Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A821
DateThu Jan 5 11:06:39 GMT 2012
Unique Job IDe33a0b0ca5a128c7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3fd0B_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
Confidence and coverage
Confidence:100.0% Coverage: 60%
279 residues ( 60% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
407 residues ( 88%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQMLDEAREVIRGSQTLPAW
Secondary structure 
SS confidence 
Disorder  ????
?
??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  CENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAEAAVEAVAQAMRSPVTLEY
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEI
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNENTALLMKVHTSNYSIQGFTKAID
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEPMPQELIAAGVSLVSFSGDKLLGGP
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  QAGIIVGKKEMIARLQSHPLKRALRADKMTLAALEATLRLYLHPEALSEKLPTLRLLTRS
Secondary structure 
SS confidence 
Disorder 
??
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  AEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLSQIGSGSLPVDRLPSAALTFTPHDGRGSH
Secondary structure 
SS confidence 
Disorder 
?
?????
?
????
Disorder confidence 
 
   .........430.........440.........450.........460...
Sequence  LESLAARWRELPVPVIGRIYDGRLWLDLRCLEDEQRFLEMLLK
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3fd0 chain B

3D model

Region: 69 - 364
Aligned: 279
Modelled: 290
Confidence: 100.0%
Identity: 15%
PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution

Phyre2

PDB 3ht4 chain B

3D model

Region: 72 - 433
Aligned: 315
Modelled: 321
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213

Phyre2

PDB 2cb1 chain A

3D model

Region: 85 - 463
Aligned: 352
Modelled: 368
Confidence: 100.0%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.

Phyre2

PDB 3ndn chain C

3D model

Region: 128 - 463
Aligned: 299
Modelled: 307
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate

Phyre2

PDB 3hvy chain C

3D model

Region: 44 - 364
Aligned: 294
Modelled: 306
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution

Phyre2

PDB 1qgn chain A

3D model

Region: 108 - 463
Aligned: 317
Modelled: 328
Confidence: 100.0%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1ibj chain C

3D model

Region: 128 - 463
Aligned: 296
Modelled: 308
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana

Phyre2

PDB 1ibj chain A

3D model

Region: 128 - 463
Aligned: 296
Modelled: 308
Confidence: 100.0%
Identity: 18%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3gwp chain A

3D model

Region: 80 - 391
Aligned: 289
Modelled: 300
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution

Phyre2

PDB 2gqn chain B

3D model

Region: 85 - 463
Aligned: 338
Modelled: 351
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide

Phyre2

PDB 3bcx chain A

3D model

Region: 60 - 461
Aligned: 359
Modelled: 376
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase

Phyre2

PDB 1y4i chain A domain 1

3D model

Region: 108 - 463
Aligned: 319
Modelled: 330
Confidence: 100.0%
Identity: 19%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1cl1 chain A

3D model

Region: 87 - 463
Aligned: 336
Modelled: 349
Confidence: 100.0%
Identity: 18%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2ctz chain A domain 1

3D model

Region: 108 - 463
Aligned: 336
Modelled: 345
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2c7t chain A

3D model

Region: 98 - 462
Aligned: 334
Modelled: 341
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.

Phyre2

PDB 3aem chain D

3D model

Region: 108 - 463
Aligned: 316
Modelled: 326
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate

Phyre2

PDB 2nmp chain C

3D model

Region: 115 - 463
Aligned: 310
Modelled: 321
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase

Phyre2

PDB 1i41 chain J

3D model

Region: 108 - 463
Aligned: 317
Modelled: 328
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa

Phyre2

PDB 3e6g chain A

3D model

Region: 128 - 463
Aligned: 298
Modelled: 308
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Phyre2

PDB 1n8p chain A

3D model

Region: 128 - 463
Aligned: 297
Modelled: 304
Confidence: 100.0%
Identity: 19%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2
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c3fd0B_
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c3ht4B_
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c2cb1A_
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c3ndnC_
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c3hvyC_
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d1qgna_
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c1ibjC_
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d1ibja_
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c3gwpA_
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c2gqnB_
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c3bcxA_
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d1y4ia1
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d1cl1a_
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d2ctza1
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c2c7tA_
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c3aemD_
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c2nmpC_
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c1i41J_
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c3e6gA_
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d1n8pa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fd0B_
100.0 15 PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
2c3ht4B_
100.0 20 PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213
3c2cb1A_
100.0 21 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
4c3ndnC_
100.0 20 PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
5c3hvyC_
100.0 17 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution
6d1qgna_
100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
7c1ibjC_
100.0 18 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
8d1ibja_
100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
9c3gwpA_
100.0 17 PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution
10c2gqnB_
100.0 17 PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
11c3bcxA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
12d1y4ia1
100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
13d1cl1a_
100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
14d2ctza1
100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
15c2c7tA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
16c3aemD_
100.0 14 PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
17c2nmpC_
100.0 18 PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
18c1i41J_
100.0 20 PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
19c3e6gA_
100.0 20 PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae
20d1n8pa_
100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
21d1e5ea_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
22d1cs1a_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
23c2r0tA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
24d1wyub1
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
25c3qi6B_
not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
26d1gc0a_
not modelled 100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
27d1mdoa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
28c2po3B_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
29d1b9ha_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30d1wyua1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
31c3ju7B_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
32c3pj0D_
not modelled 100.0 13 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
33d2fnua1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
34d1o69a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
35c2ogeC_
not modelled 99.9 16 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
36c3nx3A_
not modelled 99.9 10 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
37c3mafB_
not modelled 99.9 16 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
38c2w8wA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
39c3dr4B_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
40c3nysA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
41d2byla1
not modelled 99.9 9 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
42c3hbxB_
not modelled 99.9 15 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
43c3ruyB_
not modelled 99.9 12 PDB header:transferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis
44c1oatB_
not modelled 99.9 10 PDB header:aminotransferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase
45c3caiA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
46d1z7da1
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
47c3mc6C_
not modelled 99.9 12 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
48d1bs0a_
not modelled 99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
49c3ri6A_
not modelled 99.9 18 PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
50c3uwcA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
51c3l44A_
not modelled 99.9 15 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1;
PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase
52d1jf9a_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
53d1c4ka2
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
54c3frkB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
55c3h7fB_
not modelled 99.9 19 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
56d1vefa1
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
57c3b46B_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
58d2bwna1
not modelled 99.9 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
59c3e9kA_
not modelled 99.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
60c3dodA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis
61d1s0aa_
not modelled 99.9 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
62c3n0lA_
not modelled 99.9 16 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
63c2pb2B_
not modelled 99.9 12 PDB header:transferase
Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase;
PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding
64d1pffa_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
65c3a8uX_
not modelled 99.9 13 PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase
66d1fc4a_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
67c3tqxA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
68d1c7ga_
not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
69c2ordA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
70c3hmuA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi
71d2gsaa_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
72c3i4jC_
not modelled 99.9 9 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
73c2eh6A_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
74c3a2bA_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
75c1z7dE_
not modelled 99.9 11 PDB header:transferase
Chain: E: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii
76d1zoda1
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
77d2aeua1
not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SelA-like
78d3bc8a1
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
79d1kl1a_
not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
80c3lwsF_
not modelled 99.9 14 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
81c2x3lA_
not modelled 99.9 14 PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
82c3e2yB_
not modelled 99.9 11 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
83c3jtxB_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
84c3bs8A_
not modelled 99.9 15 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis
85c3nuiA_
not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:pyruvate transaminase;
PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17
86c2cy8A_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:d-phenylglycine aminotransferase;
PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201
87d1qz9a_
not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
88c2dkjB_
not modelled 99.9 15 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
89d2r5ea1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
90c2e7uA_
not modelled 99.9 18 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8
91c2zsmA_
not modelled 99.9 17 PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form
92d1m6sa_
not modelled 99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
93c3dxvA_
not modelled 99.9 12 PDB header:isomerase
Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase;
PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae
94c3ecdC_
not modelled 99.9 16 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
95c2hzpA_
not modelled 99.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
96d1dfoa_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
97c3h14A_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
98c3oksB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
99d1bw0a_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
100c3hqtB_
not modelled 99.9 13 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
101c1c4kA_
not modelled 99.9 14 PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)
102d1sffa_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
103d1w7la_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
104c3nraA_
not modelled 99.9 18 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
105d2cfba1
not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
106d1tpla_
not modelled 99.9 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
107c3hl2D_
not modelled 99.9 13 PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex
108c3dc1A_
not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
109d1vjoa_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
110c3nnkC_
not modelled 99.9 16 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
111c3f9tB_
not modelled 99.9 14 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
112c3f0hA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
113d1js3a_
not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
114c3fcrA_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution
115c3i5tB_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131
116d2v1pa1
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
117c3ffrA_
not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
118d1j32a_
not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
119c2o0rA_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
120c2jisA_
not modelled 99.9 12 PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0