Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	G	G	K	R	V	Q	T	A	R	P	N	R	I	N	G	E	I	R	A	Q	E	V	R	L	T	G	L	E	G	E	Q	L	G	I	V	S	L	R	E	A	L	E	K	A	E	E	A	G	V	D	L	V	E	I	S	P	N	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?															?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	P	P	V	C	R	I	M	D	Y	G	K	F	L	Y	E	K	S	K	S	S	K	E	Q	K	K	K	Q	K	V	I	Q	V	K	E	I	K	F	R	P	G	T	D	E	G	D	Y	Q	V	K	L	R	S	L	I	R	F	L	E	E
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	D	K	A	K	I	T	L	R	F	R	G	R	E	M	A	H	Q	Q	I	G	M	E	V	L	N	R	V	K	D	D	L	Q	E	L	A	V	V	E	S	F	P	T	K	I	E	G	R	Q	M	I	M	V	L	A	P	K	K	K	Q
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?																				?	?	?	?	?	?	?	?	?	?										?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ife chain A Region: 90 - 180 Aligned: 91 Modelled: 91 Confidence: 100.0% Identity: 100% Fold: IF3-like Superfamily: Translation initiation factor IF3, C-terminal domain Family: Translation initiation factor IF3, C-terminal domain Phyre2 PDB 2crq chain A Region: 83 - 180 Aligned: 97 Modelled: 98 Confidence: 100.0% Identity: 20% PDB header:translation Chain: A: PDB Molecule:mitochondrial translational initiation factor 3; PDBTitle: solution structure of c-terminal domain of riken cdna2 2810012l14 Phyre2 PDB 1tif chain A Region: 11 - 86 Aligned: 76 Modelled: 76 Confidence: 99.9% Identity: 57% Fold: beta-Grasp (ubiquitin-like) Superfamily: Translation initiation factor IF3, N-terminal domain Family: Translation initiation factor IF3, N-terminal domain Phyre2 PDB 1tig chain A Region: 91 - 179 Aligned: 88 Modelled: 89 Confidence: 99.9% Identity: 48% Fold: IF3-like Superfamily: Translation initiation factor IF3, C-terminal domain Family: Translation initiation factor IF3, C-terminal domain Phyre2 PDB 1i96 chain V Region: 92 - 178 Aligned: 86 Modelled: 83 Confidence: 99.9% Identity: 57% Fold: IF3-like Superfamily: Translation initiation factor IF3, C-terminal domain Family: Translation initiation factor IF3, C-terminal domain Phyre2 PDB 3nqr chain D Region: 20 - 44 Aligned: 25 Modelled: 25 Confidence: 39.5% Identity: 24% PDB header:transport protein Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc; PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2 Phyre2 PDB 2oux chain A domain 2 Region: 20 - 48 Aligned: 29 Modelled: 29 Confidence: 38.9% Identity: 21% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 3i8n chain B Region: 20 - 44 Aligned: 25 Modelled: 25 Confidence: 37.5% Identity: 32% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp2912; PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633. Phyre2 PDB 1k4i chain A Region: 24 - 57 Aligned: 34 Modelled: 34 Confidence: 36.9% Identity: 21% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 3lhh chain A Region: 20 - 44 Aligned: 25 Modelled: 22 Confidence: 36.6% Identity: 24% PDB header:membrane protein Chain: A: PDB Molecule:cbs domain protein; PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1. Phyre2 PDB 2yvx chain A domain 2 Region: 20 - 48 Aligned: 29 Modelled: 29 Confidence: 36.2% Identity: 24% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 1vr9 chain A domain 3 Region: 20 - 49 Aligned: 30 Modelled: 30 Confidence: 34.8% Identity: 30% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 1vr9 chain B Region: 20 - 49 Aligned: 30 Modelled: 30 Confidence: 34.8% Identity: 30% PDB header:unknown function Chain: B: PDB Molecule:cbs domain protein/act domain protein; PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution Phyre2 PDB 3ddj chain A domain 2 Region: 20 - 50 Aligned: 31 Modelled: 31 Confidence: 33.7% Identity: 19% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 1zfj chain A domain 4 Region: 20 - 47 Aligned: 28 Modelled: 28 Confidence: 33.5% Identity: 18% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 3jtf chain B Region: 20 - 44 Aligned: 25 Modelled: 25 Confidence: 32.5% Identity: 24% PDB header:transport protein Chain: B: PDB Molecule:magnesium and cobalt efflux protein; PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp Phyre2 PDB 2yzq chain A domain 2 Region: 20 - 50 Aligned: 31 Modelled: 31 Confidence: 31.4% Identity: 13% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 3oco chain B Region: 20 - 44 Aligned: 25 Modelled: 25 Confidence: 31.1% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains; PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu Phyre2 PDB 2rih chain A domain 1 Region: 20 - 44 Aligned: 25 Modelled: 25 Confidence: 30.4% Identity: 24% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 1t23 chain A Region: 20 - 55 Aligned: 36 Modelled: 36 Confidence: 30.3% Identity: 19% Fold: Chromosomal protein MC1 Superfamily: Chromosomal protein MC1 Family: Chromosomal protein MC1 Phyre2 1 d2ifea_ 2 c2crqA_ 3 d1tifa_ 4 d1tiga_ 5 d1i96v_ 6 c3nqrD_ 7 d2ouxa2 8 c3i8nB_ 9 d1k4ia_ 10 c3lhhA_ 11 d2yvxa2 12 d1vr9a3 13 c1vr9B_ 14 d3ddja2 15 d1zfja4 16 c3jtfB_ 17 d2yzqa2 18 c3ocoB_ 19 d2riha1 20 d1t23a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ifea_ 100.0 100 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 2 c2crqA_ 100.0 20 PDB header:translation Chain: A: PDB Molecule:mitochondrial translational initiation factor 3; PDBTitle: solution structure of c-terminal domain of riken cdna2 2810012l14 3 d1tifa_ 99.9 57 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 4 d1tiga_ 99.9 48 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 5 d1i96v_ 99.9 57 Fold:IF3-like Superfamily:Translation initiation factor IF3, C-terminal domain Family:Translation initiation factor IF3, C-terminal domain 6 c3nqrD_ 39.5 24 PDB header:transport protein Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc; PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2 7 d2ouxa2 38.9 21 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 8 c3i8nB_ 37.5 32 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp2912; PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633. 9 d1k4ia_ 36.9 21 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 10 c3lhhA_ 36.6 24 PDB header:membrane protein Chain: A: PDB Molecule:cbs domain protein; PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1. 11 d2yvxa2 36.2 24 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 12 d1vr9a3 34.8 30 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 13 c1vr9B_ 34.8 30 PDB header:unknown function Chain: B: PDB Molecule:cbs domain protein/act domain protein; PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution 14 d3ddja2 33.7 19 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 15 d1zfja4 33.5 18 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 16 c3jtfB_ 32.5 24 PDB header:transport protein Chain: B: PDB Molecule:magnesium and cobalt efflux protein; PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp 17 d2yzqa2 31.4 13 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 18 c3ocoB_ 31.1 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains; PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu 19 d2riha1 30.4 24 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 20 d1t23a_ 30.3 19 Fold:Chromosomal protein MC1 Superfamily:Chromosomal protein MC1 Family:Chromosomal protein MC1 21 c3lv9A_ not modelled 30.0 24 PDB header:membrane protein Chain: A: PDB Molecule:putative transporter; PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630 22 c2p9mD_ not modelled 29.2 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661 23 d1g57a_ not modelled 29.0 29 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 24 d2ooxe2 not modelled 28.8 24 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 25 d1snna_ not modelled 28.7 19 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 26 c2yvxD_ not modelled 28.3 24 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 27 d2ef7a1 not modelled 25.9 17 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 28 d1yava3 not modelled 25.4 21 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 29 d1rgra_ not modelled 25.1 21 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 30 c3hf7A_ not modelled 24.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cbs-domain protein; PDBTitle: the crystal structure of a cbs-domain pair with bound amp from2 klebsiella pneumoniae to 2.75a 31 c3gbyA_ not modelled 23.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ct1051; PDBTitle: crystal structure of a protein with unknown function ct10512 from chlorobium tepidum 32 c2x3yA_ not modelled 23.7 16 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 33 d2nyca1 not modelled 23.1 20 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 34 c3ctuB_ not modelled 22.6 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4 35 d3ddja1 not modelled 22.4 17 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 36 c3ocmA_ not modelled 22.3 28 PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 37 c3ocmB_ not modelled 22.3 28 PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 38 d2v8qe1 not modelled 22.2 24 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 39 c3kpbA_ not modelled 21.8 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine. 40 c3lqnA_ not modelled 21.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain-containing protein of2 unknown function from bacillus anthracis str. ames ancestor 41 d1pvma4 not modelled 21.2 20 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 42 c3lfrB_ not modelled 21.1 20 PDB header:transport protein Chain: B: PDB Molecule:putative metal ion transporter; PDBTitle: the crystal structure of a cbs domain from a putative metal2 ion transporter bound to amp from pseudomonas syringae to3 1.55a 43 d2yzqa1 not modelled 20.8 16 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 44 c3ju2A_ not modelled 20.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 45 d1a9xa3 not modelled 20.6 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 46 c2ehrA_ not modelled 20.5 33 PDB header:structural protein Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the sixth pdz domain of human inad-2 like protein 47 c2qh1B_ not modelled 19.9 20 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ta0289; PDBTitle: structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound2 state 48 c3lmzA_ not modelled 18.1 19 PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution 49 c3shoA_ not modelled 18.0 23 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 50 c2xhzC_ not modelled 17.3 20 PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography 51 d1vima_ not modelled 16.6 20 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 52 c1yavB_ not modelled 16.6 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14130; PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis 53 d2hc5a1 not modelled 16.4 9 Fold:FlaG-like Superfamily:FlaG-like Family:FlaG-like 54 d1tksa_ not modelled 15.8 19 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 55 d1ozia_ not modelled 15.8 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 56 c2i6kA_ not modelled 15.7 10 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 57 c2emqA_ not modelled 15.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: hypothetical conserved protein (gk1048) from geobacillus kaustophilus 58 c3fldA_ not modelled 14.4 17 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: crystal structure of the trai c-terminal domain 59 d1m3sa_ not modelled 14.3 18 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 60 c3k1rA_ not modelled 13.8 10 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 61 d2i0ia1 not modelled 13.7 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 62 c3ljkA_ not modelled 13.4 19 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 63 d1hf2a2 not modelled 13.4 16 Fold:Cell-division inhibitor MinC, N-terminal domain Superfamily:Cell-division inhibitor MinC, N-terminal domain Family:Cell-division inhibitor MinC, N-terminal domain 64 d1o50a3 not modelled 13.3 23 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 65 c1t10A_ not modelled 13.2 24 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate 66 c2o2cB_ not modelled 12.5 29 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site 67 c2ouxB_ not modelled 12.5 25 PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter 68 d1u0fa_ not modelled 12.3 24 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 69 d1m5za_ not modelled 12.2 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 70 d1jr1a4 not modelled 12.0 9 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 71 d1hm5a_ not modelled 10.9 26 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 72 d1g9oa_ not modelled 10.9 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 73 c3m1rF_ not modelled 10.8 36 PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 74 c2zj3A_ not modelled 10.8 20 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase 75 c1zfjA_ not modelled 10.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 76 d1vjea_ not modelled 10.7 20 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 77 c2pnyA_ not modelled 10.5 10 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 78 c3fkjA_ not modelled 10.5 25 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution 79 c2qqdG_ not modelled 10.4 28 PDB header:lyase Chain: G: PDB Molecule:pyruvoyl-dependent arginine decarboxylase (ec PDBTitle: n47a mutant of pyruvoyl-dependent arginine decarboxylase2 from methanococcus jannashii 80 d1vb7a_ not modelled 10.4 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 81 c3nioF_ not modelled 10.3 36 PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase 82 c2l1iA_ not modelled 10.2 21 PDB header:transcription Chain: A: PDB Molecule:hltf protein; PDBTitle: nmr structure of the hltf hiran domain 83 c2puwA_ not modelled 10.1 20 PDB header:transferase Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans 84 c1hf2A_ not modelled 9.9 20 PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima 85 c2yt7A_ not modelled 9.9 30 PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3 86 d1gsoa2 not modelled 9.6 23 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 87 c3euaD_ not modelled 9.5 20 PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution 88 d1q50a_ not modelled 9.0 24 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 89 c3fxaA_ not modelled 8.9 16 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 90 c1zu4A_ not modelled 8.8 21 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 91 d1gzda_ not modelled 8.7 26 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 92 d1x94a_ not modelled 8.7 14 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 93 d1iata_ not modelled 8.6 26 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 94 c2yvzA_ not modelled 8.5 18 PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form 95 c2wu8A_ not modelled 8.3 33 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 96 c2eq9C_ not modelled 8.3 20 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 97 d2g0wa1 not modelled 8.2 27 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 98 c3k2yD_ not modelled 8.0 17 PDB header:nucleotide binding protein Chain: D: PDB Molecule:uncharacterized protein lp_0118; PDBTitle: crystal structure of protein lp_0118 from lactobacillus2 plantarum,northeast structural genomics consortium target3 lpr91b 99 d2fy6a1 not modelled 7.9 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0