Phyre 2 Results for P15070

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Email | l.a.kelley@imperial.ac.uk
Description | P15070
Date | Thu Jan 5 11:34:34 GMT 2012
Unique Job ID | f48f842527985c7d

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1o6aa_
Top template information
Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA)
Confidence and coverage
Confidence: | 99.9% | Coverage: | 63%
86 residues ( 63% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | D | M | N | N | P | A | D | D | N | N | G | A | M | D | D | L | W | A | E | A | L | S | E | Q | K | S | T | S | S | K | S | A | A | E | T | V | F | Q | Q | F | G | G | G | D | V | S | G | T | L | Q | D | I | D | L | I | M | D | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | P | V | K | L | T | V | E | L | G | R | T | R | M | T | I | K | E | L | L | R | L | T | Q | G | S | V | V | A | L | D | G | L | A | G | E | P | L | D | I | L | I | N | G | Y | L | I | A | Q | G | E | V | V | V | V | A | D | K | Y | G | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | .
Sequence |  | R | I | T | D | I | I | T | P | S | E | R | M | R | R | L | S | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1o6aa_ |

### PDB 1o6a chain A

Region: 52 - 137
Aligned: 86
Modelled: 86
Confidence: 99.9%
Identity: 55%
Fold: Surface presentation of antigens (SPOA)
Superfamily: Surface presentation of antigens (SPOA)
Family: Surface presentation of antigens (SPOA)

Phyre2
2 |
| d1o9ya_ |

### PDB 1o9y chain A

Region: 57 - 126
Aligned: 70
Modelled: 70
Confidence: 99.8%
Identity: 27%
Fold: Surface presentation of antigens (SPOA)
Superfamily: Surface presentation of antigens (SPOA)
Family: Surface presentation of antigens (SPOA)

Phyre2
3 |
| c2k5fA_ |

### PDB 2k5f chain A

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 58.6%
Identity: 29%
PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron transport protein a;
PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121

Phyre2
4 |
| d2gcxa1 |

### PDB 2gcx chain A domain 1

Region: 79 - 109
Aligned: 31
Modelled: 31
Confidence: 56.8%
Identity: 23%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
5 |
| c2k5lA_ |

### PDB 2k5l chain A

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 46.5%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:feoa;
PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17

Phyre2
6 |
| c2k4yA_ |

### PDB 2k4y chain A

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 46.1%
Identity: 23%
PDB header:metal transport
Chain: A: PDB Molecule:feoa-like protein;
PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178

Phyre2
7 |
| c3mhxB_ |

### PDB 3mhx chain B

Region: 79 - 109
Aligned: 30
Modelled: 31
Confidence: 32.6%
Identity: 27%
PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor

Phyre2
8 |
| c2k5iA_ |

### PDB 2k5i chain A

Region: 79 - 109
Aligned: 31
Modelled: 30
Confidence: 32.1%
Identity: 19%
PDB header:metal transport
Chain: A: PDB Molecule:iron transport protein;
PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131

Phyre2
9 |
| c3gt2A_ |

### PDB 3gt2 chain A

Region: 80 - 114
Aligned: 35
Modelled: 35
Confidence: 29.5%
Identity: 17%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c

Phyre2
10 |
| d3bwud1 |

### PDB 3bwu chain D domain 1

Region: 96 - 129
Aligned: 34
Modelled: 34
Confidence: 26.5%
Identity: 21%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2
11 |
| d1m5q1_ |

### PDB 1m5q chain 1

Region: 88 - 125
Aligned: 38
Modelled: 38
Confidence: 26.3%
Identity: 13%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Sm motif of small nuclear ribonucleoproteins, SNRNP

Phyre2
12 |
| d1wmxb_ |

### PDB 1wmx chain B

Region: 70 - 106
Aligned: 37
Modelled: 37
Confidence: 24.4%
Identity: 11%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)

Phyre2
13 |
| d1zdva1 |

### PDB 1zdv chain A domain 1

Region: 96 - 111
Aligned: 16
Modelled: 16
Confidence: 24.0%
Identity: 31%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2
14 |
| c3ddyA_ |

### PDB 3ddy chain A

Region: 78 - 137
Aligned: 54
Modelled: 60
Confidence: 23.5%
Identity: 19%
PDB header:luminescent protein
Chain: A: PDB Molecule:lumazine protein;
PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria

Phyre2
15 |
| d2h3ja1 |

### PDB 2h3j chain A domain 1

Region: 79 - 107
Aligned: 29
Modelled: 29
Confidence: 23.3%
Identity: 17%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
16 |
| c2glvA_ |

### PDB 2glv chain A

Region: 82 - 114
Aligned: 33
Modelled: 33
Confidence: 22.0%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-acyl carrier protein
PDBTitle: crystal structure of (3r)-hydroxyacyl-acyl carrier protein2 dehydratase(fabz) mutant(y100a) from helicobacter pylori

Phyre2
17 |
| c2e63A_ |

### PDB 2e63 chain A

Region: 78 - 107
Aligned: 30
Modelled: 30
Confidence: 20.8%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1787 protein;
PDBTitle: solution structure of the neuz domain in kiaa1787 protein

Phyre2
18 |
| c2fg0B_ |

### PDB 2fg0 chain B

Region: 80 - 125
Aligned: 45
Modelled: 46
Confidence: 20.3%
Identity: 11%
PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution

Phyre2
19 |
| d2evra2 |

### PDB 2evr chain A domain 2

Region: 80 - 125
Aligned: 45
Modelled: 46
Confidence: 20.1%
Identity: 11%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: NlpC/P60

Phyre2
20 |
| c3e19D_ |

### PDB 3e19 chain D

Region: 79 - 109
Aligned: 31
Modelled: 31
Confidence: 19.2%
Identity: 26%
PDB header:transcription regulator, metal binding p
Chain: D: PDB Molecule:feoa;
PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1o6aa_ |
|  | 99.9 | 55 | Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA)
2 | d1o9ya_ |
|  | 99.8 | 27 | Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA)
3 | c2k5fA_ |
|  | 58.6 | 29 | PDB header:metal transport Chain: A: PDB Molecule:ferrous iron transport protein a; PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121
4 | d2gcxa1 |
|  | 56.8 | 23 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
5 | c2k5lA_ |
|  | 46.5 | 26 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17
6 | c2k4yA_ |
|  | 46.1 | 23 | PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178
7 | c3mhxB_ |
|  | 32.6 | 27 | PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
8 | c2k5iA_ |
|  | 32.1 | 19 | PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131
9 | c3gt2A_ |
|  | 29.5 | 17 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c
10 | d3bwud1 |
|  | 26.5 | 21 | Fold:FimD N-terminal domain-like Superfamily:FimD N-terminal domain-like Family:Usher N-domain
11 | d1m5q1_ |
|  | 26.3 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
12 | d1wmxb_ |
|  | 24.4 | 11 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
13 | d1zdva1 |
|  | 24.0 | 31 | Fold:FimD N-terminal domain-like Superfamily:FimD N-terminal domain-like Family:Usher N-domain
14 | c3ddyA_ |
|  | 23.5 | 19 | PDB header:luminescent protein Chain: A: PDB Molecule:lumazine protein; PDBTitle: structure of lumazine protein, an optical transponder of luminescent2 bacteria
15 | d2h3ja1 |
|  | 23.3 | 17 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
16 | c2glvA_ |
|  | 22.0 | 21 | PDB header:lyase Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-acyl carrier protein PDBTitle: crystal structure of (3r)-hydroxyacyl-acyl carrier protein2 dehydratase(fabz) mutant(y100a) from helicobacter pylori
17 | c2e63A_ |
|  | 20.8 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1787 protein; PDBTitle: solution structure of the neuz domain in kiaa1787 protein
18 | c2fg0B_ |
|  | 20.3 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
19 | d2evra2 |
|  | 20.1 | 11 | Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60
20 | c3e19D_ |
|  | 19.2 | 26 | PDB header:transcription regulator, metal binding p Chain: D: PDB Molecule:feoa; PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group
21 | d2isba1 |
| not modelled | 19.0 | 33 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:FumA C-terminal domain-like Family:FumA C-terminal domain-like
22 | c2kytA_ |
| not modelled | 17.9 | 7 | PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain
23 | d1zdxa1 |
| not modelled | 17.8 | 26 | Fold:FimD N-terminal domain-like Superfamily:FimD N-terminal domain-like Family:Usher N-domain
24 | c3pbiA_ |
| not modelled | 17.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
25 | c2xivA_ |
| not modelled | 15.9 | 19 | PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis
26 | c1i8dB_ |
| not modelled | 15.3 | 18 | PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of riboflavin synthase
27 | c3hruA_ |
| not modelled | 15.2 | 16 | PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+
28 | c3cw1D_ |
| not modelled | 14.9 | 16 | PDB header:splicing Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3; PDBTitle: crystal structure of human spliceosomal u1 snrnp
29 | c2gl0A_ |
| not modelled | 14.9 | 22 | PDB header:transferase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of pae2307 in complex with adenosine
30 | d1u1za_ |
| not modelled | 14.7 | 6 | Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:FabZ-like
31 | d1vgga_ |
| not modelled | 14.6 | 16 | Fold:Ta1353-like Superfamily:Ta1353-like Family:Ta1353-like
32 | c2d16B_ |
| not modelled | 14.3 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ph1918; PDBTitle: crystal structure of ph1918 protein from pyrococcus horikoshii ot3
33 | c2ekmC_ |
| not modelled | 14.2 | 23 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein st1511; PDBTitle: structure of st1219 protein from sulfolobus tokodaii
34 | c3swnC_ |
| not modelled | 13.6 | 10 | PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
35 | d1i4k1_ |
| not modelled | 13.2 | 14 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
36 | d1vyua1 |
| not modelled | 12.6 | 6 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
37 | c3cw15_ |
| not modelled | 12.0 | 19 | PDB header:splicing Chain: 5: PDB Molecule:small nuclear ribonucleoprotein g; PDB Fragment:residues 1-215; PDBTitle: crystal structure of human spliceosomal u1 snrnp
38 | d2je8a4 |
| not modelled | 11.8 | 15 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain
39 | d1t0ha_ |
| not modelled | 11.7 | 12 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
40 | c2glwA_ |
| not modelled | 11.5 | 14 | PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
41 | d4fiva_ |
| not modelled | 10.9 | 27 | Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin)
42 | c2pn0D_ |
| not modelled | 10.6 | 31 | PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea
43 | d2as0a1 |
| not modelled | 10.6 | 23 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD)
44 | d1n9ra_ |
| not modelled | 10.3 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
45 | c1b34A_ |
| not modelled | 10.2 | 16 | PDB header:rna binding protein Chain: A: PDB Molecule:protein (small nuclear ribonucleoprotein sm d1); PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
46 | d1b34a_ |
| not modelled | 10.2 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
47 | c3a35B_ |
| not modelled | 9.9 | 17 | PDB header:luminescent protein Chain: B: PDB Molecule:lumazine protein; PDBTitle: crystal structure of lump complexed with riboflavin
48 | d2axwa1 |
| not modelled | 9.7 | 19 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
49 | d1d3ba_ |
| not modelled | 9.6 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
50 | c3d37A_ |
| not modelled | 9.5 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tail protein, 43 kda; PDBTitle: the crystal structure of the tail protein from neisseria meningitidis2 mc58
51 | d1t3la1 |
| not modelled | 9.2 | 12 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
52 | d2fwka1 |
| not modelled | 8.9 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
53 | d1eika_ |
| not modelled | 8.9 | 14 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
54 | c3f3bA_ |
| not modelled | 8.9 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage-like element pbsx protein xkdh; PDBTitle: structure of the phage-like element pbsx protein xkdh from2 bacillus subtilus. northeast structural genomics3 consortium target sr352.
55 | c1n9sH_ |
| not modelled | 8.6 | 13 | PDB header:translation Chain: H: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of yeast smf in spacegroup p43212
56 | c1t0jA_ |
| not modelled | 8.5 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
57 | d1hmja_ |
| not modelled | 8.4 | 16 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
58 | d1wmxa_ |
| not modelled | 8.1 | 8 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat)
59 | d1i8fa_ |
| not modelled | 8.1 | 11 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
60 | c3fcgB_ |
| not modelled | 8.1 | 27 | PDB header:membrane protein, protein transport Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
61 | c3swnA_ |
| not modelled | 7.7 | 18 | PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
62 | d1h641_ |
| not modelled | 7.6 | 8 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
63 | c1fx7C_ |
| not modelled | 7.5 | 6 | PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
64 | c1wruA_ |
| not modelled | 7.4 | 14 | PDB header:structural protein Chain: A: PDB Molecule:43 kda tail protein; PDBTitle: structure of central hub elucidated by x-ray analysis of gene product2 44; baseplate component of bacteriophage mu
65 | c3butA_ |
| not modelled | 7.3 | 38 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus
66 | d1dzfa2 |
| not modelled | 7.3 | 25 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
67 | d1d1na_ |
| not modelled | 7.1 | 26 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
68 | d1jz8a3 |
| not modelled | 6.8 | 17 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain
69 | c3h41A_ |
| not modelled | 6.7 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution
70 | c3h0gE_ |
| not modelled | 6.6 | 25 | PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe
71 | c2fwkB_ |
| not modelled | 6.4 | 14 | PDB header:dna binding protein Chain: B: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: crystal structure of cryptosporidium parvum u6 snrna-associated sm-2 like protein lsm5
72 | d2pw9a1 |
| not modelled | 6.4 | 25 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:FdhD/NarQ
73 | c2fvnA_ |
| not modelled | 6.3 | 19 | PDB header:cell adhesion Chain: A: PDB Molecule:protein afad; PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins
74 | d1n9sc_ |
| not modelled | 6.3 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
75 | c2dlpA_ |
| not modelled | 6.2 | 27 | PDB header:structural protein Chain: A: PDB Molecule:kiaa1783 protein; PDBTitle: solution structure of the sh3 domain of human kiaa17832 protein
76 | c3cw1Z_ |
| not modelled | 6.2 | 22 | PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp
77 | d1mgqa_ |
| not modelled | 6.2 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
78 | c2yueA_ |
| not modelled | 6.0 | 7 | PDB header:rna binding protein Chain: A: PDB Molecule:protein neuralized; PDBTitle: solution structure of the neuz (nhr) domain in neuralized2 from drosophila melanogaster
79 | c3swnT_ |
| not modelled | 6.0 | 11 | PDB header:rna binding protein Chain: T: PDB Molecule:u6 snrna-associated sm-like protein lsm6; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
80 | d1jbma_ |
| not modelled | 5.9 | 16 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
81 | d1o91a_ |
| not modelled | 5.7 | 17 | Fold:TNF-like Superfamily:TNF-like Family:TNF-like
82 | c1o91B_ |
| not modelled | 5.7 | 17 | PDB header:collagen Chain: B: PDB Molecule:collagen alpha 1(viii) chain; PDBTitle: crystal structure of a collagen viii nc1 domain trimer
83 | d1ljoa_ |
| not modelled | 5.6 | 13 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
84 | d1d3bb_ |
| not modelled | 5.6 | 8 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
85 | c3d6xA_ |
| not modelled | 5.5 | 27 | PDB header:lyase Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PDBTitle: crystal structure of campylobacter jejuni fabz
86 | d1p9ka_ |
| not modelled | 5.5 | 24 | Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like
87 | c3dzoA_ |
| not modelled | 5.3 | 16 | PDB header:transferase Chain: A: PDB Molecule:rhoptry kinase domain; PDBTitle: crystal structure of a rhoptry kinase from toxoplasma gondii
88 | d1yq2a3 |
| not modelled | 5.3 | 21 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain
89 | c3cnrA_ |
| not modelled | 5.2 | 23 | PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri
90 | c1zyiA_ |
| not modelled | 5.2 | 11 | PDB header:translation Chain: A: PDB Molecule:methylosome subunit picln; PDBTitle: solution structure of icln, a multifunctional protein2 involved in regulatory mechanisms as different as cell3 volume regulation and rna splicing
91 | d2cnda1 |
| not modelled | 5.2 | 33 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
92 | d2bmwa1 |
| not modelled | 5.0 | 33 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0