Email l.a.kelley@imperial.ac.uk Description P76177 Date Thu Jan 5 12:20:10 GMT 2012 Unique Job ID e2645913323a8a7e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2jnaa1 99.9 25 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 2 d2noca1 99.9 22 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 3 c3kd4A_ 32.6 26 PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution 4 c2k4qA_ 28.8 13 PDB header:viral protein Chain: A: PDB Molecule:major tail protein v; PDBTitle: the solution structure of gpv, the major tail protein from2 bacteriophage lambda 5 c2jz5A_ 28.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0419; PDBTitle: nmr solution structure of protein vpa0419 from vibrio2 parahaemolyticus. northeast structural genomics target3 vpr68 6 c2xznZ_ 26.0 21 PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 7 c3k3nA_ 25.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: crystal structure of the catalytic core domain of human phf8 8 c2wkdA_ 22.7 64 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 9 c3kv4A_ 22.3 31 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:phd finger protein 8; PDBTitle: structure of phf8 in complex with histone h3 10 c2k38A_ 20.4 69 PDB header:antimicrobial protein Chain: A: PDB Molecule:cupiennin-1a; PDBTitle: cupiennin 1a, nmr, minimized average structure 11 c2qazC_ 18.7 21 PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog 12 c2khdA_ 18.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vc_a0919; PDBTitle: solution nmr structure of vc_a0919 from vibrio cholerae.2 northeast structural genomics consortium target vcr52 13 c2y1bA_ 17.4 21 PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein, signal; PDBTitle: crystal structure of the e. coli outer membrane lipoprotein2 rcsf 14 d1ft8a2 17.4 32 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 15 d2g39a1 15.3 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 16 d2i9fa1 15.1 38 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 17 d2bbaa1 15.0 17 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Ephrin receptor ligand binding domain 18 c3b9nB_ 15.0 11 PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) 19 d2zfga1 14.4 33 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 20 c2qasA_ 14.4 21 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 21 d2nysa1 not modelled 14.1 21 Fold:SspB-like Superfamily:SspB-like Family:AGR C 3712p-like 22 c2nysA_ not modelled 14.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:agr_c_3712p; PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88. 23 c2gjhA_ not modelled 13.4 36 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 24 d1gqpa_ not modelled 13.1 5 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:APC10-like 25 c3n9mC_ not modelled 12.7 34 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 26 c3p56F_ not modelled 12.2 27 PDB header:hydrolase/replication Chain: F: PDB Molecule:ribonuclease h2 subunit c; PDBTitle: the structure of the human rnase h2 complex defines key interaction2 interfaces relevant to enzyme function and human disease 27 c3izbT_ not modelled 12.1 29 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein rps21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 28 c2ebuA_ not modelled 11.7 15 PDB header:replication Chain: A: PDB Molecule:replication factor c subunit 1; PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1 29 c2w6rA_ not modelled 11.6 12 PDB header:lyase Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit PDBTitle: crystal structure of an artificial (ba)8-barrel protein2 designed from identical half barrels 30 d1lucb_ not modelled 11.3 15 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 31 c2kgyA_ not modelled 11.3 62 PDB header:immune system Chain: A: PDB Molecule:possible exported protein; PDBTitle: solution structure of rv0603 protein from mycobacterium2 tuberculosis h37rv 32 c2ov7C_ not modelled 11.1 38 PDB header:ribosomal protein Chain: C: PDB Molecule:50s ribosomal protein l1; PDBTitle: the first domain of the ribosomal protein l1 from thermus2 thermophilus 33 d1x94a_ not modelled 11.0 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 34 c2w62A_ not modelled 11.0 10 PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose 35 d1koha2 not modelled 10.8 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 36 c3hjaB_ not modelled 10.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi 37 c3iz6T_ not modelled 10.8 28 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 38 c3ir9A_ not modelled 10.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 39 c2xznB_ not modelled 10.6 18 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 40 d1cida1 not modelled 10.5 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 41 d1itpa_ not modelled 10.5 15 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 42 c1wwtA_ not modelled 10.4 42 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 43 c3no4A_ not modelled 10.3 18 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 44 d1a8ya2 not modelled 10.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Calsequestrin 45 c3i4oA_ not modelled 9.9 21 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 46 c2f9jP_ not modelled 9.8 57 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 47 d1ah9a_ not modelled 9.7 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 d1js2a_ not modelled 9.6 36 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 49 c3pu3A_ not modelled 9.5 29 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 2; PDBTitle: phf2 jumonji domain-nog complex 50 c2c7hA_ not modelled 9.5 24 PDB header:ubiquitin-like protein Chain: A: PDB Molecule:retinoblastoma-binding protein 6, isoform 3; PDBTitle: solution nmr structure of the dwnn domain from human rbbp6 51 c3a9lB_ not modelled 9.5 12 PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase 52 d1hr0w_ not modelled 9.5 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 c3na2C_ not modelled 9.3 41 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 54 c3kvaA_ not modelled 9.2 24 PDB header:h3k4me3 binding protein, transferase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d; PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate 55 d2qi2a3 not modelled 9.1 17 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 56 d1o9aa1 not modelled 9.1 39 Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module 57 d1b0ya_ not modelled 9.1 36 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 58 d1phoa_ not modelled 9.1 33 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 59 c2k3iA_ not modelled 9.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yiis; PDBTitle: solution nmr structure of protein yiis from shigella2 flexneri. northeast structural genomics consortium target3 sfr90 60 c2k3mA_ not modelled 9.1 63 PDB header:membrane protein Chain: A: PDB Molecule:rv1761c; PDBTitle: rv1761c 61 c2yu1A_ not modelled 9.1 29 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 62 c3nsgA_ not modelled 9.1 27 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 63 c3lubE_ not modelled 8.8 8 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 64 c2i2xD_ not modelled 8.7 14 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 65 d1iuaa_ not modelled 8.7 38 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 66 d1l7ba_ not modelled 8.5 19 Fold:BRCT domain Superfamily:BRCT domain Family:DNA ligase 67 c2qruA_ not modelled 8.4 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an alpha/beta hydrolase superfamily protein from2 enterococcus faecalis 68 d1tg7a4 not modelled 8.2 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Beta-galactosidase LacA, domain 2 69 c3rj1S_ not modelled 8.2 15 PDB header:transcription Chain: S: PDB Molecule:mediator of rna polymerase ii transcription subunit 18; PDBTitle: architecture of the mediator head module 70 c2j58G_ not modelled 8.2 16 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 71 c1fybA_ not modelled 8.2 56 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:proteinase inhibitor; PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata 72 d3elga1 not modelled 8.1 38 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 73 c3sdoB_ not modelled 7.9 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei 74 c2hzsH_ not modelled 7.8 17 PDB header:transcription Chain: H: PDB Molecule:rna polymerase ii mediator complex subunit 18; PDBTitle: structure of the mediator head submodule med8c/18/20 75 d1eaka1 not modelled 7.7 12 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 76 d1luca_ not modelled 7.6 10 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 77 c2ixsB_ not modelled 7.6 15 PDB header:hydrolase Chain: B: PDB Molecule:sdai restriction endonuclease; PDBTitle: structure of sdai restriction endonuclease 78 c3kioC_ not modelled 7.4 24 PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease h2 subunit c; PDBTitle: mouse rnase h2 complex 79 d1osma_ not modelled 7.3 33 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 80 c3g7dA_ not modelled 7.2 44 PDB header:biosynthetic protein Chain: A: PDB Molecule:phpd; PDBTitle: native phpd with cadmium atoms 81 d1nyra2 not modelled 7.1 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 82 d1tiha_ not modelled 6.9 56 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 83 d1hlqa_ not modelled 6.8 46 Fold:HIPIP (high potential iron protein) Superfamily:HIPIP (high potential iron protein) Family:HIPIP (high potential iron protein) 84 d2nsfa2 not modelled 6.8 44 Fold:SCP-like Superfamily:SCP-like Family:Micothiol-dependent maleylpyruvate isomerase C-terminal domain-like 85 c2wgkA_ not modelled 6.7 9 PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida 86 c3ckhA_ not modelled 6.6 25 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 4; PDBTitle: crystal structure of eph a4 receptor 87 c2dqlA_ not modelled 6.6 27 PDB header:circadian clock protein Chain: A: PDB Molecule:pex protein; PDBTitle: crytal structure of the circadian clock associated protein2 pex from anabaena 88 d1wmxb_ not modelled 6.5 29 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 89 c2ke0A_ not modelled 6.5 23 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 90 d1v5ib1 not modelled 6.5 11 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 91 c2xhzC_ not modelled 6.4 13 PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography 92 c1oy8A_ not modelled 6.4 10 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 93 c2fl8N_ not modelled 6.3 34 PDB header:virus/viral protein Chain: N: PDB Molecule:baseplate structural protein gp10; PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation. 94 d1fyba1 not modelled 6.2 56 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 95 c3e20C_ not modelled 6.2 14 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 96 d1bjxa_ not modelled 6.2 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 97 d2al6a3 not modelled 6.1 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 98 d1tkea1 not modelled 6.1 45 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 99 c2qbxB_ not modelled 5.9 32 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-b receptor 2; PDBTitle: ephb2/snew antagonistic peptide complex