Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	I	G	I	D	L	G	G	T	K	T	E	V	I	A	L	G	D	A	G	E	Q	L	Y	R	H	R	L	P	T	P	R	D	D	Y	R	Q	T	I	E	T	I	A	T	L	V	D	M	A	E	Q	A	T	G	Q	R	G	T	V
Secondary structure
SS confidence
Disorder		?																																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	M	G	I	P	G	S	I	S	P	Y	T	G	V	V	K	N	A	N	S	T	W	L	N	G	Q	P	F	D	K	D	L	S	A	R	L	Q	R	E	V	R	L	A	N	D	A	N	C	L	A	V	S	E	A	V	D	G	A	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	A	Q	T	V	F	A	V	I	I	G	T	G	C	G	A	G	V	A	F	N	G	R	A	H	I	G	G	N	G	T	A	G	E	W	G	H	N	P	L	P	W	M	D	E	D	E	L	R	Y	R	E	E	V	P	C	Y	C	G	K
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	G	C	I	E	T	F	I	S	G	T	G	F	A	M	D	Y	R	R	L	S	G	H	A	L	K	G	S	E	I	I	R	L	V	E	E	S	D	P	V	A	E	L	A	L	R	R	Y	E	L	R	L	A	K	S	L	A	H	V	V
Secondary structure
SS confidence
Disorder																					?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	I	L	D	P	D	V	I	V	L	G	G	G	M	S	N	V	D	R	L	Y	Q	T	V	G	Q	L	I	K	Q	F	V	F	G	G	E	C	E	T	P	V	R	K	A	K	H	G	D	S	S	G	V	R	G	A	A	W	L	W	P
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.
Sequence		Q	E
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ap1 chain A Region: 1 - 302 Aligned: 302 Modelled: 302 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein Phyre2 PDB 1z6r chain C Region: 2 - 302 Aligned: 292 Modelled: 300 Confidence: 100.0% Identity: 21% PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Phyre2 PDB 1z05 chain A Region: 2 - 301 Aligned: 291 Modelled: 300 Confidence: 100.0% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Phyre2 PDB 3mcp chain A Region: 1 - 302 Aligned: 286 Modelled: 299 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution Phyre2 PDB 3vgk chain B Region: 1 - 301 Aligned: 290 Modelled: 301 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus Phyre2 PDB 2aa4 chain B Region: 2 - 302 Aligned: 285 Modelled: 301 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium Phyre2 PDB 3r8e chain A Region: 2 - 301 Aligned: 291 Modelled: 300 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution Phyre2 PDB 2hoe chain A Region: 2 - 302 Aligned: 277 Modelled: 290 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution Phyre2 PDB 2qm1 chain D Region: 2 - 302 Aligned: 292 Modelled: 301 Confidence: 100.0% Identity: 33% PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis Phyre2 PDB 2gup chain A Region: 2 - 302 Aligned: 279 Modelled: 287 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose Phyre2 PDB 1xc3 chain A Region: 1 - 301 Aligned: 272 Modelled: 287 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis Phyre2 PDB 3eo3 chain B Region: 2 - 302 Aligned: 270 Modelled: 283 Confidence: 100.0% Identity: 25% PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein Phyre2 PDB 3htv chain A Region: 2 - 302 Aligned: 264 Modelled: 271 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution Phyre2 PDB 1sz2 chain A domain 1 Region: 2 - 301 Aligned: 291 Modelled: 300 Confidence: 100.0% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Glucokinase Phyre2 PDB 2q2r chain A Region: 1 - 301 Aligned: 295 Modelled: 301 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp Phyre2 PDB 1woq chain B Region: 2 - 301 Aligned: 241 Modelled: 265 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution Phyre2 PDB 2e2p chain A Region: 1 - 302 Aligned: 274 Modelled: 278 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp Phyre2 PDB 2ch5 chain D Region: 1 - 302 Aligned: 276 Modelled: 289 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine Phyre2 PDB 3lm2 chain B Region: 1 - 302 Aligned: 214 Modelled: 238 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution Phyre2 PDB 2ap1 chain A domain 1 Region: 120 - 302 Aligned: 183 Modelled: 183 Confidence: 100.0% Identity: 34% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 1 c2ap1A_ 2 c1z6rC_ 3 c1z05A_ 4 c3mcpA_ 5 c3vgkB_ 6 c2aa4B_ 7 c3r8eA_ 8 c2hoeA_ 9 c2qm1D_ 10 c2gupA_ 11 c1xc3A_ 12 c3eo3B_ 13 c3htvA_ 14 d1sz2a1 15 c2q2rA_ 16 c1woqB_ 17 c2e2pA_ 18 c2ch5D_ 19 c3lm2B_ 20 d2ap1a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ap1A_ 100.0 37 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 2 c1z6rC_ 100.0 21 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 3 c1z05A_ 100.0 20 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 4 c3mcpA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 5 c3vgkB_ 100.0 28 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 6 c2aa4B_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 7 c3r8eA_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 8 c2hoeA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 9 c2qm1D_ 100.0 33 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 10 c2gupA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 11 c1xc3A_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 12 c3eo3B_ 100.0 25 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 13 c3htvA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 14 d1sz2a1 100.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 15 c2q2rA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 16 c1woqB_ 100.0 29 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 17 c2e2pA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 18 c2ch5D_ 100.0 17 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 19 c3lm2B_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution 20 d2ap1a1 100.0 34 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 21 d1z05a2 not modelled 100.0 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 22 d2aa4a2 not modelled 100.0 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 23 d1z6ra3 not modelled 100.0 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 24 c1zc6A_ not modelled 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 25 d2gupa2 not modelled 100.0 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 26 d2hoea2 not modelled 100.0 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 27 d1xc3a2 not modelled 100.0 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 28 d1q18a2 not modelled 100.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 29 d2ap1a2 not modelled 99.9 42 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 30 d2ewsa1 not modelled 99.9 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 31 d1z05a3 not modelled 99.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 32 d2hoea3 not modelled 99.9 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 33 d1xc3a1 not modelled 99.9 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 34 d2aa4a1 not modelled 99.9 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 35 d1z6ra2 not modelled 99.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 36 d1huxa_ not modelled 99.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 37 d1woqa2 not modelled 99.9 30 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 38 d1woqa1 not modelled 99.9 30 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 39 d2ch5a1 not modelled 99.9 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 40 c1zbsA_ not modelled 99.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 41 c1zxoB_ not modelled 99.8 12 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 42 d2gupa1 not modelled 99.8 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 43 c1v4sA_ not modelled 99.7 21 PDB header:transferase Chain: A: PDB Molecule:glucokinase isoform 2; PDBTitle: crystal structure of human glucokinase 44 c1bdgA_ not modelled 99.7 18 PDB header:hexokinase Chain: A: PDB Molecule:hexokinase; PDBTitle: hexokinase from schistosoma mansoni complexed with glucose 45 c1ig8A_ not modelled 99.7 18 PDB header:transferase Chain: A: PDB Molecule:hexokinase pii; PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence 46 c3hm8D_ not modelled 99.7 18 PDB header:transferase Chain: D: PDB Molecule:hexokinase-3; PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3 47 c1qhaA_ not modelled 99.7 17 PDB header:transferase Chain: A: PDB Molecule:protein (hexokinase); PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp 48 d1q18a1 not modelled 99.6 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 49 d2ch5a2 not modelled 99.5 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 50 c3h1qB_ not modelled 99.4 16 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 51 d1zc6a1 not modelled 99.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 52 c1sazA_ not modelled 99.1 15 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 53 c2ivoC_ not modelled 99.1 15 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 54 c3ifrB_ not modelled 99.1 16 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 55 c2dpnB_ not modelled 99.1 21 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 56 d1zc6a2 not modelled 99.1 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 57 c2nlxA_ not modelled 99.1 21 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 58 c3hz6A_ not modelled 99.1 12 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 59 c3enoB_ not modelled 99.0 14 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 60 c3gbtA_ not modelled 98.9 17 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 61 c2zf5O_ not modelled 98.9 18 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 62 c1xupO_ not modelled 98.8 18 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 63 c3en9B_ not modelled 98.8 16 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 64 c3flcX_ not modelled 98.8 20 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 65 c3gg4B_ not modelled 98.8 18 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 66 d1saza2 not modelled 98.7 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 67 c2d4wA_ not modelled 98.7 20 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 68 c3p4iA_ not modelled 98.7 18 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 69 c3ezwD_ not modelled 98.7 19 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 70 c2w40C_ not modelled 98.7 16 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 71 c3g25B_ not modelled 98.7 18 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 72 c2cgkB_ not modelled 98.6 16 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 73 c1x3nA_ not modelled 98.5 15 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 74 d1v4sa1 not modelled 98.4 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 75 d1bdga1 not modelled 98.4 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 76 c1tuuA_ not modelled 98.4 12 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 77 d1czan2 not modelled 98.4 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 78 c2ychA_ not modelled 98.4 17 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 79 c3khyA_ not modelled 98.3 17 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 80 d1czan3 not modelled 98.3 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 81 d1bg3a4 not modelled 98.3 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 82 d1bg3a3 not modelled 98.3 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 83 d1bg3a2 not modelled 98.2 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 84 d2p3ra1 not modelled 98.2 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 85 c1glbG_ not modelled 98.2 11 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 86 c3dwlB_ not modelled 98.2 14 PDB header:structural protein Chain: B: PDB Molecule:actin-related protein 3; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 87 d1ig8a1 not modelled 98.2 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 88 c2iirJ_ not modelled 98.2 15 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 89 c1o1f4_ not modelled 98.2 10 PDB header:contractile protein Chain: 4: PDB Molecule:skeletal muscle actin; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle 90 d1g99a2 not modelled 98.1 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 91 c2i7pA_ not modelled 98.1 19 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 92 d1czan1 not modelled 98.1 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 93 d1bg3a1 not modelled 98.1 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 94 c3smpA_ not modelled 98.1 16 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha 95 d2e1za2 not modelled 98.0 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 96 d1bdga2 not modelled 98.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 97 c1jcgA_ not modelled 98.0 18 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 98 d1ig8a2 not modelled 98.0 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 99 d1v4sa2 not modelled 98.0 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 100 c3i8bA_ not modelled 97.9 14 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 101 c3h6eB_ not modelled 97.9 20 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 102 c1hpmA_ not modelled 97.9 17 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 103 c3jvpA_ not modelled 97.8 18 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 104 d1czan4 not modelled 97.7 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 105 d1zbsa1 not modelled 97.7 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 106 c3djcA_ not modelled 97.6 15 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 107 d1r59o1 not modelled 97.5 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 108 c2v7zA_ not modelled 97.4 15 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 109 d1zxoa2 not modelled 97.4 9 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 110 c2h3gX_ not modelled 97.3 17 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 111 c3bf1C_ not modelled 97.3 18 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 112 c2v7yA_ not modelled 97.1 18 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 113 d3bzka5 not modelled 96.8 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 114 c2p9lA_ not modelled 96.8 15 PDB header:structural protein Chain: A: PDB Molecule:actin-like protein 3; PDBTitle: crystal structure of bovine arp2/3 complex 115 c3cetA_ not modelled 96.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63 116 c3iucC_ not modelled 96.6 18 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 117 c3d2fC_ not modelled 96.6 19 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 118 d2e8aa2 not modelled 96.5 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 119 c3tsuA_ not modelled 96.5 14 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 120 d1jcea2 not modelled 96.4 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0