAQFEAFDDGsKISIDKKNIGLIMDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPSKRL-----
>UniRef50_B5YIZ3(20-138:139) Flagellar motor switch protein FliN n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ3_THEYD  E=2e-28 s/c=1.06 id=46% cov=88%
----------------DMAKALEMEKAMKAKEEVQSPHIDEFTVTEEKPKTRDIDFILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNEKFGIRITDIISPQERVKQL--
>UniRef50_C1I888(263-370:370) Flagellar switch protein FliY n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I888_9CLOT  E=8e-28 s/c=1.15 id=52% cov=62%
---------------------------------------------------RNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEVLINGKKIAYGEVVVVDENFGVRITSIVSGADRIRTL--
>UniRef50_C4G689(264-369:370) Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G689_ABIDE  E=2e-26 s/c=1.12 id=52% cov=56%
--------------------------------------------------QENIGLIMDVPLEVTVELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV-----------
>UniRef50_C0GJF1(1-140:141) Flagellar motor switch protein FliN n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF1_9FIRM  E=7e-26 s/c=0.84 id=34% cov=98%
MSDSLLSQAEIDALLTQVPSETEETPVVEDlSFQAKEMPQPKKNKPRAANAGMqshpNLERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVVGEHFGVRISQIITPQQRIE----
>UniRef50_Q01PP4(162-282:282) Flagellar motor switch protein FliN n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP4_SOLUE  E=3e-23 s/c=0.90 id=34% cov=79%
----------------------------SPAAGQPEAAPEDAGGEPHTVKRNDmpptMELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVVVVEGNYGVRIQQIVNRQDRLRSI--
>UniRef50_C1F999(135-245:248) Putative flagellar motor switch protein FliN n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F999_ACIC5  E=5e-22 s/c=0.95 id=31% cov=61%
----------------------------------------------------NVDLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLVNGNFGLRVTEVAEPKKCLESV--
>UniRef50_D2S982(116-239:249) Flagellar motor switch protein FliN n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S982_9ACTO  E=1e-21 s/c=0.83 id=53% cov=55%
-----------------------------------------------------LDLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVVDEDFGLRISEIVT----------
>UniRef50_A1QZ73(29-109:114) Flagellar motor switch protein FliN n=7 Tax=Spirochaetaceae RepID=A1QZ73_BORT9  E=1e-21 s/c=1.27 id=56% cov=53%
-------------------------------------------------------LLMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITEII-----------
>UniRef50_C1A552(21-129:141) Flagellar motor switch protein FliN n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A552_GEMAT  E=2e-21 s/c=0.94 id=39% cov=77%
----------------------LKEETVAAAPQARAPQLTDFEQTMLGTTEVPIGMLLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGEHFGVRITRVL-----------
>UniRef50_C6WJP8(168-244:250) Flagellar motor switch protein FliN n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP8_ACTMD  E=2e-21 s/c=1.34 id=54% cov=50%
-------------------------------------------------------------MEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVIDENFGIRVTEIIKP---------
>UniRef50_Q1GNY9(21-109:111) Flagellar motor switch FliN n=2 Tax=Sphingomonadaceae RepID=Q1GNY9_SPHAL  E=4e-21 s/c=1.15 id=40% cov=63%
----------------------------------------------------NFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAKGEIVSVDGRYGIQVAEVVAPARGLEGFER
>UniRef50_D0I457(20-115:116) Flagellar motor switch protein FliN n=2 Tax=Vibrionaceae RepID=D0I457_VIBHO  E=4e-20 s/c=1.03 id=40% cov=63%
---------------------------------------------------NDMRFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHAEVVVVNNKYGLRLVNVVDEKDMLRGLA-
>UniRef50_A4THZ3(1-127:137) Flagellar switch protein n=26 Tax=Enterobacteriaceae RepID=A4THZ3_YERPP  E=1e-19 s/c=0.77 id=40% cov=64%
--------------------------------------TPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIINI------------
>UniRef50_Q18D12(39-123:124) Putative flagellar motor switch protein n=3 Tax=Clostridium difficile RepID=Q18D12_CLOD6  E=2e-18 s/c=1.10 id=38% cov=63%
--------------------------------------------------RNNIQRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVVDLNFGVKITSIVSEEDMVKSL--
>UniRef50_C5JB71(1-117:117) Flagellar motor switch/type III secretory pathway protein n=1 Tax=uncultured bacterium RepID=C5JB71_9BACT  E=2e-18 s/c=0.80 id=33% cov=79%
-------------------GAELDMAAAMAGQAKAEAKKSAASPKKAARSDGRMEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVVVEDRLAIQITDII-----------
>UniRef50_A1RF65(11-117:128) Flagellar motor switch protein FliN n=8 Tax=Shewanella RepID=A1RF65_SHESW  E=7e-18 s/c=0.85 id=51% cov=49%
-----------------------------------------------------------LPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI------------
>UniRef50_A7K1M2(12-113:123) Flagellar motor switch protein FliN n=17 Tax=Vibrionaceae RepID=A7K1M2_VIBSE  E=9e-18 s/c=0.89 id=40% cov=55%
---------------------------------------------------RDLSFFKSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLRLIDV------------
>UniRef50_Q3ADD4(15-109:124) Flagellar motor switch protein FliN n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADD4_CARHZ  E=1e-17 s/c=0.96 id=42% cov=47%
-----------------------------------------------------------IKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINEMYGVRIT--------------
>UniRef50_D1AZW0(15-100:103) Surface presentation of antigens (SPOA) protein n=3 Tax=Campylobacteraceae RepID=D1AZW0_SULD5  E=2e-17 s/c=1.05 id=39% cov=52%
--------------------------------------------------------LLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVYEKNLAIRINEIL-----------
>UniRef50_A7H064(14-102:105) Flagellar motor switch protein FliN n=8 Tax=Epsilonproteobacteria RepID=A7H064_CAMC5  E=2e-17 s/c=1.01 id=40% cov=53%
------------------------------------------------------DELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVYEKNLAIRINEIL-----------
>UniRef50_O67495(1-111:112) Flagellar motor switch protein fliN n=1 Tax=Aquifex aeolicus RepID=FLIN_AQUAE  E=6e-17 s/c=0.80 id=31% cov=81%
-------------------EEQTKEIQEEKKETPQEEVREEKKEEKKVSVIELIQHFSDIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIIDGKIGVKIKEVVKEQ--------
>UniRef50_B9Z4S4(40-109:119) Flagellar motor switch protein FliN n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z4S4_9NEIS  E=8e-17 s/c=1.26 id=46% cov=52%
-------------------------------------------------------FLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAGDNYGLRVVEL------------
>UniRef50_Q1CTU2(37-121:123) Flagellar switch protein n=20 Tax=Helicobacteraceae RepID=Q1CTU2_HELPH  E=9e-17 s/c=1.04 id=33% cov=55%
----------------------------------------------------DYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEIL-----------
>UniRef50_A4U4R5(14-88:90) Surface presentation of antigens (SPOA) protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4R5_9PROT  E=3e-16 s/c=1.15 id=39% cov=45%
------------------------------------------------------------------VLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVVVEDHLAVTVTEVL-----------
>UniRef50_P42713(209-304:307) Yop proteins translocation protein Q n=21 Tax=Yersinia RepID=YSCQ_YERPE  E=3e-15 s/c=0.86 id=31% cov=49%
-----------------------------------------------------------LPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIerlTEV------------
>UniRef50_A9DR59(40-148:154) Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DR59_9RHOB  E=4e-15 s/c=0.75 id=34% cov=69%
-------------------------QLDTEDSRNALAPRPEAGGAG-------INAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKVGeDRLGVSLTQIV-----------
>UniRef50_B1FB78(195-309:309) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FB78_9BURK  E=6e-15 s/c=0.71 id=31% cov=51%
-----------------------------------------------------------LPVKLEFAFRQRELTVADVARLHPGAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLAVEIqsIELVDP---------
>UniRef50_A3NFV2(37-107:115) Flagellar motor switch/type III secretory pathway protein n=9 Tax=Betaproteobacteria RepID=A3NFV2_BURP6  E=1e-14 s/c=1.14 id=43% cov=49%
-----------------------------------------------------------IPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENYGLKIIDL------------
>UniRef50_Q48IQ1(211-295:301) Type III secretion component, putative n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48IQ1_PSE14  E=1e-14 s/c=0.95 id=34% cov=52%
----------------------------------------------------DLDTSLDeLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL---------------
>UniRef50_Q2SH51(283-371:397) Flagellar motor switch/type III secretory pathway protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH51_HAHCH  E=3e-14 s/c=0.89 id=33% cov=48%
----------------------------------------------------------DLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGDQIGARIT--------------
>UniRef50_UPI0001C312B8(199-283:301) CheC, inhibitor of MCP methylation n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B8  E=7e-14 s/c=0.92 id=35% cov=53%
------------------------------------------------------DALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVNGLRFASGTLVLTDDgEWALRLAEV------------
>UniRef50_B1K4V5(263-357:364) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K4V5_BURCC  E=2e-13 s/c=0.81 id=29% cov=47%
-------------------------------------------------------------LPVSFEIETVTLPLAQLSALRPGYVIELrGTLRDARIRLLAYGQLIGIGELVTVGEQLGVRVIDV------------
>UniRef50_Q94KV5(251-353:355) FDR3 n=1 Tax=Zea mays RepID=Q94KV5_MAIZE   E=5e-13 s/c=0.73 id=27% cov=54%
----------------------------------------------------------DVELPVHIEVVTVNLPIGQIAALQPGYILALPvALADADIRLVAHGQTLAFGELVAIGDQLGLHIRRIANADER------
>UniRef50_B1T0N2(287-374:377) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T0N2_9BURK  E=8e-13 s/c=0.85 id=30% cov=42%
------------------------------------------------------------------EIDTVALPIDQLAAMRQGYVIELSRTTSDmQVRLTAHSQVIGHGELVSVGDHLGVRI---------------
>UniRef50_D1B6B3(235-331:335) Flagellar motor switch protein FliM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B3_THEAS  E=4e-12 s/c=0.74 id=24% cov=51%
-------------------------------------------------------------VPVALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEE-------
>UniRef50_B3Q297(230-337:339) Type III secretion system translocation protein n=6 Tax=Rhizobium/Agrobacterium group RepID=B3Q297_RHIE6  E=5e-12 s/c=0.67 id=32% cov=47%
-----------------------------------------------------------IPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDGLSAVRVT--------------
>UniRef50_B2V6Q2(12-86:87) Surface presentation of antigens (SPOA) protein n=2 Tax=Sulfurihydrogenibium RepID=B2V6Q2_SULSY  E=5e-12 s/c=0.96 id=30% cov=55%
---------------------------------------------------KKISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVNIYFLNEKVGFGELVNVNEKYGVRLVDLI-----------
>UniRef50_C6DIY0(250-356:386) Type III secretion system apparatus protein YscQ/HrcQ n=6 Tax=Pectobacterium RepID=C6DIY0_PECCP  E=2e-10 s/c=0.62 id=31% cov=47%
-----------------------------------------------------------LPVTLHLRCGSLTMTLTELQHLASGSVLTLRDVVPGQAWLYYGDIALASGDLVDVEGRLGLQIT--------------
>UniRef50_B3IXD9(232-350:354) HrcQ n=2 Tax=Pseudomonas cichorii RepID=B3IXD9_PSECI   E=3e-10 s/c=0.56 id=23% cov=64%
------------------------------------MQEHEDFAENTADGSDDMERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGHAMLFHGERALAHGELVDVEGRLGLQIT--------------
>UniRef50_A6M1D3(234-326:332) Flagellar motor switch protein FliM n=26 Tax=Clostridium RepID=A6M1D3_CLOB8  E=3e-10 s/c=0.71 id=29% cov=50%
-------------------------------------------------------------VEIVAELGTANITVDDFLKLTVGDVIKLDNKSSSPIKVYVGNEECYYAKPGVVGKNAGVMILDITDKE--------
>UniRef50_B8I3P2(259-327:328) Flagellar motor switch protein FliM n=2 Tax=Clostridium RepID=B8I3P2_CLOCE  E=4e-10 s/c=0.96 id=30% cov=51%
-------------------------------------------------------------VPVRAVLGRTSISISEFLDLQGGDVLPLDTNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREE-------
>UniRef50_A5D0K2(258-328:330) Flagellar motor switch protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0K2_PELTS  E=4e-10 s/c=0.92 id=31% cov=52%
-------------------------------------------------------------IELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDLDLYIGEHLKFKVQAGALGSKLAVQITALATEGEK------
>UniRef50_C4PNI3(287-373:373) Type III secretion component, basal body n=13 Tax=Chlamydiaceae RepID=C4PNI3_CHLTZ  E=1e-09 s/c=0.74 id=30% cov=47%
--------------------------------------------------------------KIVAEVARYSLSVGEFLKLGPGSVLQFDGvHPTLGVDIILNGAKVGRGNIIALQDVLGIRVLEV------------
>UniRef50_A1B5E4(13-78:85) Surface presentation of antigens (SPOA) protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5E4_PARDP  E=1e-09 s/c=0.97 id=34% cov=47%
-----------------------------------------------------------IQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVsgdETDNRLCVRI---------------
>UniRef50_A7FNE1(242-310:320) Type III secretion apparatus protein, YscQ/HrcQ family n=22 Tax=Yersinia RepID=A7FNE1_YERP3  E=7e-09 s/c=0.90 id=26% cov=48%
----------------------------------------------------------DLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRIA--------------
>UniRef50_Q12T67(14-103:103) Surface presentation of antigens (SPOA) protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T67_SHEDO  E=1e-08 s/c=0.68 id=26% cov=51%
-------------------------------------------------------------IELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAKGRLVAVDEYLALEITQVTSNEQ-------
>UniRef50_C4Z5H1(258-325:327) Flagellar motor switch protein FliM n=7 Tax=Bacteria RepID=C4Z5H1_EUBE2  E=1e-08 s/c=0.90 id=19% cov=49%
---------------------------------------------------------------VKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVTEVIRKE--------
>UniRef50_Q7NUU1(201-286:290) Translocation protein in type III secretion n=1 Tax=Chromobacterium violaceum RepID=Q7NUU1_CHRVO  E=1e-07 s/c=0.67 id=20% cov=47%
----------------------------------------------------------DAMITVTVEVAKMELPLHQLGNLQPGTLLSSAVSSDGLVTLKAGSRPIARGTLLDIDSRLAVRI---------------
>UniRef50_UPI00016A8DC2(291-361:361) translocation protein in type III secretion n=2 Tax=Burkholderia oklahomensis RepID=UPI00016A8DC2  E=1e-06 s/c=0.77 id=20% cov=48%
---------------------------------------------------------LDAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGFVTLQVAGKPFARGTLLDVGGRLAVRI---------------
>UniRef50_A1B2Z2(214-331:392) Surface presentation of antigens (SPOA) protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B2Z2_PARDP  E=2e-06 s/c=0.45 id=26% cov=48%
------------------------------------------------------------PIRLAGILCRRRLSLHQLRGLATGSLLPLPQNVLDEARLETpQGQLLARGRLGEKDGFHAIRLRDI------------
>UniRef50_Q01VK1(186-267:293) Flagellar motor switch protein FliM n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VK1_SOLUE  E=1e-05 s/c=0.62 id=25% cov=37%
------------------------------------------------------------------------LSVGDLLSLREGNLLTFDFPVERPIELVVNGACKFTGQVVSTGRKRACQI---------------
>UniRef50_A9BEY4(264-322:359) Flagellar motor switch protein FliM n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BEY4_PETMO  E=2e-05 s/c=0.85 id=36% cov=24%
-------------------------------------------------------------------LGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDL--------------------------------------
>UniRef50_B1TBB0(194-270:272) Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TBB0_9BURK  E=6e-05 s/c=0.63 id=13% cov=50%
---------------------------------------------------------------VCARLGVVELPVAQLLDLMPGDVLVIAEQLDPVVSLVTGNTgqvPVGFGRLGRTDRQLSIQLQSLVEPKD-------
>UniRef50_C6NYG8(276-349:366) Flagellar motor switch protein FliM n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG8_9GAMM  E=0.0002 s/c=0.64 id=24% cov=50%
-------------------------------------------------------------VDVSVILASQDIPLSRARTLQKGDVLSFDRVQDARV--YVEDILIGEGRYGAFKNQYAVKLVSYRTPSE-------
>UniRef50_A9FKL0(187-295:460) Surface presentation of antigens (SPOA) protein n=8 Tax=Rhodobacterales RepID=A9FKL0_9RHOB  E=0.0005 s/c=0.42 id=30% cov=46%
--------------------------------------------------------------ELRAVLCRMKVPANEFSALEEGDLLPLDQAFLYETEmISISGQAIAQGRLGQMNGARAVRLTD-------------
>UniRef50_Q51466(29-157:157) Flagellar motor switch protein fliN n=23 Tax=Proteobacteria RepID=FLIN_PSEAE  E=8e-25 s/c=0.88 id=45% cov=90%
-------------SQDDIDALMAQGGATPVAEPSTPrAPMEEFGASPKAPTISglegpNLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL--
>UniRef50_D1C1A4(30-143:144) Flagellar motor switch protein FliN n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1A4_SPHTD  E=3e-24 s/c=0.98 id=44% cov=82%
--------------------AAPGEQAGGEAASVHPAAFMALSQETQSGGPQSIEFLRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDEKFAVRVVEIVPPERRL-----
>UniRef50_B9L5A1(6-122:128) Flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5A1_THERP  E=4e-23 s/c=0.92 id=46% cov=76%
-----------------------------PETPIQEARFVDLRDQPIGNGRQGIDFLRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDEKFAVRITEIVSPEKRL-----
>UniRef50_A1SEN5(117-243:246) Flagellar motor switch protein FliN n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN5_NOCSJ  E=9e-21 s/c=0.80 id=38% cov=83%
----------------DVVAALLVPEALLAHPADDTPALPTTSAAAPTGDRRGIEMLHGVDMEVTVEIGRARMTVRELLDLAPGAVLELDRAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIVTDS--------
>UniRef50_Q2RZE3(121-247:250) Possible flagellar motor switch FliN n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE3_SALRD  E=1e-20 s/c=0.80 id=31% cov=92%
--------QSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSgtFKLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQFGVRITNLASEGHREK----
>UniRef50_Q2RKD7(6-124:124) Flagellar motor switch FliN n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKD7_MOOTA  E=2e-20 s/c=0.84 id=41% cov=79%
-----------------------AMEAGEDQPRVEKARFAPLQPAPAPGVTADFKRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVINDAFGVRINSLAAVEE-------
>UniRef50_D1B0L6(163-286:286) Flagellar motor switch protein FliN n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B0L6_SULD5  E=4e-20 s/c=0.80 id=32% cov=87%
-----------------LVEDMPRMDTPKESIPESALIEPKKVVPSMSPeEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLEILVGDKVIAMGEVVIVDGNFGVQIGEIGTKRERLEKL--
>UniRef50_C1ZEF0(58-192:193) Flagellar motor switch protein FliN n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEF0_PLALI  E=2e-19 s/c=0.72 id=38% cov=91%
----NTSAEQSLRQAEQQLAAALSEElpprnmrGLPPGEAPARFEFEEFGTPfptRAAAPVFPLDALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVLNDNFCVRIAEILT----------
>UniRef50_B9L5V0(168-270:270) Flagellar protein FliY n=1 Tax=Nautilia profundicola AmH RepID=B9L5V0_NAUPA  E=3e-19 s/c=0.93 id=37% cov=68%
---------------------------------------------ELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEPLDILIEDKKIGEGEVVIVDGNFGIQITSIGSREERLNSLKK
>UniRef50_C3XES1(196-282:283) Flagellar motor switch protein FliY n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XES1_9HELI  E=3e-19 s/c=1.11 id=39% cov=64%
-------------------------------------------------EMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLASDPLEILVNDKIIGKGEVVVVDGNFAIQITEIGTKKERLESL--
>UniRef50_A5V6A7(5-105:107) Flagellar motor switch protein FliN n=4 Tax=Sphingomonadaceae RepID=A5V6A7_SPHWW  E=4e-18 s/c=0.91 id=45% cov=63%
----------------------------------------------------NLRLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEVVTVNGKFGIRVVDIVAADARLPGIER
>UniRef50_C8W1G7(16-115:128) Surface presentation of antigens (SPOA) protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1G7_DESAS  E=2e-17 s/c=0.90 id=43% cov=55%
-----------------------------------------------------IKHIEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVINDNYGIRITSVFKP---------
>UniRef50_A1T0L0(27-118:120) Surface presentation of antigens (SPOA) protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0L0_PSYIN  E=3e-16 s/c=0.94 id=47% cov=55%
-----------------------------------------------------LSFLNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANGHYGVKITDIVNK---------
>UniRef50_C1ZEH8(262-393:396) Flagellar motor switch/type III secretory pathway protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEH8_PLALI  E=6e-15 s/c=0.62 id=28% cov=88%
---------------DDLLSNYEGLAAQDPMESAAPLAQETMPQQSVTSQLM-LQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPEKPSSL--
>UniRef50_UPI00016C4201(1-110:117) hypothetical protein GobsU_09164 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4201  E=3e-14 s/c=0.72 id=30% cov=80%
-------------------AETTPTDPADPGVVARQAEFPRLEPRAGTGPGSTLESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVVGEHFAVRIKNLLPP---------
>UniRef50_Q2CGH8(1-125:132) Flagellar motor switch protein FliN n=3 Tax=Rhodobacteraceae RepID=Q2CGH8_9RHOB  E=9e-14 s/c=0.62 id=37% cov=55%
---------------------------------------------------RSIEAMLNVGLEVNIVLGRSRMPISQLLKLSRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDnRVGVTLTEIV-----------
>UniRef50_UPI0001744A0D(226-339:342) type III secretion system protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744A0D  E=1e-13 s/c=0.68 id=27% cov=60%
--------------------------------------------APTPAATEPLALVDQLEVELTFLVGTHAATLEQLRSLAPGACIELPTPASQAVTICANGRAIGKGELLDIGNRIGVRITEL------------
>UniRef50_C3KNB2(270-347:351) Type III secretion system translocation protein, RhcQ n=1 Tax=Rhizobium sp. NGR234 RepID=C3KNB2_RHISN  E=2e-12 s/c=0.94 id=30% cov=52%
----------------------------------------------------ELEPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPSLSSPVSILANGRLVGKGELIRIGEGLGIRV---------------
>UniRef50_A2S1P2(216-321:335) Type III secretion system protein BsaV n=40 Tax=pseudomallei group RepID=A2S1P2_BURM9  E=6e-12 s/c=0.68 id=23% cov=72%
--------------------DASHDASHDTSHDTSHDTSHDEPTAAHAPPAFDIDAL---PVTLEFVLHDERVTVEQLAGCHLGMVLPL-RGAPGEVTIRANGRPFGRGELIQVGEQLAVEV---------------
>UniRef50_Q1IR63(186-251:252) Flagellar motor switch FliN n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR63_ACIBL  E=1e-11 s/c=1.08 id=39% cov=45%
----------------------------------------------------------------TLRFGQREMLLQDILELQSGSVVELDREIQDPVELLLDGRVIARGSVVVVDGNYGLRVAEV------------
>UniRef50_Q2LT03(251-328:333) Flagellar motor switch protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT03_SYNAS  E=1e-11 s/c=0.91 id=28% cov=53%
-------------------------------------------------------------LDILIELGSTLISAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISEIVQDKEVM-----
>UniRef50_A8EW59(9-87:95) Flagellar motor switch protein FliN n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW59_ARCB4  E=4e-11 s/c=0.88 id=34% cov=52%
------------------------------------------------------DLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTGDIIVIDEKLAVRVQD-------------
>UniRef50_C8WWF8(237-320:331) Flagellar motor switch protein FliM n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWF8_ALIAD  E=8e-11 s/c=0.81 id=26% cov=50%
-------------------------------------------------------KLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRVYAVKI---------------
>UniRef50_C1DW32(3-82:83) Flagellar motor switch protein FliN/FliY n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DW32_SULAA  E=8e-11 s/c=0.85 id=29% cov=56%
--------------------------------------------------IEDLKLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIGEMTNINEKYGIRIVDLI-----------
>UniRef50_Q2SEZ2(27-108:111) Flagellar motor switch protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEZ2_HAHCH  E=9e-11 s/c=0.83 id=36% cov=53%
-----------------------------------------------------LDLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMNKQLNDPIELLLDGKVVARGKLVAVDDVFGIQITE-------------
>UniRef50_C6HWH3(255-328:341) Flagellar motor switch protein FliM n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWH3_9BACT  E=2e-10 s/c=0.90 id=27% cov=51%
-----------------------------------------------------------VPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKALRFKARPGVYRSSRAVRIEERVFP---------
>UniRef50_C5ALK3(345-437:445) Type III secretion system apparatus protein YscQ/HrcQ n=4 Tax=Burkholderia RepID=C5ALK3_BURGB  E=3e-10 s/c=0.72 id=29% cov=46%
-------------------------------------------------------------LPVQFEIDTVALPLDQLSSLGPGYVVELPVPaADAQLRLVVHGQTVGFGELVTVGEHLGVRII--------------
>UniRef50_Q3ADB8(240-332:335) Flagellar motor switch protein FliM n=6 Tax=Clostridia RepID=Q3ADB8_CARHZ  E=3e-10 s/c=0.72 id=23% cov=51%
-------------------------------------------------------------LEVSAILGGTELRVREFLKIEVGDIVVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE-------
>UniRef50_B1FTG8(372-438:446) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTG8_9BURK  E=3e-10 s/c=0.99 id=33% cov=47%
---------------------------------------------------------LDLPVQ--FEVDTVALPLSQLYALRPGYVLELPTPvADAQLKLVTHGQTIGYGELVTVGDHLGIRI---------------
>UniRef50_B2VEE9(227-294:309) Type III secretion apparatus n=3 Tax=Erwinia RepID=B2VEE9_ERWT9   E=7e-10 s/c=0.96 id=27% cov=40%
----------------------------------------------------------DLSVEIEFVLDSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELV-------------------------
>UniRef50_Q6MI46(260-333:333) Flagellar motor switch protein FliM n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI46_BDEBA  E=9e-10 s/c=0.87 id=29% cov=36%
--------------------------------------------------------LLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVAVEGV---------------------------------
>UniRef50_Q93PZ3(27-130:133) RscQB n=1 Tax=Pseudomonas fluorescens RepID=Q93PZ3_PSEFL   E=9e-09 s/c=0.59 id=27% cov=47%
---------------------------------------------------------------LNVRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRVM-----------
>UniRef50_UPI00016C4202(198-280:283) hypothetical protein GobsU_09169 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4202  E=1e-08 s/c=0.74 id=35% cov=44%
-------------------------------------------------------------VEMSVILGRADLTMRDVSDLTTGDVIVFDQKVTEPLDGLVSGARKFRVWPGVVGDRAAV-----------------
>UniRef50_Q141Y3(233-320:323) Putative type III secretion protein, FliN like n=1 Tax=Burkholderia xenovorans LB400 RepID=Q141Y3_BURXL  E=1e-08 s/c=0.69 id=34% cov=42%
------------------------------------------------------------------VLGTLSLSVAELAHLREGSIVAFRLPARERkVTLLCQGIPFARGELIDIEGALGVRVT--------------
>UniRef50_C0GJF2(251-315:325) Flagellar motor switch protein FliM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF2_9FIRM  E=3e-08 s/c=0.92 id=28% cov=34%
----------------------------------------------------------DVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEK---------------------------------
>UniRef50_D2UDN4(230-345:346) Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDN4_XANAL  E=5e-08 s/c=0.51 id=30% cov=52%
----------------------------------------------------------ELPVELSFAFEPLALKLAELSALRPGDVVPLESGV--RLLIHANGRPVGEAELVEVEGVLAAEVTAIHLKSE-------
>UniRef50_Q9F0H3(35-133:137) Type III secretion protein hrcQb n=10 Tax=Pseudomonas syringae group RepID=HRCQB_PSESM  E=5e-08 s/c=0.59 id=32% cov=46%
-------------------------------------------------------------LDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDGRLGLQIT--------------
>UniRef50_C4K6D6(125-228:229) Type III surface presentation of antigens protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6D6_HAMD5  E=1e-07 s/c=0.56 id=28% cov=49%
-----------------------------------------------------------VPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKlLGMENGALGVELTQL------------
>UniRef50_Q5FT23(266-333:343) Flagellar motor switch protein FliM n=1 Tax=Gluconobacter oxydans RepID=Q5FT23_GLUOX  E=1e-07 s/c=0.85 id=24% cov=21%
-------------------------------------------------------------LTLDAVLEEQTMNLKDIMKLAPGDQLVL------------------------------------------------
>UniRef50_A8U604(240-330:333) Flagellar motor switch protein fliM n=1 Tax=Carnobacterium sp. AT7 RepID=A8U604_9LACT  E=2e-07 s/c=0.63 id=38% cov=31%
------------------------------------------------------------PVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSV------------------------------------
>UniRef50_A6F9R6(240-303:306) Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F9R6_9GAMM  E=4e-07 s/c=0.87 id=28% cov=47%
-----------------------------------------------------------IPTNINVILAKTQLNLVQLTQLKSGDFIMMDLP--EIVSACTGNHVIAHGRVVVQSGRLVMQVTD-------------
>UniRef50_A3WGR7(239-302:343) Putative uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGR7_9SPHN  E=8e-07 s/c=0.86 id=24% cov=45%
------------------------------------------------------------PLTLEAVVGEIDLTLGRLEQLRPGDKIPL--TISRDLPLRIGETVFARGKVGRLDSNLALRVT--------------
>UniRef50_Q165H9(190-289:382) Putative uncharacterized protein n=2 Tax=Roseobacter RepID=Q165H9_ROSDO  E=2e-06 s/c=0.53 id=26% cov=54%
--------------------------------------------------------VMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPANAFESVELLsIEGARVARGSMGQIDGKRALMLGQLQTPA--------
>UniRef50_A4SI06(144-236:236) Lateral flagellar motor switch protein, LfiM n=2 Tax=Aeromonas RepID=A4SI06_AERS4  E=3e-06 s/c=0.57 id=41% cov=23%
-----------------------------------------------------------IPTRLRVVMGQLSMTLADLECLKVGDVLSLD-----------------------------------------------
>UniRef50_A5P6I7(182-292:298) Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6I7_9SPHN  E=1e-05 s/c=0.46 id=26% cov=48%
--------------------------------------------------------IADVDLPLRAVLVDVPMSIARLASLEPGAVI--QVAVNRSVPLQIGQLTIAHGCVGELDDRVALELT--------------
>UniRef50_Q98HE6(226-293:315) Flagellar motor switch protein; FliM n=2 Tax=Mesorhizobium RepID=Q98HE6_RHILO  E=0.0001 s/c=0.70 id=26% cov=39%
----------------------------------------------------------------------ARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRI---------------
>UniRef50_C7M221(227-288:302) Surface presentation of antigens (SPOA) protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M221_ACIFD  E=0.0005 s/c=0.74 id=26% cov=34%
-------------------------------------------------------RLHDVRLEVSVRFEPTSISSRTLLELAPGDVVPLGHRQGQPAWVIV------------------------------------
>UniRef50_Q3SIG7(2-132:132) Flagellar motor switch/type III secretory pathway protein FliN n=17 Tax=Proteobacteria RepID=Q3SIG7_THIDA  E=6e-27 s/c=0.92 id=57% cov=95%
--------DTTQTIAEDDWAAAMAEQAAPAAAPAPEIFKEFSGSASSTGLANDIDFILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGVRLTDIITPAERIRKLNK
>UniRef50_A4J737(281-409:411) CheC, inhibitor of MCP methylation n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J737_DESRM  E=3e-25 s/c=0.90 id=42% cov=95%
--------GSDDRESDELAGIMMQETAPPPTPAMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPMERVKRLSK
>UniRef50_C1TKI4(257-383:384) Flagellar motor switch protein FliN n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI4_9BACT  E=4e-25 s/c=0.91 id=39% cov=91%
------PSGGGGAGMSQPPS-----GEASPPVDVRPAQFSPLQPAAVdSSLPSNIGLIADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDENFGVRVTEILNVGEKIQSI--
>UniRef50_P24073(247-378:378) Flagellar motor switch phosphatase fliY n=8 Tax=Bacteria RepID=FLIY_BACSU  E=5e-24 s/c=0.84 id=37% cov=95%
------PEPRIEPKQQQQPPKRQGTAKKAAPVQVSPVEFSAFDPnEAVQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERINNL--
>UniRef50_Q3BU42(8-112:112) Flagellar motor switch/type III secretory pathway protein FliN n=9 Tax=Xanthomonas RepID=Q3BU42_XANC5  E=2e-23 s/c=1.05 id=57% cov=61%
----------------------------------------------------NLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRRL--
>UniRef50_B0MPD4(304-417:419) Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPD4_9FIRM  E=3e-23 s/c=0.96 id=36% cov=84%
----------------------MQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIV-KSKFMDSLGK
>UniRef50_A8RWA3(189-320:320) Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8RWA3_9CLOT  E=5e-23 s/c=0.82 id=29% cov=94%
MADM--PCQETGGQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIgeekKKLLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGDRFGARIIEVVGKRE-------
>UniRef50_Q3ADB7(225-347:347) Flagellar motor switch protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADB7_CARHZ  E=5e-23 s/c=0.88 id=35% cov=91%
------------GSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVVLGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILSPKERLSKI--
>UniRef50_Q1NP93(1-136:136) Surface presentation of antigens (SPOA) protein n=2 Tax=Deltaproteobacteria RepID=Q1NP93_9DELT  E=2e-22 s/c=0.78 id=42% cov=88%
----------------DDWSAALADQGKDSPafEELEASGAAGGGGAAPSASTQNLDFLLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNERFGIRVTEIISQADRIKSI--
>UniRef50_A6Q2L3(1-132:133) Flagellar motor switch protein FliN n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2L3_NITSB  E=3e-22 s/c=0.80 id=30% cov=96%
MSEETNPSPEEQNSEEQP---ELSPDELMAQQFAQESYGSE-TEEEDRIEKSKFSILLDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGLKITHVVTPEERLKIL--
>UniRef50_A9HHD1(2-121:125) Flagellar motor switch protein FliN n=2 Tax=Rhodospirillales RepID=A9HHD1_GLUDA  E=7e-21 s/c=0.84 id=37% cov=87%
-------TNDPGIGLEDFSSAAPSPAGAEPDGSATAAGRKQKNGDGSGQ----MEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVVVDDNhIGVTMTEIISSA--------
>UniRef50_C1SNF8(193-298:299) Flagellar motor switch protein FliN n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNF8_9BACT  E=1e-20 s/c=0.94 id=40% cov=69%
-----------------------------------------FGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAERIKKL--
>UniRef50_Q1Q6T3(1-120:120) Strong similar to flagellar motor switch protein FliN n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6T3_9BACT  E=4e-20 s/c=0.83 id=49% cov=61%
----------------------------------------------------NLDLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVVVVEERFGLKITAICGPQDRVRNL--
>UniRef50_C0QPC5(66-186:190) Flagellar motor switch protein FliN n=2 Tax=Aquificales RepID=C0QPC5_PERMH  E=1e-19 s/c=0.81 id=35% cov=82%
------------------------EQMAEKKEEKPEEKPVERFEKPAGLEQEKLDLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTVEDHFGIKITSIITVQERMKLLT-
>UniRef50_D1BCL8(148-244:247) Flagellar motor switch protein FliN n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCL8_SANKS  E=3e-19 s/c=0.99 id=42% cov=58%
----------------------------------------------------NLRLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVVVIDEDYGLRITEIVDLAE-------
>UniRef50_A6DBQ2(170-268:269) Flagellar motor switch protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBQ2_9PROT  E=4e-19 s/c=0.96 id=38% cov=63%
----------------------------------------------------QLDMLMDVKLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGIQITSIGSKADRLNSMKK
>UniRef50_D2R538(94-210:212) Flagellar motor switch protein FliN n=2 Tax=Planctomycetaceae RepID=D2R538_9PLAN  E=6e-19 s/c=0.81 id=42% cov=66%
--------------------------------------FRDLAAAPPSGEKATLELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVLNDNFCVRVAELLS----------
>UniRef50_UPI0001C312B0(13-98:130) flagellar motor switch protein FliN n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B0  E=1e-18 s/c=1.09 id=52% cov=56%
--------------------------------------------------QNDLGRLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVIDEEFGLRITDVL-----------
>UniRef50_B1LV08(24-110:110) Flagellar motor switch protein FliN n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LV08_METRJ  E=2e-17 s/c=1.03 id=44% cov=55%
----------------------------------------------------DLEQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARGEVVLVEDRLGVTMTEIV-----------
>UniRef50_C7M222(2-93:95) Flagellar motor switch protein FliN n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M222_ACIFD  E=2e-17 s/c=0.98 id=47% cov=62%
----------------------------------------------------NLAVLRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAKGEVVVVDDEFGVRILEIISSDE-VDQLTR
>UniRef50_B1ZL53(2-102:108) Flagellar motor switch protein FliN n=6 Tax=Rhizobiales RepID=B1ZL53_METPB  E=3e-17 s/c=0.88 id=38% cov=69%
------------------------------------SPFPEtdlAGNEPRVGDGRNLDSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIVEEdnsRFGVSLTEVVGPS--------
>UniRef50_B1I5E1(3-119:127) Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5E1_DESAP  E=6e-16 s/c=0.73 id=34% cov=75%
---------------------------REPGPTVKKVQFPRFEQAGTPGMPGvriSLEYLDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVINDLFVLRIHSIAHPQ--------
>UniRef50_Q07SI0(6-123:132) Flagellar motor switch protein FliN n=7 Tax=Alphaproteobacteria RepID=Q07SI0_RHOP5  E=1e-15 s/c=0.72 id=37% cov=61%
-------------------------------------------AAEETSRLTNLEPILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVEDensRFGVSLTEIV-----------
>UniRef50_P57183(54-122:133) Flagellar motor switch protein fliN n=3 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=FLIN_BUCAI  E=3e-15 s/c=1.20 id=50% cov=51%
--------------------------------------------------------ILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVVLEEKYGIRITNI------------
>UniRef50_O54245(108-193:198) Flagellar motor switch protein fliN n=15 Tax=Rhizobiales RepID=FLIN_RHIME  E=4e-15 s/c=0.96 id=40% cov=61%
-------------------------------------------TAPGSGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITVLEGdvtRFGVKLLEI------------
>UniRef50_B8DI82(382-514:515) Flagellar motor switch protein n=20 Tax=Listeria RepID=B8DI82_LISMH   E=1e-14 s/c=0.60 id=26% cov=92%
MYQIFNPAAAKEMAQL-MLGIQAKEVAEKEATTPAEIIEPEKPAEPVhqavieeKETLSEMEQILeDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELV-----------
>UniRef50_D1R7U0(393-461:462) Putative type III secretion system protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7U0_9CHLA  E=3e-14 s/c=1.15 id=37% cov=50%
----------------------------------------------------------DIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGDALGVRVLEI------------
>UniRef50_UPI00016A9827(6-100:104) RhcQ protein n=2 Tax=Burkholderia oklahomensis RepID=UPI00016A9827   E=6e-14 s/c=0.83 id=26% cov=67%
--------------------------------AQSQSDEPRFEQEPSRNGKADPSLLDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVTIGYGEFVEIGSRVAVELI--------------
>UniRef50_C6N6Z9(11-101:101) Putative surface presentation of antigens (SPOA) protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N6Z9_9GAMM  E=7e-14 s/c=0.86 id=37% cov=51%
----------------------------------------------------------DIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHEDHFAVQITEIYS----------
>UniRef50_Q8KA38(52-122:133) Flagellar motor switch protein fliN n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=FLIN_BUCAP  E=8e-14 s/c=1.10 id=40% cov=53%
------------------------------------------------------KILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVFSNNKYGIRIISI------------
>UniRef50_C0AR55(196-313:313) Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AR55_9ENTR  E=1e-13 s/c=0.66 id=27% cov=58%
----------------------------------------------------NLQSINSIPVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKIGDNFAVEIQRSFSAQE-------
>UniRef50_C1SLE0(17-84:95) Flagellar motor switch/type III secretory pathway protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SLE0_9BACT  E=5e-13 s/c=1.11 id=36% cov=50%
--------------------------------------------------------------DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDERFAVRITEILEKED-------
>UniRef50_Q0C2D2(11-83:89) Flagellar motor switch protein FliN n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C2D2_HYPNA  E=8e-13 s/c=1.03 id=40% cov=53%
------------------------------------------------------KMLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKLVVTDGQLGVTLSEII-----------
>UniRef50_C3XFR2(35-121:128) Flagellar motor switch protein FliN n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XFR2_9HELI  E=1e-12 s/c=0.85 id=27% cov=60%
--------------------------------------------------------LLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVYERNLAIRINEILDSNAIVYYIAR
>UniRef50_Q0ANV1(17-94:99) Surface presentation of antigens (SPOA) protein n=3 Tax=Alphaproteobacteria RepID=Q0ANV1_MARMM  E=2e-12 s/c=0.95 id=38% cov=53%
----------------------------------------------------DVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQVWILANNHPIARGDVVIQGDRIAVSIT--------------
>UniRef50_B1LY10(28-97:122) Surface presentation of antigens (SPOA) protein n=9 Tax=Alphaproteobacteria RepID=B1LY10_METRJ  E=2e-12 s/c=1.05 id=39% cov=50%
-------------------------------------------------------------VDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGDRISVEVTELIRKA--------
>UniRef50_Q0C5L8(22-95:99) Putative flagellar motor switch protein FliN n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5L8_HYPNA  E=5e-12 s/c=0.97 id=38% cov=54%
--------------------------------------------------------IYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDLFIDDKLIAKGELVETDDgQIAVKIVEIIEKA--------
>UniRef50_B3EAW6(235-323:331) Flagellar motor switch protein FliM n=9 Tax=Desulfuromonadales RepID=B3EAW6_GEOLS  E=2e-11 s/c=0.79 id=32% cov=53%
--------------------------------------------------------ILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELLVKVEGVPKYQGIPGIRHGNKAMQISDIIS----------
>UniRef50_Q8GKQ6(75-163:165) FliM (Fragment) n=1 Tax=Fervidobacterium sp. YNP RepID=Q8GKQ6_9THEM   E=3e-11 s/c=0.78 id=30% cov=51%
-------------------------------------------------------------IDVIAIIGETVLTLGEILTLEVGDVIRLKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIeEPKE-------
>UniRef50_B2VKY4(237-321:338) HrcQ protein (Hrp cluster) n=3 Tax=Enterobacteriaceae RepID=B2VKY4_ERWT9  E=3e-11 s/c=0.82 id=43% cov=41%
-----------------------------------------------------------LPLSLEVRCGRTVMTLGELQQLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDV-----------------------
>UniRef50_P23453(237-322:332) Flagellar motor switch protein fliM n=32 Tax=Bacillales RepID=FLIM_BACSU  E=5e-11 s/c=0.80 id=31% cov=51%
-------------------------------------------------------RIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILD-------------
>UniRef50_B6IT07(3-93:103) Flagellar motor switch protein FliN n=2 Tax=Rhodospirillum centenum RepID=B6IT07_RHOCS  E=6e-11 s/c=0.75 id=35% cov=50%
----------------------------------------------------EISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDRKIDDLSDIIVSGRMVGRGEVTIVEDKIAV-----------------
>UniRef50_Q7NUS2(207-289:296) Surface presentation of antigens; secretory proteins n=1 Tax=Chromobacterium violaceum RepID=Q7NUS2_CHRVO  E=2e-10 s/c=0.81 id=30% cov=50%
----------------------------------------------------DLDRL---PVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVA--------------
>UniRef50_A4SUI1(223-302:308) AscQ protein n=9 Tax=Gammaproteobacteria RepID=A4SUI1_AERS4   E=3e-10 s/c=0.83 id=27% cov=47%
-----------------------------------------------------------LPIQVSFEVGRQTLDWHTLTSLQPGALIDLGTPLDGEVRIISNGHLLGVGRLVEIQGRLGVRV---------------
>UniRef50_C8W1I5(261-327:334) Flagellar motor switch protein FliM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1I5_DESAS  E=7e-10 s/c=0.97 id=29% cov=33%
-------------------------------------------------------------LTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDEDVDLFLEEKL--------------------------------
>UniRef50_A8F895(257-324:330) Flagellar motor switch protein FliM n=10 Tax=Thermotogaceae RepID=A8F895_THELT  E=1e-09 s/c=0.94 id=34% cov=21%
-------------------------------------------------------------MKISAILGEAILSVKEILDLEVGDVIRL------------------------------------------------
>UniRef50_Q1MP57(249-367:368) Putative translocation protein in type III secretion n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MP57_LAWIP  E=2e-09 s/c=0.53 id=31% cov=69%
-----------------------HGQQRTARANSGRQSGQQSSGIDVSG--------LDLPV--VFELERQFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLVDLNGSLGVQVVQVM-----------
>UniRef50_B1T6T2(254-323:329) Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T6T2_9BURK  E=2e-09 s/c=0.91 id=39% cov=45%
-------------------------------------------------------------VELSVELAICRLTLGELANLRAGQMLRLAKAADEMsVDIRYRGTRVARGSLVEINGLLGVRI---------------
>UniRef50_Q72WG8(329-422:484) Type III secretion system protein, YopQ family n=4 Tax=Desulfovibrio vulgaris RepID=Q72WG8_DESVH  E=3e-09 s/c=0.67 id=27% cov=45%
-------------------------------------------------------------VDIVFELERRTMKLNDLAALAPGYTFALGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQV---------------
>UniRef50_UPI00016C0DBD(234-326:327) flagellar motor switch protein FliM n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0DBD  E=3e-09 s/c=0.68 id=22% cov=47%
------------------------------------------------------------------VVGQTHITVKEFIELQIGDIIRLDTTIDSLIDVYVGNVVKFKAVPGIHKNKSAVQIKQILDKED-------
>UniRef50_A2WHU8(236-304:311) Flagellar motor switch/type III secretory pathway protein n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WHU8_9BURK  E=3e-09 s/c=0.91 id=24% cov=50%
----------------------------------------------------------DLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELVELDGRLGVEIHQV------------
>UniRef50_Q0EZ62(239-326:330) Flagellar motor switch protein FliM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ62_9PROT  E=6e-09 s/c=0.70 id=23% cov=50%
------------------------------------------------------------PAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPCSLWIDEIPLFQATPGEKNGGLAAEITEPVQP---------
>UniRef50_B8DI89(7-99:100) Flagellar motor switch protein n=17 Tax=Listeria RepID=B8DI89_LISMH   E=8e-09 s/c=0.66 id=25% cov=49%
-----------------------------------------------------------IGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI------------
>UniRef50_B8FK38(240-323:325) Flagellar motor switch protein FliM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FK38_DESAA  E=1e-08 s/c=0.73 id=38% cov=46%
-------------------------------------------------------------VEICVELGTAVITAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVVKGSKAIavegRIT--------------
>UniRef50_C2ED82(261-334:336) Flagellar motor switch protein FliM n=5 Tax=Lactobacillales RepID=C2ED82_9LACO  E=1e-08 s/c=0.82 id=34% cov=28%
-------------------------------------------------------------------LGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGE---------------------------------
>UniRef50_B8DMT9(337-405:409) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMT9_DESVM  E=2e-08 s/c=0.87 id=27% cov=45%
-------------------------------------------------------------VTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLGGTLGVQV---------------
>UniRef50_Q1JZS7(241-323:329) Flagellar motor switch protein FliM n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZS7_DESAC  E=3e-08 s/c=0.72 id=23% cov=34%
----------------------------------------------------------DMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGK---------------------------------
>UniRef50_A0LDL0(262-332:332) Flagellar motor switch protein FliM n=4 Tax=cellular organisms RepID=A0LDL0_MAGSM  E=3e-08 s/c=0.84 id=26% cov=51%
-------------------------------------------------------------VDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEMAVQIGGMDKFMCHAGVVDGKRAIRITRTVQPQK-------
>UniRef50_Q2CGI2(220-301:316) Possible flagellar motor switch protein FliM n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGI2_9RHOB  E=3e-08 s/c=0.73 id=28% cov=42%
-------------------------------------------------------KIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDLGISAEQPVDVVCGERRMFRGQM--------------------------
>UniRef50_B4U6V4(242-319:321) Flagellar motor switch protein FliM n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6V4_HYDS0  E=5e-08 s/c=0.75 id=25% cov=56%
------------------------------------------------------NLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANRPVKVNIEGMLKMYGVLGRSNSKKAVKILKLLDNKE-------
>UniRef50_B6IQ99(254-349:352) Flagellar motor switch protein FliM n=2 Tax=Rhodospirillum centenum RepID=B6IQ99_RHOCS  E=7e-08 s/c=0.61 id=30% cov=22%
-------------------------------------------------------------VDLSAVLGQAQVSLTDLLAWKEGTQLVLD-----------------------------------------------
>UniRef50_Q30SP5(257-330:372) Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=48 Tax=Epsilonproteobacteria RepID=Q30SP5_SULDN  E=1e-07 s/c=0.77 id=25% cov=46%
-------------------------------------------------------------------LGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGKIGLRRFRKSVQVTEIIDTE--------
>UniRef50_Q73AJ1(6-77:79) Flagellar motor switch protein, putative n=64 Tax=Bacillus cereus group RepID=Q73AJ1_BACC1  E=5e-07 s/c=0.77 id=25% cov=50%
----------------------------------------------------------DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL------------
>UniRef50_Q2SEZ1(161-250:252) Flagellar motor switch protein FliM-like protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEZ1_HAHCH  E=1e-06 s/c=0.60 id=36% cov=28%
--------------------------------------------------------------KLSVRLNSVELTINEVTSLQAGDVIKLDHKLTEPALVF-------------------------------------
>UniRef50_A4Y0Q1(237-310:321) Surface presentation of antigens (SPOA) protein n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0Q1_PSEMY  E=2e-06 s/c=0.73 id=22% cov=46%
---------------------------------------------PVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPM--RLLERCDVQINQQKLFRG----------------------------
>UniRef50_B8HEJ5(187-298:298) Surface presentation of antigens (SPOA) protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEJ5_ARTCA  E=2e-06 s/c=0.48 id=35% cov=36%
-----------------------------------------------------------VPVDVAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLA------------------------------
>UniRef50_C6WJP9(244-317:320) Flagellar motor switch protein FliM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJP9_ACTMD  E=3e-06 s/c=0.72 id=33% cov=36%
-----------------------------------------------------------VPVAVSVKFQSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFA------------------------------
>UniRef50_Q1NGL0(206-295:295) Flagellar switch protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGL0_9SPHN  E=3e-06 s/c=0.58 id=24% cov=36%
----------------------------------------------------------DIRLPARTVLARPNLSLADLMELKVGDVIP--VTIGRALPLIVGNRIVAHG----------------------------
>UniRef50_A6GN30(294-359:359) Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN30_9BURK  E=5e-06 s/c=0.79 id=25% cov=46%
-------------------------------------------------------------IELEIHAGKTKILFNELCSVQEGTLIELREHALPMVTLCVMGSPILEGELVHFQDQLMVQVT--------------
>UniRef50_D2R066(266-337:362) Flagellar motor switch protein FliM n=4 Tax=Planctomycetaceae RepID=D2R066_9PLAN  E=1e-05 s/c=0.71 id=30% cov=31%
-------------------------------------------------------------VELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQG----------------------------------
>UniRef50_Q0G106(217-318:321) Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G106_9RHIZ  E=1e-05 s/c=0.50 id=22% cov=50%
-------------------------------------------------------------LHLEAVLARKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVARFEEAVDP---------
>UniRef50_B4UFI3(226-328:338) Flagellar motor switch protein FliM n=3 Tax=Anaeromyxobacter RepID=B4UFI3_ANASK  E=3e-05 s/c=0.48 id=33% cov=34%
-----------------------------------------------------------VPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGR---------------------------------
>UniRef50_C9PEF5(187-251:253) Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PEF5_VIBFU  E=5e-05 s/c=0.75 id=22% cov=39%
----------------------------------------------------------DIPFNINVVLMKSELSINDVNAIAVGDFIELQKY--DLLDVNVENQTLFKGQLIV------------------------
>UniRef50_Q31FP9(255-320:339) Flagellar motor switch protein FliM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FP9_THICR  E=7e-05 s/c=0.73 id=23% cov=48%
-----------------------------------------------------------IEIELAVNLLELQMSMDDLMKMEKGDIIPIEMP--ELVTVKAEGIGVLKGKVGESRDRKAVKIEQIL-----------
>UniRef50_A4A5Y9(214-320:327) Flagellar motor switch protein FliM n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5Y9_9GAMM  E=0.0001 s/c=0.45 id=22% cov=36%
-----------------------------------------------------------IELEVAGVLATQSIALADLLELEAGAVIPL--APAEQVSLKVDNVTLAEG----------------------------
>UniRef50_B1M7I2(211-301:309) Flagellar motor switch protein FliM n=4 Tax=Alphaproteobacteria RepID=B1M7I2_METRJ  E=0.0005 s/c=0.50 id=30% cov=22%
------------------------------------------------------------PVTLKAILEEKPLALGEIADLAVGQVLEL------------------------------------------------
>UniRef50_A5D0K1(294-422:422) Flagellum motor switch protein n=4 Tax=Bacteria RepID=A5D0K1_PELTS   E=3e-27 s/c=0.95 id=42% cov=95%
--------PEPGKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVILGRTRWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGPEERLQNLRR
>UniRef50_Q6MI47(1-122:122) Flagellar motor switch protein FliN n=2 Tax=Deltaproteobacteria RepID=Q6MI47_BDEBA  E=2e-26 s/c=0.98 id=45% cov=89%
--------------MSDDTLDNLADQLVAEAAGMAESSGRKASSEMPTHKDRNLSLILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNEKFGVRLTDIISPAERVEQL--
>UniRef50_B8CYQ5(247-375:375) CheC, inhibitor of MCP methylation n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ5_HALOH  E=2e-25 s/c=0.90 id=45% cov=79%
--------------------------AGEENVDVKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDENFGFRVKDIISPMERLN----
>UniRef50_A5IJA7(246-345:346) CheC, inhibitor of MCP methylation n=5 Tax=Thermotogaceae RepID=A5IJA7_THEP1  E=2e-24 s/c=1.13 id=55% cov=62%
----------------------------------------------------KLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKERLELLN-
>UniRef50_A6W8L1(129-246:249) Flagellar motor switch protein FliN n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L1_KINRD  E=7e-24 s/c=0.94 id=46% cov=80%
---------------------GLTLTAQPDTTPAPMPSFAPAGTPAPAGPRRTMDLLRDVQMDVTVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITEIVTPE--------
>UniRef50_C4ZAN3(284-397:404) Flagellar motor switch protein n=2 Tax=Clostridiales RepID=C4ZAN3_EUBR3  E=4e-23 s/c=0.95 id=46% cov=70%
-------------------------------VNVQNAQFTPFGAMPNQvYQPENIDLIMDVPLEVTVELGRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIV-----------
>UniRef50_Q6AJS8(35-123:123) Probable flagellar motor switch protein (FliN) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJS8_DESPS  E=2e-22 s/c=1.19 id=41% cov=64%
---------------------------------------------------RSLDFLYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAVMIGDKFGIRLTDVVSASDRLERLGK
>UniRef50_Q67K24(5-121:126) Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K24_SYMTH  E=7e-22 s/c=0.90 id=38% cov=80%
--------------------AALFAQARQGEQKPEAAAFPDLNPEGSAqGDPSPLGLLADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINPE--------
>UniRef50_Q0AA08(82-226:226) Flagellar motor switch protein FliN n=49 Tax=cellular organisms RepID=Q0AA08_ALHEH  E=3e-21 s/c=0.71 id=46% cov=82%
-----------------------QENWQAERAELDELEPDAGAGRNLGDEEANLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNERFGIRLTDVISAAERVKKL--
>UniRef50_C4Z5H2(319-436:437) Flagellar motor switch protein FliN/FliY n=3 Tax=Bacteria RepID=C4Z5H2_EUBE2  E=3e-21 s/c=0.87 id=39% cov=82%
--------------MQGMMGQPMPMQgyAQPQDVNVAPAAFQPFATDvNPISQKENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFGVRITEII-----------
>UniRef50_B0P9X9(329-442:446) Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X9_9FIRM  E=2e-20 s/c=0.88 id=39% cov=77%
-------------------------------INVQNTQFPQFTvqQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELMESL--
>UniRef50_Q30SP4(162-282:283) Flagellar motor switch FliN n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SP4_SULDN  E=4e-20 s/c=0.82 id=35% cov=82%
-----------------------QKDKTLGDDRKNESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITSIGTKRERLNQL--
>UniRef50_D0YPX2(147-253:254) Flagellar motor switch protein FliN n=2 Tax=Mobiluncus mulieris RepID=D0YPX2_9ACTO  E=1e-18 s/c=0.88 id=44% cov=60%
-----------------------------------------------------MKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNR---
>UniRef50_A8UW94(25-151:164) Flagellar motor switch FliN n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UW94_9AQUI  E=1e-18 s/c=0.74 id=38% cov=78%
-----------------------QEEVQPAEAPPQEQVAEKKVTE--RDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRETTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERK------
>UniRef50_B2USQ1(201-287:288) Flagellar motor switch protein FliY n=14 Tax=Helicobacter pylori RepID=B2USQ1_HELPS  E=5e-18 s/c=1.06 id=38% cov=64%
-------------------------------------------------EIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDIGTKKERLEQL--
>UniRef50_Q0EZ61(2-98:98) Flagellar protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ61_9PROT  E=5e-18 s/c=0.95 id=40% cov=62%
----------------------------------------------------NLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQILANGSIFAKGEVVSTGDKLGVRITEIVPASARISSLS-
>UniRef50_A5FYJ9(11-130:132) Flagellar motor switch protein FliN n=17 Tax=Alphaproteobacteria RepID=A5FYJ9_ACICJ  E=6e-18 s/c=0.77 id=36% cov=88%
-SEITTPTGEPNGNGQVLSDLPLAPVSRRTAGDGPETQRPS----------RDLEAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVELDRKAGDPIDIFVNNRLIARGEVVMLDEtKLGITMTEIV-KSDR------
>UniRef50_Q2WA21(22-103:108) Flagellar motor switch/type III secretory pathway protein n=6 Tax=Rhodospirillales RepID=Q2WA21_MAGSA  E=9e-17 s/c=1.07 id=46% cov=55%
---------------------------------------------------RDLEAVYDIPVQVSAVLGKATMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEII-----------
>UniRef50_A6CBY5(167-292:295) Probable flagellar motor switch protein fliN n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CBY5_9PLAN  E=2e-16 s/c=0.69 id=22% cov=78%
------------------------EPEADPAPQPSPSSTPQATPQMVQATPANsnrnpLNRISKLPVQAIVKLASKKIEMNQLLSICPGSLITFDKPCEDPLELYINNQVYCLGEAVKIGEHFGLKIDRVGFKEE-------
>UniRef50_B6IQ95(29-115:119) Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum SW RepID=B6IQ95_RHOCS  E=4e-16 s/c=0.99 id=42% cov=57%
----------------------------------------------------ELRAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEVVIVDDgRLGVTMTEIVKAE--------
>UniRef50_C0GJH0(1-139:150) Surface presentation of antigens (SPOA) protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJH0_9FIRM  E=7e-16 s/c=0.61 id=32% cov=68%
---------------------------------VERVEFPEFVQAPQGAKERGVNFFESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDNFGFRVAEV------------
>UniRef50_Q058C3(56-130:134) Flagellar motor switch protein, C-ring protein n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q058C3_BUCCC  E=3e-15 s/c=1.10 id=51% cov=50%
-----------------------------------------------------------IPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNNDCYGVQITKLLT----------
>UniRef50_C1ZEH8(262-393:396) Flagellar motor switch/type III secretory pathway protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEH8_PLALI  E=9e-15 s/c=0.61 id=27% cov=88%
---------------DDLLSNYEGLAAQDPMESAAPLA-QETMPQQSVTSQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCEDLLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPEKPSSL--
>UniRef50_C9R9Y4(2-103:114) Surface presentation of antigens (SPOA) protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R9Y4_AMMDK  E=1e-14 s/c=0.80 id=36% cov=57%
-----------------------------------------------------LELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGRGEVMVLNERFVVRVLQVFPPQE-------
>UniRef50_Q57259(62-175:179) Flagellar motor switch protein fliN n=2 Tax=Rhizobium/Agrobacterium group RepID=FLIN_AGRT5  E=1e-14 s/c=0.71 id=38% cov=59%
-----------------------------------------------SGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLS----------
>UniRef50_Q6MBC5(337-443:445) Putative flagellar motor switch protein (= type III secretion translocase SctQ) n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MBC5_PARUW  E=2e-14 s/c=0.75 id=30% cov=79%
-----------NFTLDEVTEEEQSSPKNNASQSSPASSITENTKTGLITPNQ-------IPVNLTVEVGRIQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVLGVRVLEL------------
>UniRef50_B1K3A4(21-105:113) Flagellar motor switch protein FliN n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3A4_BURCC  E=4e-13 s/c=0.89 id=46% cov=49%
-----------------------------------------------------------IPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGTPVGLGEVVVSGEHYGLRIIEL------------
>UniRef50_A4J755(15-122:128) Surface presentation of antigens (SPOA) protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J755_DESRM  E=6e-13 s/c=0.70 id=36% cov=55%
-----------------------------------------------------LSHIEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVNDKFAVRINSITSP---------
>UniRef50_A2S1D1(524-638:645) Type III secretion inner membrane protein SctQ n=66 Tax=Burkholderia RepID=A2S1D1_BURM9  E=7e-13 s/c=0.65 id=23% cov=81%
---------DRAGDLPAPSAAHSSPGSLAGLPAGLQADAPPRDARYAAPEPADLG---EVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDvPVRLVAYGQAIGGGRLVAVGAHLGVRI---------------
>UniRef50_C6CGS2(264-373:387) Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Dickeya RepID=C6CGS2_DICZE  E=7e-13 s/c=0.68 id=22% cov=67%
--------------------------------ASEASPYAEYGAPDGDNPAGALSgyALPPLTLALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQIT--------------
>UniRef50_D2R2R8(240-314:329) Surface presentation of antigens (SPOA) protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2R8_9PLAN  E=9e-13 s/c=0.99 id=30% cov=55%
--------------------------------------------------------ILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCDSELSLQVGEHEVAIGEAVKVGEKFGLRLTSMVMPPER------
>UniRef50_A4XNA3(7-131:133) Surface presentation of antigens (SPOA) protein n=1 Tax=Pseudomonas mendocina ymp RepID=A4XNA3_PSEMY  E=1e-12 s/c=0.59 id=22% cov=88%
-------SQESLQEMAEMDADAL-PEGFEERPGEMHLEGQEFAPQDehasavEPQQMAALGSIAHLPLQLTLRCGQLTLSVDQLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELVDVDGRLGLQITRMAT----------
>UniRef50_B4R925(18-96:108) FliN family protein n=8 Tax=Alphaproteobacteria RepID=B4R925_PHEZH   E=4e-12 s/c=0.92 id=35% cov=46%
-------------------------------------------------------------VEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVARGEIQISDDKIAIAVT--------------
>UniRef50_D2TZ40(221-292:292) Type III secretion apparatus protein YscQ,HrcQ,SpaO n=1 Tax=Arsenophonus nasoniae RepID=D2TZ40_9ENTR  E=7e-11 s/c=0.95 id=36% cov=48%
----------------------------------------------------------DIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDRLGVEIT--------------
>UniRef50_D2TXN7(220-299:325) Type III secretion component protein SctQ n=1 Tax=Arsenophonus nasoniae RepID=D2TXN7_9ENTR  E=2e-10 s/c=0.83 id=20% cov=52%
----------------------------------------------------------EIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVPVNGDVRIIANQQPLGTGQLVEIQGRLGIKVVELFAK---------
>UniRef50_C1SNF9(254-330:336) Flagellar motor switch protein FliM n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNF9_9BACT  E=4e-10 s/c=0.85 id=32% cov=53%
----------------------------------------------------------DTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQKFLGEVGTLGVKKAVKITQFITESD-------
>UniRef50_C7R0I8(189-303:308) Flagellar motor switch protein FliM n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0I8_JONDD  E=8e-10 s/c=0.57 id=25% cov=49%
----------------------------------------------------------DVPVDVGVRFNSITVRPRDIIDMAVGDVIELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTD-------------
>UniRef50_Q2NVI2(209-293:304) Type III secretion apparatus SpaO n=2 Tax=Sodalis glossinidius RepID=Q2NVI2_SODGM  E=1e-09 s/c=0.76 id=28% cov=47%
-----------------------------------------------------------VPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGELVTLeDERLAVEIT--------------
>UniRef50_B6XHD9(201-307:309) Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XHD9_9ENTR  E=2e-09 s/c=0.59 id=30% cov=50%
-----------------------------------------------------------LTVKLTFVLGHSDITVGELDTLQPGTVYSIGENKEREVKVYANKQLIAEGELTYIGDSdeLGLEIKRLVS----------
>UniRef50_UPI000197BD31(204-308:310) type III secretion apparatus protein n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BD31  E=3e-09 s/c=0.60 id=27% cov=49%
-------------------------------------------------------------IKLTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFIAEGELIYIGnsDELGLEITHVVS----------
>UniRef50_C0C1P2(256-331:336) Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1P2_9CLOT  E=3e-09 s/c=0.82 id=17% cov=51%
------------------------------------------------------------TMEIKAELAEAQLSMKEVCGLKVGDVIDLNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE--------
>UniRef50_Q1GCD9(2-92:98) Flagellar motor switch protein fliN n=20 Tax=Rhodobacterales RepID=Q1GCD9_SILST  E=2e-08 s/c=0.66 id=28% cov=49%
-----------------------------------------------------------VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEgdqaGQLAVRLTEI------------
>UniRef50_C4K8R1(209-317:320) Type III secretion system protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K8R1_HAMD5  E=3e-08 s/c=0.55 id=22% cov=77%
---------DSDTESNDFSYKAPSDEDAPDA--SSPDVIPEFEEEPKKISLNEFTQ------TLVMEIGRINIPIQDLNQLFVGKTLNCKTSFYGEVMIRLNGRKIGSGNLLNCDGELIVRI---------------
>UniRef50_B2VG16(219-293:308) Type III secretion apparatus n=1 Tax=Erwinia tasmaniensis RepID=B2VG16_ERWT9  E=4e-08 s/c=0.79 id=28% cov=49%
-----------------------------------------------------------LPVDIEFVLDKYTVTLAELEEITPGVALPLKPAAEKKIKIYLNRKLFACGELVALeDGSFAVEINQV------------
>UniRef50_B6WRL8(272-378:398) Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRL8_9DELT  E=4e-08 s/c=0.55 id=38% cov=46%
-------------------------------------------------------------LPVVFEIGRLHLRLDELAALVPGHTLALGGETPSPvVDIRVAGQLLAQGRLVDVGGIPGVQIT--------------
>UniRef50_B9KJD8(221-318:323) Flagellar switch protein n=8 Tax=Rhodobacterales RepID=B9KJD8_RHOSK   E=9e-08 s/c=0.59 id=27% cov=36%
--------------------------------------------------------ILSIPLTLSARLCEPEVPLRQLMQMQPGDV--LPVHLTEAVSLLVEGQPI-------------------------------
>UniRef50_B6R823(223-311:321) Flagellar motor switch protein FliM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R823_9RHOB  E=4e-07 s/c=0.63 id=28% cov=50%
-------------------------------------------------------------VKLTAILEEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQE--------
>UniRef50_Q5ZUK6(257-353:355) Flagellar protein n=4 Tax=Legionella pneumophila RepID=Q5ZUK6_LEGPH   E=7e-07 s/c=0.57 id=19% cov=50%
--------------------------------------------------------LMDVELTVSASMAETVSTLGQVMAWKVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKII-----------
>UniRef50_A1SEN6(236-333:335) Flagellar motor switch protein FliM n=1 Tax=Nocardioides sp. JS614 RepID=A1SEN6_NOCSJ  E=8e-07 s/c=0.56 id=29% cov=37%
-----------------------------------------------------------VPVEVAVSLRPTTLSPMELAALRPGDALRLRHPAAAPLEVVVDGTCFAHA----------------------------
>UniRef50_Q51465(235-322:323) Flagellar motor switch protein fliM n=158 Tax=Proteobacteria RepID=FLIM_PSEAE  E=1e-06 s/c=0.62 id=22% cov=23%
--------------------------------------------------------VLDVQVPLGATVVRRQLKLRDILHMQPGDVI--------------------------------------------------
>UniRef50_C0QAJ4(219-319:326) FliM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAJ4_DESAH   E=3e-06 s/c=0.52 id=33% cov=36%
-------------------------------------------------------IILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTGYVDG----------------------------------
>UniRef50_A0Y177(55-195:230) Flagellar motor switch protein M n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y177_9GAMM  E=4e-06 s/c=0.37 id=25% cov=23%
--------------------------------------------------------IMDVEVDMSTQLLEVDLTLQQIMELKAGDII--------------------------------------------------
>UniRef50_Q1IR62(250-326:329) Flagellar motor switch protein FliM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR62_ACIBL  E=8e-06 s/c=0.67 id=20% cov=36%
--------------------------------------------------------LLGCPFPVSLGLVDASVRVRELLQLRAGDILPLKRSAESAIELSVGGR---------------------------------
>UniRef50_D2S983(210-306:321) Flagellar motor switch protein FliM n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S983_9ACTO  E=8e-06 s/c=0.53 id=25% cov=39%
-------------------------------------------------------RLTQVPVDVGVRFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVTFA------------------------------
>UniRef50_Q12PK7(24-163:181) Surface presentation of antigens (SPOA) protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12PK7_SHEDO  E=9e-06 s/c=0.37 id=24% cov=25%
------------------------------------------------------DEIMDVQVGFDANIVEHELTLRDVMGLRAGDII--------------------------------------------------
>UniRef50_B1ZR35(269-333:351) Flagellar motor switch protein FliM n=3 Tax=Verrucomicrobia RepID=B1ZR35_OPITP  E=2e-05 s/c=0.77 id=23% cov=38%
------------------------------------------------------------------------ISLREVVSLRVGDVFELPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLT--------------
>UniRef50_A8GYM9(197-282:293) Putative uncharacterized protein n=3 Tax=Shewanella RepID=A8GYM9_SHEPA  E=0.0001 s/c=0.55 id=24% cov=30%
-----------------------------------------------------------IPLRVLLELGHQSTSLTSLQNLAVGDVLPMNLHSRCPVTV--------------------------------------
>UniRef50_A3W8C2(228-291:342) Possible flagellar switch protein FliM n=2 Tax=Roseovarius RepID=A3W8C2_9RHOB  E=0.0001 s/c=0.74 id=26% cov=25%
------------------------------------------------------------PVVLDAVMGRLRLPLRDVWAFKPGDLVPIPREA--------------------------------------------
>UniRef50_P35539(1-106:106) Flagellar motor switch protein fliN (Fragment) n=77 Tax=Proteobacteria RepID=FLIN_PECCC  E=1e-27 s/c=1.16 id=83% cov=78%
-------------------------------RPTTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIITPSERMRRLSR
>UniRef50_Q0AYM4(285-397:398) CheC, inhibitor of MCP methylation n=5 Tax=Firmicutes RepID=Q0AYM4_SYNWW  E=2e-25 s/c=1.03 id=58% cov=62%
---------------------------------------------------QNLDLIMDVPLDVSVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDRMNKL--
>UniRef50_C0ZF88(330-454:455) Flagellar motor switch protein FliY n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF88_BREBN  E=8e-24 s/c=0.89 id=47% cov=77%
-------------------------------ANVVPAQFAPLGGAPMyTGDIQNLNLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVVVIDENFGVRVTDIISQIDRVQKL--
>UniRef50_Q30VB8(79-175:175) Surface presentation of antigens (SPOA) protein n=4 Tax=Deltaproteobacteria RepID=Q30VB8_DESDG  E=3e-22 s/c=1.09 id=57% cov=63%
--------------------------------------------------KRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIERVKQL--
>UniRef50_A7GZX6(171-286:286) Iron chelatin ABC transporter, substrate binding protein n=20 Tax=Campylobacter RepID=A7GZX6_CAMC5  E=1e-21 s/c=0.89 id=37% cov=80%
-----------------------SESQSGDQAKATHGSRSEFSAE----EMRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQIGSKRERLQQL--
>UniRef50_C2KZ02(334-472:472) Possible flagellar motor switch protein FliY n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ02_9FIRM  E=2e-17 s/c=0.65 id=40% cov=65%
----------------------------------------ENEGGGAGENPDNREMLMKVPLEISVEIGRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDIVVVEENFGIRITEILKK---------
>UniRef50_A1UTV7(47-139:139) Flagellar motor switch protein fliY n=35 Tax=Rhizobiales RepID=A1UTV7_BARBK  E=4e-17 s/c=0.95 id=41% cov=57%
---------------------------------------------------NNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDIVVNGRIIARGEVIVLEDdssRFGVSLTEVIDK---------
>UniRef50_C0C1N9(327-455:460) Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1N9_9CLOT  E=5e-17 s/c=0.69 id=49% cov=57%
----------------------------------------------------NLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDKLAGEQVDLFVNGQCIAQGDVVVVDDNFGIRITEILADE--------
>UniRef50_Q03593(1-109:110) Flagellar motor switch protein fliN n=21 Tax=Alphaproteobacteria RepID=FLIN_CAUCR  E=7e-17 s/c=0.81 id=45% cov=55%
----------------------------------------------------DLAPVFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDERLGVTMTEII-----------
>UniRef50_B6R821(1-134:138) Flagellar motor switch protein FliN n=2 Tax=Rhodobacteraceae RepID=B6R821_9RHOB  E=2e-16 s/c=0.65 id=34% cov=91%
---MSSSNEMSDEALALQWEAAASEAEMDMDMAAPAASAQPAASAPEKGvsdenVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVVNGRTVARGEIVVVEDdnsRFGVSLTEIV-----------
>UniRef50_B9JRN7(126-218:220) Flagellar motor switch protein FliN n=2 Tax=Rhizobiales RepID=B9JRN7_AGRVS  E=2e-16 s/c=0.93 id=39% cov=55%
----------------------------------------------------NLDLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEITVLENddtRFGVKLIEVMS----------
>UniRef50_A4SI07(1-116:125) Lateral flagellar motor switch protein, lfiN n=2 Tax=Aeromonas RepID=A4SI07_AERS4  E=2e-16 s/c=0.75 id=47% cov=59%
----------------------------------------------SSSKQRDLSFFRQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGKYGLRLVDVI-----------
>UniRef50_A8AKJ4(1-126:132) Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8AKJ4_CITK8  E=3e-16 s/c=0.68 id=32% cov=89%
MSDLQHELSQSLDLDDLNLSDMTQEDTVEGNIRLDLQPETRNTA---MTDIRKMALFSRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLNDKYGLRIIE-------------
>UniRef50_A5D0I4(14-113:126) Flagellar motor switch/type III secretory pathway protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0I4_PELTS  E=4e-16 s/c=0.86 id=47% cov=50%
----------------------------------------------------------DVQIEISVELGQTVMKVREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDSFGVRITSI------------
>UniRef50_Q0G104(1-123:131) Flagellar motor switch FliN protein:Surface presentation of antigens (SPOA) protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G104_9RHIZ  E=1e-15 s/c=0.68 id=36% cov=77%
-----------------------SEIEHSGQPYMDEEGGEEDDRRPDfrGADKMDLDLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVLdqdDQQFGVTLTEVATP---------
>UniRef50_A5P6I8(8-83:96) Flagellar motor switch protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6I8_9SPHN  E=3e-15 s/c=1.09 id=47% cov=53%
-------------------------------------------------------LIQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQGNRFAIRVLEIV-----------
>UniRef50_B6IW97(6-97:105) Flagellar motor switch protein FliN n=1 Tax=Rhodospirillum centenum SW RepID=B6IW97_RHOCS  E=5e-15 s/c=0.89 id=42% cov=57%
--------------------------------------------------------ILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVVVDGRLGLTIVELMPQASRGR----
>UniRef50_A3SFT8(23-107:114) Surface presentation of antigens (SPOA) protein n=2 Tax=Sulfitobacter RepID=A3SFT8_9RHOB  E=2e-14 s/c=0.95 id=46% cov=54%
-----------------------------------------------------LDAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRVqGDSLGVALREIV-----------
>UniRef50_A7K019(248-314:322) Type III secretion inner membrane protein YscQ n=13 Tax=Vibrionaceae RepID=A7K019_VIBSE  E=4e-14 s/c=1.18 id=31% cov=49%
-----------------------------------------------------------LPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEHLGVRVLEL------------
>UniRef50_C9PEF6(30-125:128) Flagellar motor switch protein FliN n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PEF6_VIBFU  E=7e-14 s/c=0.82 id=41% cov=55%
-------------------------------------------------------LIRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDGKYGVQVLALVNNE--------
>UniRef50_B2A358(253-328:333) Flagellar motor switch protein FliM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A358_NATTJ  E=8e-13 s/c=0.99 id=30% cov=48%
-------------------------------------------------------------VPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNKLAVQITQIV-----------
>UniRef50_A9APA9(333-443:443) Type III secretion system apparatus protein YscQ/HrcQ n=17 Tax=Burkholderia RepID=A9APA9_BURM1  E=1e-12 s/c=0.67 id=34% cov=53%
-------------------------------------------------------------VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSViHLVANGMLIGTGHLIAVGQKLGVRVVTLTQPAPRER----
>UniRef50_C0QPA3(1-78:79) Flagellar motor switch phosphatase FliY n=1 Tax=Persephonella marina EX-H1 RepID=C0QPA3_PERMH  E=2e-12 s/c=0.95 id=32% cov=54%
----------------------------------------------------DISFLKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVANEKYGIRVVDL------------
>UniRef50_Q67K08(215-308:308) Flagellar motor switch protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K08_SYMTH  E=4e-12 s/c=0.77 id=34% cov=50%
------------------------------------------------------------PLPVKALLGKTRMRLGEFLALQVGDVIRLDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRVT----------
>UniRef50_Q2NTE6(221-337:350) Putative type III secretion apparatus n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTE6_SODGM  E=2e-11 s/c=0.60 id=23% cov=81%
-------------ALMQDIAAQLEYDAPGDATRPGAPPAATADSGGRAAITDDVNrttlLLNALPQQVRVDVGELSLTVGDLRRLAVGDVVPVTGRFTPYAILRLHNQTIGQGELVSCDGALLVRIT--------------
>UniRef50_Q5DY32(19-112:123) Lateral flagellar export/assembly protein (FliN-like) n=9 Tax=Enterobacteriaceae RepID=Q5DY32_ECOLX  E=3e-11 s/c=0.74 id=45% cov=48%
-----------------------------------------------------------IPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLE-------------
>UniRef50_Q2RPI0(13-85:93) Surface presentation of antigens (SPOA) protein n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RPI0_RHORT  E=6e-11 s/c=0.94 id=38% cov=50%
-----------------------------------------------------------VPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYANDILVARGEVIITDgDKIGVTLTELV-----------
>UniRef50_D2BZ47(272-380:394) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Dickeya dadantii Ech586 RepID=D2BZ47_DICD5  E=9e-11 s/c=0.62 id=24% cov=79%
------PTPfDNTASYGDTTLDACNVQHTSPCAESTLPSGEPLSGYPLPP----------LALALTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEATLYHGEQPLAQGELVNVEGRLGLQIT--------------
>UniRef50_B8FTQ9(259-325:331) Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=B8FTQ9_DESHD  E=2e-10 s/c=1.00 id=25% cov=49%
-------------------------------------------------------------VDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVE----------
>UniRef50_Q3JLG5(342-427:435) SctQ n=18 Tax=pseudomallei group RepID=Q3JLG5_BURP1   E=3e-10 s/c=0.77 id=27% cov=46%
-------------------------------------------------------------LPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDArLRLVVHGQTVGYGELVAVGEHLGVRII--------------
>UniRef50_C1TKI5(258-325:334) Flagellar motor switch protein FliM n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKI5_9BACT  E=4e-10 s/c=0.97 id=25% cov=47%
-------------------------------------------------------------VPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGRPGTVDGRYSVEVLEV------------
>UniRef50_A1TJB9(226-335:352) Type III secretion system apparatus protein YscQ/HrcQ n=4 Tax=Acidovorax RepID=A1TJB9_ACIAC  E=9e-10 s/c=0.59 id=31% cov=47%
-----------------------------------------------------------IRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDAtVRLVCHGQVVGTGRLVVIGDHLGVRI---------------
>UniRef50_A3EQZ9(225-331:338) Flagellar motor switch protein FliM n=2 Tax=Leptospirillum sp. Group II RepID=A3EQZ9_9BACT  E=1e-09 s/c=0.60 id=30% cov=32%
------------------------------------------------------------PLEIEAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEG----------------------------------
>UniRef50_A9KNE7(252-325:325) Flagellar motor switch protein FliM n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNE7_CLOPH  E=1e-09 s/c=0.87 id=21% cov=28%
---------------------------------------------------------------VKAVLGKSSISLNELINMQKGDIIKLDRKIDDELSVYV------------------------------------
>UniRef50_D1SX13(269-355:373) Type III secretion system apparatus protein YscQ/HrcQ n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SX13_9BURK  E=2e-09 s/c=0.73 id=31% cov=47%
-----------------------------------------------------------IRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDAtVRLVCHGQVVGTGRLVVIGESLGVRI---------------
>UniRef50_C8BNU6(279-389:393) HrcQ n=1 Tax=Pseudomonas syringae pv. syringae RepID=C8BNU6_PSESY   E=3e-09 s/c=0.57 id=28% cov=50%
----------------------------------------------------------DLALPLTLRCGQINLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELVDVEGRLGLQILQV------------
>UniRef50_B9KJS2(193-308:331) Surface presentation of antigens (SPOA) protein n=5 Tax=Rhodobacter RepID=B9KJS2_RHOSK  E=3e-09 s/c=0.54 id=19% cov=54%
---------KTGQLLLAVPADGRGELPHHGGQDEAPPPLSDFGAAMA-------EQVMAVDCRLEAVLGRITLPLAHVLDWQPGDTVPL------------------------------------------------
>UniRef50_Q18D13(218-292:293) Putative flagellar motor switch protein n=5 Tax=Clostridium difficile RepID=Q18D13_CLOD6  E=4e-09 s/c=0.83 id=21% cov=52%
-----------------------------------------------------------IELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE--------
>UniRef50_A1JQ94(204-304:312) Type III secretion apparatus protein n=4 Tax=Yersinia RepID=A1JQ94_YERE8  E=5e-09 s/c=0.62 id=31% cov=42%
-----------------------------------------------------------LTVKLTFVLGHSEILLEELAHIQPGSVYSLGADKDREVKVYANKQLVAEGELIYIGD---------------------
>UniRef50_Q1D0N5(349-415:416) Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Cystobacterineae RepID=Q1D0N5_MYXXD  E=7e-09 s/c=0.92 id=28% cov=47%
-----------------------------------------------------------LPVDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVGARV---------------
>UniRef50_A7H8B4(254-330:334) Type III secretion system apparatus protein YscQ/HrcQ n=4 Tax=Anaeromyxobacter RepID=A7H8B4_ANADF  E=1e-08 s/c=0.79 id=36% cov=49%
-----------------------------------------------------------LPVVLEVELARVEVTLAELARLEPGGILPLALDRRGLVTLRAGERAVARGELVDVDGAVGVRIIDL------------
>UniRef50_A8UVU1(242-315:322) Flagellar motor switch protein FliM n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVU1_9AQUI  E=1e-08 s/c=0.83 id=26% cov=42%
-----------------------------------------------------LSNLMGTPVLLEAILPTLVMNVHELLEMKEGDFIPLDPRATDSITVKVAGVPMFKG----------------------------
>UniRef50_Q18CW8(18-98:104) Flagellar motor switch protein n=5 Tax=Clostridium difficile RepID=Q18CW8_CLOD6  E=1e-08 s/c=0.75 id=35% cov=47%
-------------------------------------------------------------VNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESIITNETLSVRLSKI------------
>UniRef50_A3VS57(4-84:90) Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VS57_9PROT  E=1e-08 s/c=0.75 id=33% cov=51%
--------------------------------------------------------LYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIATGELCEGDtgpESLALRILDL------------
>UniRef50_B2TCZ8(256-317:327) Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TCZ8_BURPP  E=2e-08 s/c=0.97 id=37% cov=44%
------------------------------------------------------------------VIGTLSLTLDELMRLRTGSTVSLQQPVGRHaIRLLCQGIPFARGELIDIDDALGVRIVDL------------
>UniRef50_Q9L9E0(33-118:123) BscQ n=1 Tax=Bordetella bronchiseptica RepID=Q9L9E0_BORBR   E=3e-08 s/c=0.69 id=31% cov=49%
-----------------------------------------------------------IPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPiADGPVMVRANGLLLGSGRLVDIDGRIGVVLQSV------------
>UniRef50_C2KZ05(279-354:395) Flagellar motor switch protein FliM n=1 Tax=Oribacterium sinus F0268 RepID=C2KZ05_9FIRM  E=4e-08 s/c=0.78 id=26% cov=51%
-------------------------------------------------------------------LGVVKLDIEDLYHLKVGDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDrIIQKDDKaMEALS-
>UniRef50_C7E4T5(225-291:305) Type III secretion protein n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=C7E4T5_ERWST  E=8e-08 s/c=0.87 id=31% cov=39%
-----------------------------------------------------------LPVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELV-------------------------
>UniRef50_Q1MQY5(289-353:360) Putative translocation protein in type III secretion n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQY5_LAWIP  E=2e-07 s/c=0.88 id=22% cov=47%
-------------------------------------------------------------VPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTIGTGVLMNFNGVIGIRILE-------------
>UniRef50_Q1IR54(35-108:109) Surface presentation of antigens (SPOA) protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR54_ACIBL  E=2e-07 s/c=0.76 id=36% cov=47%
--------------------------------------------------------------TVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDLPLRVNGALLAWSEFEVVDNRYGVRLTEL------------
>UniRef50_C1F992(10-115:116) Putative flagellar protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F992_ACIC5  E=5e-07 s/c=0.53 id=25% cov=47%
------------------------------------------------------------PLRLEIRLPIRGLRVKDVLALRKGAIFETQWPADEDIPGDCGGQQLVWAEFEVIDKKLAVRVT--------------
>UniRef50_Q11LL7(206-296:311) Surface presentation of antigens (SPOA) protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11LL7_MESSB  E=6e-07 s/c=0.61 id=22% cov=46%
------------------------------------------------------------TVQVTATIPLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI---------------
>UniRef50_UPI0001C312B7(255-317:322) surface presentation of antigens (SPOA) protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312B7  E=1e-06 s/c=0.86 id=25% cov=47%
-------------------------------------------------------------VTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAEDVPIHHAQPGRSGARRAVQIVD-------------
>UniRef50_A4ENM8(179-293:364) Possible flagellar switch protein FliM n=2 Tax=Rhodobacteraceae RepID=A4ENM8_9RHOB  E=1e-06 s/c=0.47 id=21% cov=67%
-------------------------------PVVQHAPEPETTPETFFDWDSDFqDRVSDAPARLDALLHRFPISLATAQGLQVGSVLPLPGCTVNSVRLLSpDGHEVAQAKLGQIGGYRAVRL---------------
>UniRef50_B1K3A5(189-281:290) Surface presentation of antigens (SPOA) protein n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3A5_BURCC  E=2e-06 s/c=0.58 id=29% cov=57%
--------GDVEFALDDMWLDHL---------------FARLDAQHLRPAPDSAQANVSIPVTISVHVLSKNMRLDELLRMRPGDV--LPVRLPETVDVLVN-----------------------------------
>UniRef50_Q57511(250-333:352) Flagellar motor switch protein fliM n=33 Tax=Spirochaetales RepID=FLIM_BORBU  E=2e-06 s/c=0.64 id=23% cov=45%
---------------------------------------------------------------LVAEIGEVKLKVREILSLDKGDVLNLESSlINKDLTLKVGTKEKFKCRMGLMGNKVSVQITE-------------
>UniRef50_A9DR47(190-303:315) Flagellar motor switch protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DR47_9RHOB  E=2e-06 s/c=0.47 id=23% cov=41%
-----------------------------------------------SNARKDMnNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVGMVN-----------------------------------
>UniRef50_D2TZV8(128-233:234) Type III secretion inner membrane protein YscQ,SpaO n=1 Tax=Arsenophonus nasoniae RepID=D2TZV8_9ENTR  E=3e-06 s/c=0.50 id=26% cov=23%
----------------------------------------------------------------------------------------------------INGQIFAKGELIQVGEQLAVELHTLLSTEQ-------
>UniRef50_C9NP58(37-102:106) Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NP58_9VIBR  E=4e-06 s/c=0.80 id=33% cov=47%
-----------------------------------------------------------ITVNLGLEIGRVRLPLSEWAQVGPGSVLMLSGVGVGEAYLTDAEGVVAYGELVDVAGVMGFKI---------------
>UniRef50_Q7UNV1(281-367:428) Flagellar motor switch protein fliM n=1 Tax=Rhodopirellula baltica RepID=Q7UNV1_RHOBA  E=4e-06 s/c=0.60 id=24% cov=33%
------------------------------------------------------------PVDVVVTLARSKIRTSDLLDLNVGDIITTEQAASSALELSVQDV---------------------------------
>UniRef50_A9HHK3(282-371:395) Flagellar motor switch protein FliM n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HHK3_GLUDA  E=5e-06 s/c=0.58 id=17% cov=30%
--------------------------------------------------------ILETDIQVSAVFEEKTILLSEVLGLRPGMLISFPHQNGTP-----------------------------------------
>UniRef50_Q28NV3(191-298:388) Putative uncharacterized protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28NV3_JANSC  E=6e-06 s/c=0.48 id=28% cov=47%
------------------------------------------------------------PMALDAVLMRTIMPLGKVEDLAQGDLVPFDHNDLSAISLEDEiGHVFARGALGQVSGRRAVRFGD-------------
>UniRef50_D1BCL9(195-309:315) Flagellar motor switch protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCL9_SANKS  E=6e-06 s/c=0.45 id=27% cov=37%
-----------------------------------------------------------VPVDVHVRMRPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHG----------------------------
>UniRef50_Q4JMS1(221-314:321) Predicted flagellar motor switch protein n=2 Tax=Bacteria RepID=Q4JMS1_9BACT  E=7e-06 s/c=0.55 id=22% cov=33%
--------------------------------------------------------VLNIPLPVTARLGQPVVSMYNLINMQVGDTFPI--TIGEGVEVRID-----------------------------------
>UniRef50_B2V6S5(254-317:322) Flagellar motor switch protein FliM n=2 Tax=Sulfurihydrogenibium RepID=B2V6S5_SULSY  E=3e-05 s/c=0.77 id=23% cov=45%
------------------------------------------------------------------ELDKFSVLVKEFLNYDVGTEIILNKKQSEELDLKVEDKVKFKASLGKLDKKFAAMITKVI-----------
>UniRef50_Q0C4V9(244-311:325) SPOA domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4V9_HYPNA  E=6e-05 s/c=0.72 id=25% cov=47%
-----------------------------------------------------------LTVLMTARVARVEMPISRLTSLRPGVTLLLGVPADQPVELLSGgldGDVAAEAQIGRKGNRMALRIS--------------
>UniRef50_A6X6R4(186-308:317) Surface presentation of antigens (SPOA) protein n=30 Tax=Brucellaceae RepID=A6X6R4_OCHA4  E=6e-05 s/c=0.39 id=28% cov=21%
-------------------------------------------------------------IELEAFIQQGSMTLDALSMLEIGQVLKL------------------------------------------------
>UniRef50_A8AKJ3(189-279:294) Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A8AKJ3_CITK8  E=8e-05 s/c=0.53 id=24% cov=43%
----------------------------------------------------QIERLFDsLPLKLSGRLASLNLTVAQISDIKPGDIIPI--AINEPLPVFIGKEQIFEAAIV-------------------------
>UniRef50_Q0FKH8(222-285:396) Possible flagellar switch protein FliM n=3 Tax=Rhodobacteraceae RepID=Q0FKH8_9RHOB  E=0.0001 s/c=0.74 id=22% cov=47%
-----------------------------------------------------------LPVHMDAVLHRLVLPLSAAEKLQPGDLIPLPPEALDGVELLAGdGSGVAGGRLGQINGMRAVRL---------------
>UniRef50_D1B6B2(254-374:375) Flagellar motor switch protein FliN n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6B2_THEAS  E=3e-27 s/c=1.01 id=50% cov=80%
---------------------------STAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARGEVVVIDENFGVRVTEIVSRAERIRSM--
>UniRef50_A1WGY8(1-162:163) Flagellar motor switch protein FliN n=19 Tax=Proteobacteria RepID=A1WGY8_VEREI  E=4e-26 s/c=0.73 id=59% cov=88%
------------------WAEALKEQKRSDEPPAEGQQGGPLSGEPVRPPLagaasgasavnggeqviNDINRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSR
>UniRef50_A6TRP4(254-393:393) CheC, inhibitor of MCP methylation n=11 Tax=Clostridia RepID=A6TRP4_ALKMQ  E=2e-25 s/c=0.83 id=38% cov=99%
-SEENRITQEKSNQQPHLSDhDAPVQQRQQPSlenskINVQPVQFQSFDQQSNRGLPENIALIQDVPLSVTVELGRTVKKISEVLEFGPGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRLSKI--
>UniRef50_B9PA59(196-284:284) Predicted protein n=2 Tax=cellular organisms RepID=B9PA59_POPTR   E=3e-24 s/c=1.26 id=56% cov=65%
-----------------------------------------------SEPPESIDFLLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVNDKYGVRLTDIVSPIERIKSL--
>UniRef50_B4U6V5(22-147:149) Flagellar motor switch protein FliN n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6V5_HYDS0  E=2e-23 s/c=0.87 id=42% cov=92%
------PTPQNDEDLMKLWEEAIQAQAQTE--SSAENQQAQATTQDIS---KDLQRILDIPLSITVVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEIIEKEERVKSLA-
>UniRef50_C2ED81(306-409:409) Flagellar motor switch protein FliY n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2ED81_9LACO  E=5e-21 s/c=0.97 id=52% cov=60%
----------------------------------------------------NLDLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVINDNFGVRITNILSQSQRIN----
>UniRef50_A8RWD0(239-359:368) Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8RWD0_9CLOT  E=9e-21 s/c=0.83 id=34% cov=85%
-----------TGGGQSPADAGTQKSAYSGAVRGTTASGGRFMGMPGSTLQNqsmngNLSLIMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVVVIDDNFGVRISEIV-----------
>UniRef50_D0MGA9(186-290:293) Flagellar motor switch protein FliN n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA9_RHOM4  E=4e-19 s/c=0.91 id=44% cov=64%
------------------------------------------------GVKGNLELLADVELEIVVELGRRRLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLVTGSRQREK---
>UniRef50_C6NYG7(6-116:120) Flagellar motor switch protein FliN n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG7_9GAMM  E=3e-17 s/c=0.81 id=46% cov=57%
-----------------------------------------------------VDLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTIYINGEIFAYGEAVLVNqERFGVRLTALVNKED-------
>UniRef50_B6QZA8(11-111:111) Flagellar motor switch protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QZA8_9RHOB  E=2e-16 s/c=0.86 id=46% cov=55%
---------------------------------------------------EDLEAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIARGEVVLVEDKLGVTMTEII-----------
>UniRef50_B8EL08(2-105:110) Flagellar motor switch protein FliN n=2 Tax=Beijerinckiaceae RepID=B8EL08_METSB  E=2e-16 s/c=0.83 id=44% cov=57%
---------------------------------------------------RNLETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGEIVVVEDdnsRFGVSLTEIVGP---------
>UniRef50_A6CER1(95-225:226) Flagellar motor switch protein fliN n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CER1_9PLAN  E=1e-15 s/c=0.64 id=45% cov=57%
----------------------------------------------------KLSSLQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLNDNFCVRVAEIISPE--------
>UniRef50_Q1D9K8(353-467:467) Type III secretion system apparatus protein YscQ/HrcQ n=2 Tax=Cystobacterineae RepID=Q1D9K8_MYXXD  E=1e-15 s/c=0.73 id=28% cov=85%
------------GSADEASAEPGDEEEDFTNPELDVPPELEGAALDDVSKPDGSDLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVELEGQLGVRIITLAS----------
>UniRef50_A8EW52(199-288:289) Flagellar motor switch protein FliY n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW52_ARCB4  E=3e-15 s/c=0.92 id=38% cov=59%
----------------------------------------------VTPTSKNLELLYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRII-----------
>UniRef50_Q30RD7(25-109:111) Surface presentation of antigens (SPOA) protein n=15 Tax=Epsilonproteobacteria RepID=Q30RD7_SULDN  E=1e-14 s/c=0.95 id=30% cov=60%
--------------------------------------------------------LLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILGRGEVMVYEKNLAIRINEVLDSSAVLYHLSK
>UniRef50_B3RAD9(283-392:399) SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO family n=1 Tax=Cupriavidus taiwanensis RepID=B3RAD9_CUPTR  E=3e-14 s/c=0.72 id=20% cov=72%
-------------------SNGAHMEEQDPARQSQPIPHPDAAQPP-------LSRLDQLEVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLkQSEVRIVANGNRIGTGTLIAVGNRLGVRIT--------------
>UniRef50_A7GNF7(438-552:554) CheC, inhibitor of MCP methylation n=70 Tax=Bacillales RepID=A7GNF7_BACCN  E=3e-13 s/c=0.66 id=24% cov=77%
-------------------EASIKEENVEEIPEPAVEPIELLEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSLHENDAVVLDEEVDEPIRIYVNNVLVAYGELVNVDGFFGVKVT--------------
>UniRef50_B8CYQ6(240-324:334) Flagellar motor switch protein FliM n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYQ6_HALOH  E=3e-13 s/c=0.90 id=37% cov=50%
------------------------------------------------------------PLEVIAEVGKTQLTVTDLLYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS----------
>UniRef50_Q2NR65(229-330:338) Type III secretion apparatus SpaO n=2 Tax=Sodalis glossinidius RepID=Q2NR65_SODGM  E=4e-13 s/c=0.74 id=28% cov=75%
-------------------AAAVHPKVRDGLAAAAPTPTGRLALGDDTAA----DPLANLPLTLEFILQRRYLSLGEIQQFRQGKVLELDPEGEKHIEIRANGHLLALGELVQLEDRLGVELMEL------------
>UniRef50_B5Y7E9(235-326:326) Flagellar motor switch protein FliM n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7E9_COPPD  E=2e-11 s/c=0.76 id=33% cov=42%
-----------------------------------------------------MEVIEDITVEVSAVLGEASVGIGEILKWNVGDVIELSRRSDEEVDLLVEGNLFAKG----------------------------
>UniRef50_B0THB4(240-319:331) Flagellar motor switch protein flim n=5 Tax=Clostridiales RepID=B0THB4_HELMI  E=9e-11 s/c=0.85 id=37% cov=46%
-------------------------------------------------------------VPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELEVLIGQRVKYLARPGLSGSKLGIQIT--------------
>UniRef50_B5YIZ4(252-320:322) Flagellar motor switch protein FliM n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIZ4_THEYD  E=1e-10 s/c=0.98 id=28% cov=47%
------------------------------------------------------------PVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKLGTFKGNYAIKII--------------
>UniRef50_A3U1I7(222-311:317) Flagellar motor switch protein FliM n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U1I7_9RHOB  E=2e-10 s/c=0.74 id=23% cov=66%
-------------------------------------------GGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDLGIEVDQPVSLICSGHEMYMAQTGKrKNGRMALKITEQLKDEEEM-----
>UniRef50_B2Q5J4(181-300:308) Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q5J4_PROST  E=2e-10 s/c=0.55 id=32% cov=47%
-----------------------------------------------------------MTIKLTFVLGQTEITLNELADIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGesDELGLEIT--------------
>UniRef50_UPI00019F17D0(159-248:250) translocation protein in type III secretion n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F17D0  E=3e-10 s/c=0.74 id=34% cov=47%
----------------------------------------------------------DVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTPAVRI---------------
>UniRef50_Q3SBB5(231-309:315) EpaO n=13 Tax=Escherichia RepID=Q3SBB5_ECOLX   E=4e-10 s/c=0.84 id=35% cov=47%
----------------------------------------------------------DLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIEIRVNGALTGYGELVEVDDKLGVEI---------------
>UniRef50_Q0FMH0(218-305:313) Flagellar motor switch protein fliM n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FMH0_9RHOB  E=5e-10 s/c=0.74 id=24% cov=37%
-------------------------------------------------------------VPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAEV--------------------------
>UniRef50_A1UTV5(207-320:323) Flagellar motor switch protein FliM n=1 Tax=Bartonella bacilliformis KC583 RepID=A1UTV5_BARBK  E=7e-10 s/c=0.57 id=25% cov=47%
-----------------------------------------------------------------------SMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGKIGKNFSIRVTDPIDEEkEMINEL--
>UniRef50_A6TKX0(259-331:331) Flagellar motor switch protein FliM n=4 Tax=Clostridia RepID=A6TKX0_ALKMQ  E=8e-10 s/c=0.89 id=32% cov=47%
-------------------------------------------------------------VDITAQLGSTCVTVKDFLELQMGDVIMLDNPVDKELQILVGDKIRYRGLPGTSKNKLAVKVTGI------------
>UniRef50_Q1Q6R4(248-316:318) Similar to flagellar motor switch n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6R4_9BACT  E=1e-09 s/c=0.94 id=27% cov=49%
-----------------------------------------------------------VPLLVNTILGTTQLSFNELINLRVGDVISLDNKITDHLSLEIDEVPKFFGTPGVSGKKLAIKITSV------------
>UniRef50_Q2NX04(213-327:340) Flagellar motor switch protein FliM n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NX04_SODGM  E=2e-09 s/c=0.55 id=14% cov=82%
------------GAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARqLQGTELELVARFADLPLCLSRVMELRRGDILPIPRP--DRLTACVDGVPVFLGNYGSLNGRYALRVEHVI-----------
>UniRef50_B0MPD5(223-329:331) Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPD5_9FIRM  E=2e-09 s/c=0.59 id=18% cov=48%
-------------------------------------------------------------LTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDNIL-----------
>UniRef50_A4J3G9(206-331:333) CheC, inhibitor of MCP methylation n=2 Tax=Desulfotomaculum RepID=A4J3G9_DESRM  E=2e-09 s/c=0.50 id=26% cov=82%
-----------------LMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLGKIRCTAGDLAKLKKGDTLAIP-FSSQQIKLLVGGIPVALGELQTHAEETKIKISRLYQKS--------
>UniRef50_B1Z5P0(273-367:374) Type III secretion system apparatus protein YscQ/HrcQ n=4 Tax=Burkholderia cepacia complex RepID=B1Z5P0_BURA4  E=3e-09 s/c=0.66 id=33% cov=46%
----------------------------------------------------------DLPLKL--EIDTVSMPVAQLSALRAGYVLELPTALPDArVRLVTYGQTIGFGELVSVGDHLGVRL---------------
>UniRef50_C2KTP4(195-301:307) Flagellar motor switch protein FliM n=3 Tax=Mobiluncus RepID=C2KTP4_9ACTO  E=4e-09 s/c=0.59 id=18% cov=67%
-----------------MPVAMITDAIHKGDANADTRSEEQKREAAIM-RQRLVDNLEEIPVEVAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEA----------------------------
>UniRef50_C4U6D3(184-258:269) Secretion system apparatus protein ssaQ n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4U6D3_YERAL  E=1e-08 s/c=0.81 id=29% cov=53%
----------------------------------------------------------DLPQILLVEVGQVDISLGALRALRVGDLLPVAAQFGGEVKLRLNGRVLGAGELVGCGDSFLVRINRWyLSPAE-------
>UniRef50_Q3A5D9(210-323:331) Flagellar biosynthesis protein, component of motor switch n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5D9_PELCD  E=2e-08 s/c=0.53 id=21% cov=31%
-------------------------------------------------------------VDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQVRAAG----------------------------------
>UniRef50_O67283(101-182:182) Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67283_AQUAE  E=6e-08 s/c=0.72 id=22% cov=54%
-----------------------------------------------------LSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGKTPQEEVEVLVQGRLKFLGILGEKNGKRAVKISKIL-----------
>UniRef50_B6QWX3(243-343:350) Surface presentation of antigens protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QWX3_9RHOB  E=9e-08 s/c=0.57 id=29% cov=38%
------------------------------------------------------------------------ISIAELESWAAGTLVNIDVPAlneETPVYVRAAGKRIAKGHLVQIDERVALRIS--------------
>UniRef50_Q1NVK6(239-327:330) Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM n=2 Tax=Deltaproteobacteria RepID=Q1NVK6_9DELT  E=2e-07 s/c=0.64 id=28% cov=31%
-------------------------------------------------------------VDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAG----------------------------------
>UniRef50_A6W8L0(200-311:314) Flagellar motor switch protein FliM n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8L0_KINRD  E=3e-07 s/c=0.50 id=30% cov=51%
-----------------------------------------------------------IPVEVSVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVVSSDAHVASAVAGSRGAKLACLI--VPTPEE-------
>UniRef50_Q6AJS9(260-323:323) Related to flagellar motor switch protein (FliM) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJS9_DESPS  E=1e-06 s/c=0.85 id=25% cov=29%
--------------------------------------------------------------DITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLKVLV------------------------------------
>UniRef50_A6DWS9(207-325:325) Flagellar switch protein FliM n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWS9_9RHOB  E=2e-06 s/c=0.45 id=31% cov=26%
--------------------------------------------------------VMAVPLNVTARLAEPNVPISALTGLRPGRVVPVD-----------------------------------------------
>UniRef50_B1I5G4(280-335:369) CheC, inhibitor of MCP methylation n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5G4_DESAP  E=4e-06 s/c=0.94 id=49% cov=28%
-------------------------------------------------ALEKLDLILDLPLKVTVILGRSKRPIKDVLGLTPGSII--------------------------------------------------
>UniRef50_Q1NCV0(22-92:93) Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCV0_9SPHN  E=4e-06 s/c=0.74 id=36% cov=50%
----------------------------------------------------------DFSVQLRFELDQTDVPLSRLQAVQQGGVLPLqDRDGALPVRIIAGGRAIAAGQIVSVGDSYGVLIETVL-----------
>UniRef50_C5EFH3(227-294:296) Flagellar motor switch protein FliM n=3 Tax=Clostridiales RepID=C5EFH3_9FIRM  E=5e-06 s/c=0.77 id=23% cov=22%
---------------------------------------------------------------------------QDILQLTPGDVIPLNKKVDSGISIYVEDV---------------------------------
>UniRef50_A3VIM0(221-299:378) Possible flagellar switch protein FliM n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VIM0_9RHOB  E=8e-06 s/c=0.65 id=21% cov=24%
----------------------------------------------------------------------------------------------------INGRTVKHGRLGMSGGHRAIRIGAVAEAEPQM-----
>UniRef50_A6Q2L2(224-322:326) Flagellar motor switch protein FliM n=4 Tax=Bacteria RepID=A6Q2L2_NITSB  E=2e-05 s/c=0.51 id=18% cov=50%
-------------------------------------------------------ILLQTNVEVALELPKQTYLMRDVLQWKEGMELILDIEKEEDAYLRISDKYKFRCKVGKIKEKYAALL---------------
>UniRef50_Q1YV70(261-328:330) Flagellar motor switch protein FliM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV70_9GAMM  E=6e-05 s/c=0.72 id=22% cov=50%
----------------------------------------------------------DAELEVTVELGEIETTLSKFEAMSEGDIVYFSKS--EHARVYVNSVPVFDADVGANGSQMAARIIKPLAP---------
>UniRef50_A6XSQ6(3-63:71) Conserved domain protein n=13 Tax=Gammaproteobacteria RepID=A6XSQ6_VIBCH  E=0.0002 s/c=0.77 id=25% cov=44%
-------------------------------------------------------------VALDVVIAHCNLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLIKVDDQYAV-----------------
>UniRef50_A0Z384(251-318:323) Flagellar motor switch protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z384_9GAMM  E=0.0002 s/c=0.69 id=26% cov=36%
-------------------------------------------------------------------------SLRNLLAFKVGTVIPIDEPQT--AQLMVEGRGIARGKYGAHDSSRAVQITD-------------
>UniRef50_A8ERA3(239-332:368) Flagellar motor switch protein FliM n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERA3_ARCB4  E=0.0007 s/c=0.48 id=23% cov=26%
----------------------------------------------------------------------TELTTAEILNLKENDIIVFNKNAsSSSATVYINKK---------------------------------
