Email l.a.kelley@imperial.ac.uk Description P33229 Date Thu Jan 5 11:51:28 GMT 2012 Unique Job ID e6a8c7f38dc4ec76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1nuiA_ 68.9 32 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 2 d1wiia_ 54.8 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 3 c2dcuB_ 46.2 31 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp 4 d2drpa2 45.7 86 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 5 d1k81a_ 45.2 25 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 6 c2au3A_ 44.6 33 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 7 c1neeA_ 42.4 21 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum 8 c3cw2M_ 39.9 21 PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . 9 d1d0qa_ 39.6 42 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 10 c4a17Y_ 36.4 35 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 11 d1vqoz1 36.2 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 12 d2fiya1 35.5 29 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 13 c1yshD_ 35.0 33 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 14 c2yrmA_ 34.5 37 PDB header:gene regulation Chain: A: PDB Molecule:b-cell lymphoma 6 protein; PDBTitle: solution structure of the 1st zf-c2h2 domain from human b-2 cell lymphoma 6 protein 15 c2zkrz_ 34.4 25 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 d1jj2y_ 33.8 22 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 17 c2e9hA_ 33.3 25 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 18 c2qa4Z_ 33.1 25 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 19 c1nnjA_ 31.9 21 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 20 d1ffkw_ 31.9 29 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 21 c3cc4Z_ not modelled 29.6 25 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 22 c1s1i9_ not modelled 28.2 29 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 23 c3jyw9_ not modelled 27.7 29 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 24 c3hi2C_ not modelled 26.2 57 PDB header:dna binding protein/toxin Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit); PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022) 25 c1x31D_ not modelled 26.0 67 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 26 c3eswA_ not modelled 25.9 27 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 27 d1wd2a_ not modelled 25.2 45 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 28 c3k7aM_ not modelled 24.1 19 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 29 d1g6ma_ not modelled 23.7 100 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 30 c2kdxA_ not modelled 22.3 21 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 31 d1v6pa_ not modelled 21.7 100 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 32 d1x3za1 not modelled 21.2 27 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 33 c1k82D_ not modelled 21.2 33 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 34 d1pfta_ not modelled 20.3 22 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 35 c2gb5B_ not modelled 18.6 26 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 36 c2kvgA_ not modelled 18.5 78 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 37 d1i4pa1 not modelled 17.7 30 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 38 c3izbP_ not modelled 17.0 44 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 39 d1dx8a_ not modelled 17.0 32 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 40 c2xqyA_ not modelled 16.9 26 PDB header:immune system/viral protein Chain: A: PDB Molecule:envelope glycoprotein h; PDBTitle: crystal structure of pseudorabies core fragment of2 glycoprotein h in complex with fab d6.3 41 d2ds5a1 not modelled 16.7 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 42 c1ovxB_ not modelled 16.3 40 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 43 d1ubdc4 not modelled 16.0 71 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 c1hk8A_ not modelled 15.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 45 d1hk8a_ not modelled 15.4 26 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 46 c3iz6P_ not modelled 15.1 44 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 47 c2ds8A_ not modelled 15.1 40 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 48 d1qm7a_ not modelled 13.8 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 49 d2g6ta1 not modelled 13.3 41 Fold:CAC2185-like Superfamily:CAC2185-like Family:CAC2185-like 50 d1igtb3 not modelled 13.2 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 51 d2f4ma1 not modelled 12.6 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 52 d1vdda_ not modelled 12.5 23 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 53 d1l1ta3 not modelled 12.3 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 54 d1tfsa_ not modelled 12.1 67 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 55 c1vddC_ not modelled 12.0 23 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 56 c3ov5A_ not modelled 10.9 44 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: atomic structure of the xanthomonas citri virb7 globular domain. 57 d1iq9a_ not modelled 10.8 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 58 d1tdza3 not modelled 10.4 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 59 d1ntxa_ not modelled 10.3 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 60 d3ebxa_ not modelled 10.2 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 61 d1lkoa2 not modelled 9.9 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 62 c2ja1A_ not modelled 9.1 44 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. 63 c2jvnA_ not modelled 8.9 33 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 64 c3hh7A_ not modelled 8.9 45 PDB header:toxin Chain: A: PDB Molecule:muscarinic toxin-like protein 3 homolog; PDBTitle: structural and functional characterization of a novel2 homodimeric three-finger neurotoxin from the venom of3 ophiophagus hannah (king cobra) 65 d1k3xa3 not modelled 8.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 66 c2riqA_ not modelled 8.5 33 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 67 d1vb0a_ not modelled 8.2 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 68 c1iclA_ not modelled 8.2 89 PDB header:de novo protein Chain: A: PDB Molecule:th1ox; PDBTitle: solution structure of designed beta-sheet mini-protein th1ox 69 c3htkC_ not modelled 8.1 50 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 70 c2f5qA_ not modelled 8.1 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 71 c2elpA_ not modelled 8.0 60 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 72 d1r2za3 not modelled 7.8 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 73 c3mv2A_ not modelled 7.7 19 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop 74 d1k82a3 not modelled 7.6 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 75 d1ee8a3 not modelled 7.3 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 76 c2l4wA_ not modelled 7.2 44 PDB header:protein transport Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of the xanthomonas virb7 77 c2qq0B_ not modelled 7.0 48 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp 78 c2d88A_ not modelled 6.9 33 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:protein mical-3; PDBTitle: solution structure of the ch domain from human mical-32 protein 79 c3cngC_ not modelled 6.4 23 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 80 c2opfA_ not modelled 6.3 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 81 d1z84a1 not modelled 6.2 67 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 82 c2qgpA_ not modelled 5.8 43 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 83 c2eoyA_ not modelled 5.8 83 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473 84 c2k5cA_ not modelled 5.8 71 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 85 d1yuza2 not modelled 5.7 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 86 d1qxfa_ not modelled 5.6 33 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 87 c1dvbA_ not modelled 5.5 20 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 88 d2j0151 not modelled 5.5 28 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 89 d1drsa_ not modelled 5.3 35 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Dendroaspin 90 d1wwra1 not modelled 5.3 40 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 91 c3a9fA_ not modelled 5.3 43 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum 92 c2hr5B_ not modelled 5.1 63 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 93 c2xznQ_ not modelled 5.1 42 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2