Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32689
DateThu Jan 5 11:50:13 GMT 2012
Unique Job IDe9c80fe6158140ce

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2k0lA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
Confidence and coverage
Confidence: 95.5% Coverage: 22%
152 residues ( 22% of your sequence) have been modelled with 95.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN
Secondary structure 
SS confidence 
Disorder  ??????
?????????????????
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL
Secondary structure 
SS confidence 
Disorder 
?
?
????
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
Secondary structure 
SS confidence 
Disorder 
??
?
?
????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ
Secondary structure 
SS confidence 
Disorder 
???????????????????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  HSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI
Secondary structure 
SS confidence 
Disorder  ??
?
?
??
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  KTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPQSTEQGWYIDK
Secondary structure 
SS confidence 
Disorder 
??
??
?
????????????????
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEV
Secondary structure 
SS confidence 
Disorder 
??
??
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGP
Secondary structure 
SS confidence 
Disorder 
???????????
?
?????
Disorder confidence 
 
   .........670.........680.........690........
Sequence  TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
Secondary structure 
SS confidence 
Disorder  ??
???????
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2k0l chain A

3D model

Region: 65 - 293
Aligned: 152
Modelled: 154
Confidence: 95.5%
Identity: 21%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 1p4t chain A

3D model

Region: 65 - 249
Aligned: 125
Modelled: 136
Confidence: 88.3%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1g90 chain A

3D model

Region: 65 - 252
Aligned: 131
Modelled: 139
Confidence: 85.6%
Identity: 19%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 3bry chain B

3D model

Region: 49 - 274
Aligned: 224
Modelled: 225
Confidence: 79.6%
Identity: 17%
PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux

Phyre2

PDB 1pho chain A

3D model

Region: 131 - 249
Aligned: 91
Modelled: 92
Confidence: 75.0%
Identity: 14%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Porin

Phyre2

PDB 3nb3 chain C

3D model

Region: 51 - 250
Aligned: 124
Modelled: 145
Confidence: 62.8%
Identity: 26%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 3dwo chain X

3D model

Region: 35 - 276
Aligned: 207
Modelled: 207
Confidence: 60.9%
Identity: 12%
PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue

Phyre2

PDB 3qra chain A

3D model

Region: 47 - 249
Aligned: 140
Modelled: 150
Confidence: 55.2%
Identity: 24%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 2jmm chain A

3D model

Region: 47 - 249
Aligned: 140
Modelled: 156
Confidence: 52.0%
Identity: 16%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 1t16 chain A

3D model

Region: 68 - 261
Aligned: 160
Modelled: 160
Confidence: 50.4%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Outer membrane protein transport protein

Phyre2

PDB 1qjp chain A

3D model

Region: 51 - 250
Aligned: 127
Modelled: 151
Confidence: 47.7%
Identity: 22%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2f1t chain B

3D model

Region: 35 - 249
Aligned: 155
Modelled: 157
Confidence: 46.3%
Identity: 19%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 2zfg chain A domain 1

3D model

Region: 137 - 249
Aligned: 85
Modelled: 93
Confidence: 40.5%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Porin

Phyre2

PDB 2x27 chain X

3D model

Region: 66 - 249
Aligned: 132
Modelled: 138
Confidence: 37.5%
Identity: 14%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 1ynj chain A domain 1

3D model

Region: 318 - 356
Aligned: 39
Modelled: 39
Confidence: 37.3%
Identity: 18%
Fold: DCoH-like
Superfamily: RBP11-like subunits of RNA polymerase
Family: RNA polymerase alpha subunit dimerisation domain

Phyre2

PDB 2jvf chain A

3D model

Region: 294 - 334
Aligned: 41
Modelled: 41
Confidence: 36.4%
Identity: 12%
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein

Phyre2

PDB 2lhf chain A

3D model

Region: 152 - 249
Aligned: 74
Modelled: 75
Confidence: 33.6%
Identity: 20%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles

Phyre2

PDB 1qys chain A

3D model

Region: 294 - 334
Aligned: 41
Modelled: 41
Confidence: 29.3%
Identity: 22%
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold

Phyre2

PDB 3brz chain A

3D model

Region: 65 - 275
Aligned: 185
Modelled: 187
Confidence: 28.0%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx

Phyre2

PDB 2e0g chain A

3D model

Region: 304 - 373
Aligned: 70
Modelled: 70
Confidence: 25.9%
Identity: 11%
PDB header:replication
Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: dnaa n-terminal domain

Phyre2
1
c2k0lA_
2
d1p4ta_
3
d1g90a_
4
c3bryB_
5
d1phoa_
6
c3nb3C_
7
c3dwoX_
8
c3qraA_
9
c2jmmA_
10
d1t16a_
11
d1qjpa_
12
c2f1tB_
13
d2zfga1
14
c2x27X_
15
d1ynja1
16
c2jvfA_
17
c2lhfA_
18
c1qysA_
19
c3brzA_
20
c2e0gA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
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53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k0lA_
95.5 21 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
2d1p4ta_
88.3 18 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
3d1g90a_
85.6 19 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
4c3bryB_
79.6 17 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
5d1phoa_
75.0 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
6c3nb3C_
62.8 26 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
7c3dwoX_
60.9 12 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
8c3qraA_
55.2 24 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
9c2jmmA_
52.0 16 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
10d1t16a_
50.4 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
11d1qjpa_
47.7 22 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
12c2f1tB_
46.3 19 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
13d2zfga1
40.5 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
14c2x27X_
37.5 14 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
15d1ynja1
37.3 18 Fold:DCoH-like
Superfamily:RBP11-like subunits of RNA polymerase
Family:RNA polymerase alpha subunit dimerisation domain
16c2jvfA_
36.4 12 PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
17c2lhfA_
33.6 20 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
18c1qysA_
29.3 22 PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
19c3brzA_
28.0 13 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
20c2e0gA_
25.9 11 PDB header:replication
Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: dnaa n-terminal domain
21c3a2rX_
not modelled 25.5 14 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
22d2fgqx1
not modelled 21.5 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
23c2i9zB_
not modelled 20.2 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative septation protein spovg;
PDBTitle: structural genomics, the crystal structure of full-length spovg from2 staphylococcus epidermidis atcc 12228
24d2i9xa1
not modelled 20.2 22 Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
25d1uynx_
not modelled 15.9 11 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
26d1bdfa1
not modelled 14.0 33 Fold:DCoH-like
Superfamily:RBP11-like subunits of RNA polymerase
Family:RNA polymerase alpha subunit dimerisation domain
27d1umha_
not modelled 10.3 25 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:F-box associated region, FBA
28d1u69a_
not modelled 10.3 23 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:3-demethylubiquinone-9 3-methyltransferase
29d1kpta_
not modelled 9.5 35 Fold:Yeast killer toxins
Superfamily:Yeast killer toxins
Family:Virally encoded KP4 toxin
30c2gjhA_
not modelled 9.1 30 PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
31d2gufa1
not modelled 9.0 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
32c2x4mD_
not modelled 8.6 19 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
33c3qwnC_
not modelled 8.5 23 PDB header:antitoxin
Chain: C: PDB Molecule:hypothetical nigd-like protein;
PDBTitle: crystal structure of a hypothetical nigd-like protein (baccac_03262)2 from bacteroides caccae at 2.42 a resolution
34d1tdha3
not modelled 8.0 20 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
35c2djmA_
not modelled 7.7 16 PDB header:sugar binding protein
Chain: A: PDB Molecule:glucoamylase a;
PDBTitle: solution structure of n-terminal starch-binding domain of2 glucoamylase from rhizopus oryzae
36c3qv0A_
not modelled 7.7 16 PDB header:protein binding
Chain: A: PDB Molecule:mitochondrial acidic protein mam33;
PDBTitle: crystal structure of saccharomyces cerevisiae mam33
37d1smya1
not modelled 7.7 20 Fold:DCoH-like
Superfamily:RBP11-like subunits of RNA polymerase
Family:RNA polymerase alpha subunit dimerisation domain
38d1f2va_
not modelled 7.6 18 Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
39d1txka2
not modelled 7.0 18 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
40d1kkea2
not modelled 7.0 20 Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Reovirus attachment protein sigma 1 head domain
41d1smyc_
not modelled 6.9 32 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta
42c3e7dC_
not modelled 6.9 18 PDB header:isomerase
Chain: C: PDB Molecule:cobh, precorrin-8x methylmutase;
PDBTitle: crystal structure of precorrin-8x methyl mutase cbic/cobh from2 brucella melitensis
43c2r28D_
not modelled 6.9 18 PDB header:metal binding protein/hydrolase
Chain: D: PDB Molecule:serine/threonine-protein phosphatase 2b
PDBTitle: the complex structure of calmodulin bound to a calcineurin2 peptide
44c1txkA_
not modelled 6.7 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
45c2jziB_
not modelled 6.7 20 PDB header:metal binding protein
Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2b
PDBTitle: structure of calmodulin complexed with the calmodulin2 binding domain of calcineurin
46c3cjtP_
not modelled 6.5 23 PDB header:transferase/ribosomal protein
Chain: P: PDB Molecule:50s ribosomal protein l11;
PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11
47d1kk1a2
not modelled 6.5 25 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
48c2rqeA_
not modelled 6.4 75 PDB header:sugar binding protein
Chain: A: PDB Molecule:beta-1,3-glucan-binding protein;
PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition
49c3fhhA_
not modelled 6.4 6 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane heme receptor shua;
PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae
50c2afvB_
not modelled 6.3 24 PDB header:isomerase
Chain: B: PDB Molecule:cobalamin biosynthesis precorrin isomerase;
PDBTitle: the crystal structure of putative precorrin isomerase cbic2 in cobalamin biosynthesis
51c1uv7A_
not modelled 6.2 10 PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae
52d1uv7a_
not modelled 6.2 10 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:General secretion pathway protein M, EpsM
Family:General secretion pathway protein M, EpsM
53d2cura2
not modelled 6.2 55 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
54c3ie4A_
not modelled 6.2 63 PDB header:immune system
Chain: A: PDB Molecule:gram-negative binding protein 3;
PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor
55d2jnaa1
not modelled 6.0 24 Fold:Dodecin subunit-like
Superfamily:YdgH-like
Family:YdgH-like
56c3iydC_
not modelled 5.7 27 PDB header:transcription/dna
Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
57c2khaA_
not modelled 5.5 44 PDB header:sugar binding protein
Chain: A: PDB Molecule:beta-1,3-glucan-binding protein;
PDBTitle: solution structure of a pathogen recognition domain from a2 lepidopteran insect, plodia interpunctella
58c1kkeA_
not modelled 5.4 20 PDB header:viral protein
Chain: A: PDB Molecule:sigma 1 protein;
PDBTitle: crystal structure of reovirus attachment protein sigma12 trimer
59d2d8za1
not modelled 5.4 55 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
60d2cnaa_
not modelled 5.4 19 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Legume lectins
61d2gr8a1
not modelled 5.4 18 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
62c3jsrA_
not modelled 5.4 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:all0216 protein;
PDBTitle: x-ray structure of all0216 protein from nostoc sp. pcc 7120 at the2 resolution 1.8a. northeast structural genomics consortium target3 nsr236
63d2pwwa1
not modelled 5.3 21 Fold:TBP-like
Superfamily:YugN-like
Family:YugN-like
64c3e8vA_
not modelled 5.2 35 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
65d1ou0a_
not modelled 5.2 35 Fold:Flavodoxin-like
Superfamily:Precorrin-8X methylmutase CbiC/CobH
Family:Precorrin-8X methylmutase CbiC/CobH
66c3nsgA_
not modelled 5.2 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
67c3o27B_
not modelled 5.2 17 PDB header:dna binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
68c3qq2C_
not modelled 5.2 15 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
69d3prna_
not modelled 5.1 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
70d3cjsb1
not modelled 5.1 27 Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
71d1h9wa_
not modelled 5.0 19 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Legume lectins
72d2okga1
not modelled 5.0 13 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0