Emaill.a.kelley@imperial.ac.uk
DescriptionP0AFU6
DateThu Jan 5 11:27:18 GMT 2012
Unique Job IDe6650032d8d2a92e

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c2k5jB_



100.0 100 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c2bj3D_



98.1 11 PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
3d2bj7a1



98.1 12 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4c1q5vB_



98.0 21 PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
5c2ca9B_



98.0 18 PDB header:transcriptional regulation
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
6d2hzaa1



97.3 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
7d2hzab1



97.1 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
8d2cpga_



95.0 23 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c2rbfB_



94.4 13 PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
10c2k9iB_



93.5 24 PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid prn1, complete sequence;
PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus
11c3h87D_



91.5 20 PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
12c2an7A_



88.7 19 PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
13c2kelB_



86.3 19 PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
14d2ay0a1



79.0 13 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
15d1p94a_



78.0 15 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
16c2k29A_



76.5 18 PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
17c3kxeD_



66.5 11 PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
18d2bsqe1



64.5 14 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
19d1mnta_



48.7 17 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
20c2q2kA_



32.9 26 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
21c1kcfB_



not modelled 28.1 33 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
22d1y9ba1



not modelled 24.8 12 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
23c3c5yD_



not modelled 21.3 9 PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
24c2qhoF_



not modelled 19.9 28 PDB header:protein binding/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase edd1;
PDBTitle: crystal structure of the uba domain from edd ubiquitin2 ligase in complex with ubiquitin
25c2hwyB_



not modelled 18.6 27 PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
26c2kkeA_



not modelled 18.3 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a dimeric protein of unknown2 function from methanobacterium thermoautotrophicum,3 northeast structural genomics consortium target tr5
27c2ppwA_



not modelled 15.6 8 PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
28c1ny9A_



not modelled 14.8 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator tipa-s;
PDBTitle: antibiotic binding domain of a tipa-class multidrug2 resistance transcriptional regulator
29d1ny9a_



not modelled 14.8 13 Fold:Antibiotic binding domain of TipA-like multidrug resistance regulators
Superfamily:Antibiotic binding domain of TipA-like multidrug resistance regulators
Family:Antibiotic binding domain of TipA-like multidrug resistance regulators
30c1yxeA_



not modelled 14.2 10 PDB header:immune system
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: structure and inter-domain interactions of domain ii from the blood2 stage malarial protein, apical membrane antigen 1
31c1u9pA_



not modelled 12.8 10 PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
32c2xv9A_



not modelled 11.3 17 PDB header:lipid binding protein
Chain: A: PDB Molecule:aba-1a1 repeat unit;
PDBTitle: the solution structure of aba-1a saturated with oleic acid
33d2proc1



not modelled 10.7 42 Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
34c3iwfA_



not modelled 10.7 12 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
35c3onoA_



not modelled 10.3 5 PDB header:isomerase
Chain: A: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
36d2o3fa1



not modelled 9.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:RpiR-like
37c2o3fC_



not modelled 9.9 18 PDB header:transcription
Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh;
PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168.
38c3oeoD_



not modelled 9.8 12 PDB header:signaling protein
Chain: D: PDB Molecule:spheroplast protein y;
PDBTitle: the crystal structure e. coli spy
39c3kk4B_



not modelled 9.5 10 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
40d2je6b2



not modelled 9.1 25 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
41c3o39A_



not modelled 9.0 12 PDB header:chaperone
Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation;
PDBTitle: crystal structure of spy
42d1uxca_



not modelled 8.9 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
43d2phcb1



not modelled 8.8 12 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
44d2qklb1



not modelled 8.5 28 Fold:Dcp2 domain-like
Superfamily:Dcp2 domain-like
Family:Dcp2 box A domain
45d1znda1



not modelled 8.4 23 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
46d1to0a_



not modelled 8.3 10 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
47d1gm6a_



not modelled 8.0 13 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
48d1l5aa2



not modelled 7.5 13 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
49c2l8nA_



not modelled 7.5 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
50d2c2vv1



not modelled 7.3 17 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
51d1q9ja2



not modelled 7.2 16 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
52c2lcvA_



not modelled 7.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
53c2zp2B_



not modelled 6.9 12 PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
54c2e4jA_



not modelled 6.9 16 PDB header:isomerase
Chain: A: PDB Molecule:prostaglandin-h2 d-isomerase;
PDBTitle: solution structure of mouse lipocalin-type prostaglandin d2 synthase
55c3epvB_



not modelled 6.9 13 PDB header:metal binding protein
Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr;
PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms
56d1cjya2



not modelled 6.9 23 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:Lysophospholipase
57c2wteB_



not modelled 6.8 26 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
58c3qzcA_



not modelled 6.8 14 PDB header:signaling protein
Chain: A: PDB Molecule:periplasmic protein cpxp;
PDBTitle: structure of the periplasmic stress response protein cpxp
59c4a1qB_



not modelled 6.4 26 PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park
60c2qkmF_



not modelled 6.4 23 PDB header:hydrolase
Chain: F: PDB Molecule:spac19a8.12 protein;
PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex
61d2obpa1



not modelled 5.9 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ReutB4095-like
62d1y0ya2



not modelled 5.9 12 Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
63c2kp6A_



not modelled 5.8 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1
64d1ns5a_



not modelled 5.8 17 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
65d1lcda_



not modelled 5.8 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
66d1uxda_



not modelled 5.7 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
67d2hsga1



not modelled 5.7 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
68d1qpza1



not modelled 5.7 12 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
69d2nn6d2



not modelled 5.5 13 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
70c2xstA_



not modelled 5.5 23 PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 15;
PDBTitle: crystal structure of the human lipocalin 15
71c3by0B_



not modelled 5.4 16 PDB header:ligand binding protein
Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin;
PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin
72c3p3vB_



not modelled 5.2 10 PDB header:transferase
Chain: B: PDB Molecule:pts system, n-acetylgalactosamine-specific iib component;
PDBTitle: crystal structure of a pts dependent n-acetyl-galactosamine-iib2 component (agav, spy_0631) from streptococcus pyogenes at 1.65 a3 resolution
73d1t1ha_



not modelled 5.2 8 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
74c3i8oA_



not modelled 5.1 10 PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from2 methanocaldococcus jannaschii dsm 2661.
75d1cuka1



not modelled 5.1 18 Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain